RNA–Protein interactions for RNA: ENST00000622226.1

PDLIM2-220, Transcript of PDZ and LIM domain 2, humanhuman

Gene PDLIM2, Length 6,559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-220ENST00000622226 RAB3GAP2Q9H2M9 1393 aa18.39■□□□□ 0.53
PDLIM2-220ENST00000622226 ANKRD62A6NC57 917 aa18.39■□□□□ 0.53
PDLIM2-220ENST00000622226 FAM193AP78312 1265 aa18.39■□□□□ 0.53
PDLIM2-220ENST00000622226 RBM25P49756 843 aaKnown RBP18.39■□□□□ 0.53
PDLIM2-220ENST00000622226 CWC22Q9HCG8 908 aaKnown RBP18.39■□□□□ 0.53
PDLIM2-220ENST00000622226 TSPY26PQ9H489 355 aa18.38■□□□□ 0.53
PDLIM2-220ENST00000622226 NUTM2GQ5VZR2 741 aa18.38■□□□□ 0.53
PDLIM2-220ENST00000622226 MYBBP1AQ9BQG0 1328 aaKnown RBP18.38■□□□□ 0.53
PDLIM2-220ENST00000622226 TRDNQ13061 729 aa18.38■□□□□ 0.53
PDLIM2-220ENST00000622226 TAF3Q5VWG9 929 aa18.37■□□□□ 0.53
PDLIM2-220ENST00000622226 L3MBTL2Q969R5 705 aa18.37■□□□□ 0.53
PDLIM2-220ENST00000622226 E9PSI1 815 aa18.37■□□□□ 0.53
PDLIM2-220ENST00000622226 INTS3Q68E01 1043 aaKnown RBP18.37■□□□□ 0.53
PDLIM2-220ENST00000622226 C9orf78Q9NZ63 289 aaPredicted RBP18.36■□□□□ 0.53
PDLIM2-220ENST00000622226 RNF20Q5VTR2 975 aa18.36■□□□□ 0.53
PDLIM2-220ENST00000622226 TERF2IPQ9NYB0 399 aa18.36■□□□□ 0.53
PDLIM2-220ENST00000622226 CCDC43Q96MW1 224 aaKnown RBP18.36■□□□□ 0.53
PDLIM2-220ENST00000622226 CEP164Q9UPV0 1460 aa18.36■□□□□ 0.53
PDLIM2-220ENST00000622226 HMGN5P82970 282 aaKnown RBP18.36■□□□□ 0.53
PDLIM2-220ENST00000622226 PANK3Q9H999 370 aa18.36■□□□□ 0.53
PDLIM2-220ENST00000622226 APAF1O14727 1248 aa18.35■□□□□ 0.53
PDLIM2-220ENST00000622226 DYDC1Q8WWB3 177 aa18.35■□□□□ 0.53
PDLIM2-220ENST00000622226 SMARCA2P51531 1590 aa18.35■□□□□ 0.53
PDLIM2-220ENST00000622226 ENOX2Q16206 610 aaKnown RBP18.35■□□□□ 0.53
PDLIM2-220ENST00000622226 TRAK1Q9UPV9 953 aa18.35■□□□□ 0.53
PDLIM2-220ENST00000622226 DEF6Q9H4E7 631 aa18.34■□□□□ 0.53
PDLIM2-220ENST00000622226 MTMR7Q9Y216 660 aa18.34■□□□□ 0.53
PDLIM2-220ENST00000622226 TAX1BP1Q86VP1 789 aa18.34■□□□□ 0.53
PDLIM2-220ENST00000622226 ZBED9Q6R2W3 1325 aa18.34■□□□□ 0.53
PDLIM2-220ENST00000622226 CEBPZQ03701 1054 aaKnown RBP18.34■□□□□ 0.53
PDLIM2-220ENST00000622226 DDX19BQ9UMR2 479 aa18.34■□□□□ 0.53
PDLIM2-220ENST00000622226 TRIM34Q9BYJ4 488 aa18.34■□□□□ 0.53
PDLIM2-220ENST00000622226 KIF15Q9NS87 1388 aa18.34■□□□□ 0.53
PDLIM2-220ENST00000622226 TRERF1Q96PN7 1200 aa18.33■□□□□ 0.53
PDLIM2-220ENST00000622226 SAFBQ15424 915 aaKnown RBP eCLIP18.33■□□□□ 0.53
PDLIM2-220ENST00000622226 KANK4Q5T7N3 995 aaPredicted RBP18.33■□□□□ 0.53
PDLIM2-220ENST00000622226 CTDP1Q9Y5B0 961 aaPredicted RBP18.33■□□□□ 0.53
PDLIM2-220ENST00000622226 ATP2B1P20020 1258 aa18.33■□□□□ 0.53
PDLIM2-220ENST00000622226 EFCAB2Q5VUJ9 269 aa18.33■□□□□ 0.52
PDLIM2-220ENST00000622226 CARMIL2Q6F5E8 1435 aa18.32■□□□□ 0.52
PDLIM2-220ENST00000622226 DZIP1LQ8IYY4 767 aaKnown RBP18.32■□□□□ 0.52
PDLIM2-220ENST00000622226 MYO6Q9UM54 1294 aa18.32■□□□□ 0.52
PDLIM2-220ENST00000622226 PHLDB1Q86UU1 1377 aa18.32■□□□□ 0.52
PDLIM2-220ENST00000622226 CARMIL1Q5VZK9 1371 aa18.32■□□□□ 0.52
PDLIM2-220ENST00000622226 ERICH2A1L162 156 aa18.32■□□□□ 0.52
PDLIM2-220ENST00000622226 CCDC112Q8NEF3 446 aa18.32■□□□□ 0.52
PDLIM2-220ENST00000622226 SF3B2Q13435 895 aaKnown RBP18.32■□□□□ 0.52
PDLIM2-220ENST00000622226 FIBPO43427 364 aa18.31■□□□□ 0.52
PDLIM2-220ENST00000622226 AMOTL1Q8IY63 956 aa18.31■□□□□ 0.52
PDLIM2-220ENST00000622226 GOLGA6L10A6NI86 522 aa18.31■□□□□ 0.52
PDLIM2-220ENST00000622226 NUP155O75694 1391 aa18.31■□□□□ 0.52
PDLIM2-220ENST00000622226 LRRFIP1Q32MZ4 808 aaKnown RBP18.3■□□□□ 0.52
PDLIM2-220ENST00000622226 PSME1Q06323 249 aa18.3■□□□□ 0.52
PDLIM2-220ENST00000622226 EIF3AQ14152 1382 aaKnown RBP18.29■□□□□ 0.52
PDLIM2-220ENST00000622226 CBX1P83916 185 aa18.29■□□□□ 0.52
PDLIM2-220ENST00000622226 FYB1O15117 783 aa18.29■□□□□ 0.52
PDLIM2-220ENST00000622226 NOL10Q9BSC4 688 aaKnown RBP18.29■□□□□ 0.52
PDLIM2-220ENST00000622226 GOLGA6L7A0A1B0GV03 622 aa18.29■□□□□ 0.52
PDLIM2-220ENST00000622226 RRP9O43818 475 aaKnown RBP18.29■□□□□ 0.52
PDLIM2-220ENST00000622226 SOGA1O94964 1423 aa18.29■□□□□ 0.52
PDLIM2-220ENST00000622226 KINO60870 393 aaKnown RBP18.28■□□□□ 0.52
PDLIM2-220ENST00000622226 STK11IPQ8N1F8 1099 aa18.28■□□□□ 0.52
PDLIM2-220ENST00000622226 PANK1Q8TE04 598 aa18.28■□□□□ 0.52
PDLIM2-220ENST00000622226 SMARCE1Q969G3 411 aa18.28■□□□□ 0.52
PDLIM2-220ENST00000622226 FAM177BA6PVY3 158 aa18.28■□□□□ 0.52
PDLIM2-220ENST00000622226 SEPT7Q16181 437 aaKnown RBP18.28■□□□□ 0.52
PDLIM2-220ENST00000622226 PRKRIP1Q9H875 184 aaPredicted RBP18.28■□□□□ 0.52
PDLIM2-220ENST00000622226 GPATCH11Q8N954 259 aa18.27■□□□□ 0.52
PDLIM2-220ENST00000622226 GIMAP7Q8NHV1 300 aa18.27■□□□□ 0.52
PDLIM2-220ENST00000622226 ST20-MTHFSA0A0A6YYL1 179 aa18.27■□□□□ 0.52
PDLIM2-220ENST00000622226 CCDC102AQ96A19 550 aa18.27■□□□□ 0.52
PDLIM2-220ENST00000622226 ATF3P18847 181 aa18.27■□□□□ 0.52
PDLIM2-220ENST00000622226 TICAM2Q86XR7 235 aa18.27■□□□□ 0.52
PDLIM2-220ENST00000622226 ZSCAN21Q9Y5A6 473 aaPredicted RBP18.26■□□□□ 0.51
PDLIM2-220ENST00000622226 ARHGAP35Q9NRY4 1499 aa18.26■□□□□ 0.51
PDLIM2-220ENST00000622226 PDS5BQ9NTI5 1447 aa18.26■□□□□ 0.51
PDLIM2-220ENST00000622226 SERPINC1P01008 464 aa18.26■□□□□ 0.51
PDLIM2-220ENST00000622226 NEXNQ0ZGT2 675 aa18.26■□□□□ 0.51
PDLIM2-220ENST00000622226 ZRSR2Q15696 482 aaKnown RBP18.26■□□□□ 0.51
PDLIM2-220ENST00000622226 ZNF428Q96B54 188 aa18.26■□□□□ 0.51
PDLIM2-220ENST00000622226 G3BP1Q13283 466 aaKnown RBP eCLIP18.26■□□□□ 0.51
PDLIM2-220ENST00000622226 GRPEL1Q9HAV7 217 aa18.26■□□□□ 0.51
PDLIM2-220ENST00000622226 FILIP1LQ4L180 1135 aa18.25■□□□□ 0.51
PDLIM2-220ENST00000622226 VPS37DQ86XT2 251 aa18.25■□□□□ 0.51
PDLIM2-220ENST00000622226 LETM1O95202 739 aaPredicted RBP18.25■□□□□ 0.51
PDLIM2-220ENST00000622226 RALYLQ86SE5 291 aaKnown RBP18.25■□□□□ 0.51
PDLIM2-220ENST00000622226 IPO4Q8TEX9 1081 aaKnown RBP18.25■□□□□ 0.51
PDLIM2-220ENST00000622226 CCP110O43303 1012 aa18.25■□□□□ 0.51
PDLIM2-220ENST00000622226 USP8P40818 1118 aa18.24■□□□□ 0.51
PDLIM2-220ENST00000622226 CCDC181Q5TID7 509 aa18.24■□□□□ 0.51
PDLIM2-220ENST00000622226 FKBP5Q13451 457 aaPredicted RBP18.24■□□□□ 0.51
PDLIM2-220ENST00000622226 WASHC4Q2M389 1173 aa18.24■□□□□ 0.51
PDLIM2-220ENST00000622226 CLASRPQ8N2M8 674 aaKnown RBP18.24■□□□□ 0.51
PDLIM2-220ENST00000622226 MBD3O95983 291 aa18.24■□□□□ 0.51
PDLIM2-220ENST00000622226 ERLIN2O94905 339 aa18.23■□□□□ 0.51
PDLIM2-220ENST00000622226 NEK4P51957 841 aa18.23■□□□□ 0.51
PDLIM2-220ENST00000622226 EIF3JO75822 258 aaKnown RBP18.23■□□□□ 0.51
PDLIM2-220ENST00000622226 MAGEC2Q9UBF1 373 aaPredicted RBP18.23■□□□□ 0.51
PDLIM2-220ENST00000622226 CDC45O75419 566 aa18.22■□□□□ 0.51
PDLIM2-220ENST00000622226 C1orf141Q5JVX7 400 aa18.22■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms