RNA–Protein interactions for RNA: ENST00000620393.4

CPNE3-209, Transcript of copine 3, humanhuman

TSL 5

Gene CPNE3, Length 680 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-209ENST00000620393 C11orf95C9JLR9 678 aaPredicted RBP11.22□□□□□ -0.61
CPNE3-209ENST00000620393 EIF3AQ14152 1382 aaKnown RBP11.22□□□□□ -0.61
CPNE3-209ENST00000620393 PIK3R4Q99570 1358 aa11.22□□□□□ -0.61
CPNE3-209ENST00000620393 KIAA1210Q9ULL0 1709 aa11.22□□□□□ -0.61
CPNE3-209ENST00000620393 CENPJQ9HC77 1338 aaPredicted RBP11.21□□□□□ -0.61
CPNE3-209ENST00000620393 PRAM1Q96QH2 718 aa11.21□□□□□ -0.61
CPNE3-209ENST00000620393 POGKQ9P215 609 aa11.21□□□□□ -0.61
CPNE3-209ENST00000620393 KCNA6P17658 529 aa11.2□□□□□ -0.62
CPNE3-209ENST00000620393 TMF1P82094 1093 aa11.2□□□□□ -0.62
CPNE3-209ENST00000620393 WAPLQ7Z5K2 1190 aa11.2□□□□□ -0.62
CPNE3-209ENST00000620393 LAMC1P11047 1609 aa11.19□□□□□ -0.62
CPNE3-209ENST00000620393 PTPRUQ92729 1446 aa11.18□□□□□ -0.62
CPNE3-209ENST00000620393 NRXN3Q9Y4C0 1643 aa11.18□□□□□ -0.62
CPNE3-209ENST00000620393 ASXL1Q8IXJ9 1541 aa11.18□□□□□ -0.62
CPNE3-209ENST00000620393 TECPR2O15040 1411 aa11.18□□□□□ -0.62
CPNE3-209ENST00000620393 WASHC2AQ641Q2 1341 aa11.17□□□□□ -0.62
CPNE3-209ENST00000620393 SAFB2Q14151 953 aaKnown RBP eCLIP11.17□□□□□ -0.62
CPNE3-209ENST00000620393 CDCA8Q53HL2 280 aa11.17□□□□□ -0.62
CPNE3-209ENST00000620393 FAM135BQ49AJ0 1406 aa11.17□□□□□ -0.62
CPNE3-209ENST00000620393 ROBO2Q9HCK4 1378 aa11.16□□□□□ -0.62
CPNE3-209ENST00000620393 SBNO2Q9Y2G9 1366 aa11.16□□□□□ -0.62
CPNE3-209ENST00000620393 KIF7Q2M1P5 1343 aa11.16□□□□□ -0.62
CPNE3-209ENST00000620393 PUS7Q96PZ0 661 aaKnown RBP11.16□□□□□ -0.62
CPNE3-209ENST00000620393 DIP2AQ14689 1571 aa11.16□□□□□ -0.62
CPNE3-209ENST00000620393 CCDC7Q96M83 1385 aa11.16□□□□□ -0.62
CPNE3-209ENST00000620393 PLEKHH1Q9ULM0 1364 aa11.15□□□□□ -0.63
CPNE3-209ENST00000620393 DLC1Q96QB1 1528 aa11.14□□□□□ -0.63
CPNE3-209ENST00000620393 EVC2Q86UK5 1308 aa11.14□□□□□ -0.63
CPNE3-209ENST00000620393 MINK1Q8N4C8 1332 aaPredicted RBP11.14□□□□□ -0.63
CPNE3-209ENST00000620393 DDX10Q13206 875 aaKnown RBP11.14□□□□□ -0.63
CPNE3-209ENST00000620393 POLR3GLQ9BT43 218 aa11.14□□□□□ -0.63
CPNE3-209ENST00000620393 IQGAP1P46940 1657 aa11.14□□□□□ -0.63
CPNE3-209ENST00000620393 PROSER2Q86WR7 435 aaPredicted RBP11.13□□□□□ -0.63
CPNE3-209ENST00000620393 CDK19Q9BWU1 502 aa11.13□□□□□ -0.63
CPNE3-209ENST00000620393 DISP3Q9P2K9 1392 aa11.13□□□□□ -0.63
CPNE3-209ENST00000620393 SETD1AO15047 1707 aaKnown RBP11.12□□□□□ -0.63
CPNE3-209ENST00000620393 WASLO00401 505 aaPredicted RBP11.12□□□□□ -0.63
CPNE3-209ENST00000620393 PTCH1Q13635 1447 aa11.11□□□□□ -0.63
CPNE3-209ENST00000620393 AKT1S1Q96B36 256 aa11.11□□□□□ -0.63
CPNE3-209ENST00000620393 SRPK2P78362 688 aaKnown RBP11.1□□□□□ -0.63
CPNE3-209ENST00000620393 CABP2Q9NPB3 220 aa11.1□□□□□ -0.63
CPNE3-209ENST00000620393 DIEXFQ68CQ4 756 aaKnown RBP11.09□□□□□ -0.63
CPNE3-209ENST00000620393 RBM33Q96EV2 1170 aaKnown RBP11.09□□□□□ -0.63
CPNE3-209ENST00000620393 CPS1P31327 1500 aa11.08□□□□□ -0.64
CPNE3-209ENST00000620393 STRCQ7RTU9 1775 aa11.08□□□□□ -0.64
CPNE3-209ENST00000620393 ZNF335Q9H4Z2 1342 aaPredicted RBP11.08□□□□□ -0.64
CPNE3-209ENST00000620393 POLR1AO95602 1720 aaPredicted RBP11.07□□□□□ -0.64
CPNE3-209ENST00000620393 NUDT16Q96DE0 195 aaKnown RBP11.07□□□□□ -0.64
CPNE3-209ENST00000620393 SLC12A5Q9H2X9 1139 aa11.07□□□□□ -0.64
CPNE3-209ENST00000620393 C19orf44Q9H6X5 657 aa11.07□□□□□ -0.64
CPNE3-209ENST00000620393 PANK3Q9H999 370 aa11.07□□□□□ -0.64
CPNE3-209ENST00000620393 C14orf37Q86TY3 774 aa11.06□□□□□ -0.64
CPNE3-209ENST00000620393 TMC1Q8TDI8 760 aa11.06□□□□□ -0.64
CPNE3-209ENST00000620393 CCDC61Q9Y6R9 512 aa11.06□□□□□ -0.64
CPNE3-209ENST00000620393 NCOA3Q9Y6Q9 1424 aa11.06□□□□□ -0.64
CPNE3-209ENST00000620393 TMEM94Q12767 1356 aa11.05□□□□□ -0.64
CPNE3-209ENST00000620393 ATAD2Q6PL18 1390 aa11.05□□□□□ -0.64
CPNE3-209ENST00000620393 XRN1Q8IZH2 1706 aaKnown RBP11.05□□□□□ -0.64
CPNE3-209ENST00000620393 ARHGEF28Q8N1W1 1705 aaKnown RBP11.05□□□□□ -0.64
CPNE3-209ENST00000620393 CABP1Q9NZU7 370 aa11.05□□□□□ -0.64
CPNE3-209ENST00000620393 CHD2O14647 1828 aaKnown RBP11.05□□□□□ -0.64
CPNE3-209ENST00000620393 KNDC1Q76NI1 1749 aa11.04□□□□□ -0.64
CPNE3-209ENST00000620393 PER1O15534 1290 aaPredicted RBP11.04□□□□□ -0.64
CPNE3-209ENST00000620393 NKTRP30414 1462 aaKnown RBP11.04□□□□□ -0.64
CPNE3-209ENST00000620393 TULP4Q9NRJ4 1543 aa11.04□□□□□ -0.64
CPNE3-209ENST00000620393 NWD1Q149M9 1564 aa11.03□□□□□ -0.64
CPNE3-209ENST00000620393 PLEKHG3A1L390 1219 aa11.03□□□□□ -0.64
CPNE3-209ENST00000620393 NUTM2FA1L443 756 aa11.03□□□□□ -0.64
CPNE3-209ENST00000620393 PRR36Q9H6K5 1346 aa11.03□□□□□ -0.64
CPNE3-209ENST00000620393 ADGRL3Q9HAR2 1447 aa11.02□□□□□ -0.64
CPNE3-209ENST00000620393 ATF3P18847 181 aa11.02□□□□□ -0.65
CPNE3-209ENST00000620393 CARD14Q9BXL6 1004 aa11.02□□□□□ -0.65
CPNE3-209ENST00000620393 TERF2IPQ9NYB0 399 aa11.02□□□□□ -0.65
CPNE3-209ENST00000620393 NINLQ9Y2I6 1382 aa11.02□□□□□ -0.65
CPNE3-209ENST00000620393 QRICH2Q9H0J4 1663 aa11.01□□□□□ -0.65
CPNE3-209ENST00000620393 CADPS2Q86UW7 1296 aa11.01□□□□□ -0.65
CPNE3-209ENST00000620393 ZNF692Q9BU19 519 aaPredicted RBP11.01□□□□□ -0.65
CPNE3-209ENST00000620393 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.01□□□□□ -0.65
CPNE3-209ENST00000620393 SPDYE2BA6NHP3 402 aa11□□□□□ -0.65
CPNE3-209ENST00000620393 SPDYE6P0CI01 402 aa11□□□□□ -0.65
CPNE3-209ENST00000620393 MKRN4PQ13434 485 aaPredicted RBP11□□□□□ -0.65
CPNE3-209ENST00000620393 SPDYE2Q495Y8 402 aa11□□□□□ -0.65
CPNE3-209ENST00000620393 CHRDL2Q6WN34 429 aa11□□□□□ -0.65
CPNE3-209ENST00000620393 HDGFL2Q7Z4V5 671 aaPredicted RBP11□□□□□ -0.65
CPNE3-209ENST00000620393 REM2Q8IYK8 340 aaPredicted RBP11□□□□□ -0.65
CPNE3-209ENST00000620393 KNSTRNQ9Y448 316 aa11□□□□□ -0.65
CPNE3-209ENST00000620393 LRRC7Q96NW7 1537 aa10.99□□□□□ -0.65
CPNE3-209ENST00000620393 MSH6P52701 1360 aa10.99□□□□□ -0.65
CPNE3-209ENST00000620393 ANKRD36BQ8N2N9 1353 aa10.99□□□□□ -0.65
CPNE3-209ENST00000620393 ANKARQ7Z5J8 1434 aa10.99□□□□□ -0.65
CPNE3-209ENST00000620393 ANP32CO43423 234 aa10.98□□□□□ -0.65
CPNE3-209ENST00000620393 ESCO1Q5FWF5 840 aa10.98□□□□□ -0.65
CPNE3-209ENST00000620393 PHF8Q9UPP1 1060 aa10.98□□□□□ -0.65
CPNE3-209ENST00000620393 ACEP12821 1306 aa10.98□□□□□ -0.65
CPNE3-209ENST00000620393 PPIP5K1Q6PFW1 1433 aa10.98□□□□□ -0.65
CPNE3-209ENST00000620393 ADGRB2O60241 1585 aa10.98□□□□□ -0.65
CPNE3-209ENST00000620393 AMER1Q5JTC6 1135 aaPredicted RBP10.97□□□□□ -0.65
CPNE3-209ENST00000620393 NGDNQ8NEJ9 315 aaKnown RBP10.97□□□□□ -0.65
CPNE3-209ENST00000620393 PMFBP1Q8TBY8 1022 aa10.97□□□□□ -0.65
CPNE3-209ENST00000620393 ATP7BP35670 1465 aa10.96□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 125.7 ms