RNA–Protein interactions for RNA: ENST00000621266.4

COL4A6-210, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,627 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-210ENST00000621266 CAVIN1Q6NZI2 390 aaKnown RBP11.96□□□□□ -0.5
COL4A6-210ENST00000621266 DHX57Q6P158 1386 aaKnown RBP11.96□□□□□ -0.5
COL4A6-210ENST00000621266 ARHGAP5Q13017 1502 aa11.95□□□□□ -0.5
COL4A6-210ENST00000621266 SPC24Q8NBT2 197 aa11.95□□□□□ -0.5
COL4A6-210ENST00000621266 ST20-MTHFSA0A0A6YYL1 179 aa11.95□□□□□ -0.5
COL4A6-210ENST00000621266 KIAA0754O94854 1291 aa11.95□□□□□ -0.5
COL4A6-210ENST00000621266 MPNDQ8N594 471 aa11.95□□□□□ -0.5
COL4A6-210ENST00000621266 DEF6Q9H4E7 631 aa11.95□□□□□ -0.5
COL4A6-210ENST00000621266 PHLDB1Q86UU1 1377 aa11.95□□□□□ -0.5
COL4A6-210ENST00000621266 CCDC173Q0VFZ6 552 aa11.95□□□□□ -0.5
COL4A6-210ENST00000621266 NUCB2P80303 420 aa11.94□□□□□ -0.5
COL4A6-210ENST00000621266 MYOM3Q5VTT5 1437 aa11.94□□□□□ -0.5
COL4A6-210ENST00000621266 PRG4Q92954 1404 aaPredicted RBP11.94□□□□□ -0.5
COL4A6-210ENST00000621266 LMOD3Q0VAK6 560 aa11.94□□□□□ -0.5
COL4A6-210ENST00000621266 RBM25P49756 843 aaKnown RBP11.94□□□□□ -0.5
COL4A6-210ENST00000621266 TRIM29Q14134 588 aa11.94□□□□□ -0.5
COL4A6-210ENST00000621266 TRIM5Q9C035 493 aa11.94□□□□□ -0.5
COL4A6-210ENST00000621266 CENPHQ9H3R5 247 aa11.94□□□□□ -0.5
COL4A6-210ENST00000621266 CT47B1P0C2W7 299 aaPredicted RBP11.93□□□□□ -0.5
COL4A6-210ENST00000621266 STRN4Q9NRL3 753 aa11.93□□□□□ -0.5
COL4A6-210ENST00000621266 HOOK1Q9UJC3 728 aaKnown RBP11.93□□□□□ -0.5
COL4A6-210ENST00000621266 TAF3Q5VWG9 929 aa11.93□□□□□ -0.5
COL4A6-210ENST00000621266 PROSER2Q86WR7 435 aaPredicted RBP11.93□□□□□ -0.5
COL4A6-210ENST00000621266 KIF15Q9NS87 1388 aa11.93□□□□□ -0.5
COL4A6-210ENST00000621266 SMC3Q9UQE7 1217 aa11.93□□□□□ -0.5
COL4A6-210ENST00000621266 HMGN5P82970 282 aaKnown RBP11.93□□□□□ -0.5
COL4A6-210ENST00000621266 STK11IPQ8N1F8 1099 aa11.93□□□□□ -0.5
COL4A6-210ENST00000621266 IBSPP21815 317 aaPredicted RBP11.92□□□□□ -0.5
COL4A6-210ENST00000621266 ESCO1Q5FWF5 840 aa11.92□□□□□ -0.5
COL4A6-210ENST00000621266 HSP90AB2PQ58FF8 381 aa11.92□□□□□ -0.5
COL4A6-210ENST00000621266 DYDC1Q8WWB3 177 aa11.92□□□□□ -0.5
COL4A6-210ENST00000621266 COG3Q96JB2 828 aa11.92□□□□□ -0.5
COL4A6-210ENST00000621266 TSPY26PQ9H489 355 aa11.92□□□□□ -0.5
COL4A6-210ENST00000621266 C22orf23Q9BZE7 217 aa11.92□□□□□ -0.5
COL4A6-210ENST00000621266 ELL2O00472 640 aaPredicted RBP11.91□□□□□ -0.5
COL4A6-210ENST00000621266 REC8O95072 547 aa11.91□□□□□ -0.5
COL4A6-210ENST00000621266 CCDC47Q96A33 483 aaKnown RBP11.91□□□□□ -0.5
COL4A6-210ENST00000621266 CGNL1Q0VF96 1302 aa11.91□□□□□ -0.5
COL4A6-210ENST00000621266 SMC2O95347 1197 aa11.91□□□□□ -0.5
COL4A6-210ENST00000621266 CCDC73Q6ZRK6 1079 aa11.91□□□□□ -0.5
COL4A6-210ENST00000621266 GPATCH11Q8N954 259 aa11.91□□□□□ -0.5
COL4A6-210ENST00000621266 HDAC5Q9UQL6 1122 aa11.91□□□□□ -0.5
COL4A6-210ENST00000621266 SYNE3Q6ZMZ3 975 aa11.91□□□□□ -0.5
COL4A6-210ENST00000621266 EVC2Q86UK5 1308 aa11.91□□□□□ -0.5
COL4A6-210ENST00000621266 GIMAP7Q8NHV1 300 aa11.91□□□□□ -0.5
COL4A6-210ENST00000621266 PANK3Q9H999 370 aa11.9□□□□□ -0.5
COL4A6-210ENST00000621266 CBX1P83916 185 aa11.9□□□□□ -0.5
COL4A6-210ENST00000621266 NECTIN2Q92692 538 aa11.9□□□□□ -0.5
COL4A6-210ENST00000621266 MYBBP1AQ9BQG0 1328 aaKnown RBP11.9□□□□□ -0.5
COL4A6-210ENST00000621266 CT47A1Q5JQC4 288 aaPredicted RBP11.9□□□□□ -0.5
COL4A6-210ENST00000621266 RAD21O60216 631 aa11.9□□□□□ -0.51
COL4A6-210ENST00000621266 CCDC27Q2M243 656 aa11.9□□□□□ -0.51
COL4A6-210ENST00000621266 ZKSCAN2Q63HK3 967 aa11.89□□□□□ -0.51
COL4A6-210ENST00000621266 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.89□□□□□ -0.51
COL4A6-210ENST00000621266 TRERF1Q96PN7 1200 aa11.89□□□□□ -0.51
COL4A6-210ENST00000621266 CPLX1O14810 134 aa11.89□□□□□ -0.51
COL4A6-210ENST00000621266 ZKSCAN1P17029 563 aaPredicted RBP11.89□□□□□ -0.51
COL4A6-210ENST00000621266 OLFM4Q6UX06 510 aa11.89□□□□□ -0.51
COL4A6-210ENST00000621266 TXNDC2Q86VQ3 553 aa11.89□□□□□ -0.51
COL4A6-210ENST00000621266 NAT10Q9H0A0 1025 aaKnown RBP11.89□□□□□ -0.51
COL4A6-210ENST00000621266 CUX1P39880 1505 aa11.89□□□□□ -0.51
COL4A6-210ENST00000621266 FAM193AP78312 1265 aa11.89□□□□□ -0.51
COL4A6-210ENST00000621266 CHMP4CQ96CF2 233 aa11.89□□□□□ -0.51
COL4A6-210ENST00000621266 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.89□□□□□ -0.51
COL4A6-210ENST00000621266 FGD6Q6ZV73 1430 aa11.88□□□□□ -0.51
COL4A6-210ENST00000621266 SNAPC4Q5SXM2 1469 aa11.88□□□□□ -0.51
COL4A6-210ENST00000621266 PRPF40AO75400 957 aaKnown RBP11.88□□□□□ -0.51
COL4A6-210ENST00000621266 TTC5Q8N0Z6 440 aa11.88□□□□□ -0.51
COL4A6-210ENST00000621266 USP8P40818 1118 aa11.88□□□□□ -0.51
COL4A6-210ENST00000621266 GRIN2BQ13224 1484 aa11.88□□□□□ -0.51
COL4A6-210ENST00000621266 USP47Q96K76 1375 aa11.88□□□□□ -0.51
COL4A6-210ENST00000621266 CCDC112Q8NEF3 446 aa11.87□□□□□ -0.51
COL4A6-210ENST00000621266 ZBED9Q6R2W3 1325 aa11.87□□□□□ -0.51
COL4A6-210ENST00000621266 ODF2Q5BJF6 829 aa11.87□□□□□ -0.51
COL4A6-210ENST00000621266 ZFYVE27Q5T4F4 411 aa11.87□□□□□ -0.51
COL4A6-210ENST00000621266 ZHX1Q9UKY1 873 aaPredicted RBP11.87□□□□□ -0.51
COL4A6-210ENST00000621266 EIF2S2P20042 333 aaKnown RBP11.87□□□□□ -0.51
COL4A6-210ENST00000621266 ZRSR2Q15696 482 aaKnown RBP11.87□□□□□ -0.51
COL4A6-210ENST00000621266 CPLX2Q6PUV4 134 aaKnown RBP11.86□□□□□ -0.51
COL4A6-210ENST00000621266 TICAM2Q86XR7 235 aa11.86□□□□□ -0.51
COL4A6-210ENST00000621266 RUFY2Q8WXA3 655 aa11.86□□□□□ -0.51
COL4A6-210ENST00000621266 FMNL2Q96PY5 1086 aa11.86□□□□□ -0.51
COL4A6-210ENST00000621266 CGNQ9P2M7 1197 aaKnown RBP11.86□□□□□ -0.51
COL4A6-210ENST00000621266 GRPEL1Q9HAV7 217 aa11.86□□□□□ -0.51
COL4A6-210ENST00000621266 GOLGA6L7A0A1B0GV03 622 aa11.86□□□□□ -0.51
COL4A6-210ENST00000621266 FAM177A1Q8N128 213 aaPredicted RBP11.86□□□□□ -0.51
COL4A6-210ENST00000621266 ZNF644Q9H582 1327 aaPredicted RBP11.85□□□□□ -0.51
COL4A6-210ENST00000621266 KDM4AO75164 1064 aa11.85□□□□□ -0.51
COL4A6-210ENST00000621266 RAPGEF3O95398 923 aa11.85□□□□□ -0.51
COL4A6-210ENST00000621266 NEFHP12036 1026 aa11.85□□□□□ -0.51
COL4A6-210ENST00000621266 MYO6Q9UM54 1294 aa11.85□□□□□ -0.51
COL4A6-210ENST00000621266 LETM1O95202 739 aaPredicted RBP11.85□□□□□ -0.51
COL4A6-210ENST00000621266 BRPF1P55201 1214 aaPredicted RBP11.85□□□□□ -0.51
COL4A6-210ENST00000621266 INTS3Q68E01 1043 aaKnown RBP11.85□□□□□ -0.51
COL4A6-210ENST00000621266 IPO4Q8TEX9 1081 aaKnown RBP11.85□□□□□ -0.51
COL4A6-210ENST00000621266 STAC3Q96MF2 364 aa11.85□□□□□ -0.51
COL4A6-210ENST00000621266 SDF4Q9BRK5 362 aa11.85□□□□□ -0.51
COL4A6-210ENST00000621266 CWC22Q9HCG8 908 aaKnown RBP11.85□□□□□ -0.51
COL4A6-210ENST00000621266 CFTRP13569 1480 aa11.85□□□□□ -0.51
COL4A6-210ENST00000621266 GOLGA6L10A6NI86 522 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms