RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 SIRT1Q96EB6 747 aa28.04■■■□□ 2.08
UPF3A-211ENST00000618700 TRAK1Q9UPV9 953 aa28.04■■■□□ 2.08
UPF3A-211ENST00000618700 TMEM94Q12767 1356 aa28.03■■■□□ 2.08
UPF3A-211ENST00000618700 CARD11Q9BXL7 1154 aa28.03■■■□□ 2.08
UPF3A-211ENST00000618700 NCOA3Q9Y6Q9 1424 aa28.02■■■□□ 2.08
UPF3A-211ENST00000618700 PROSER2Q86WR7 435 aaPredicted RBP28.02■■■□□ 2.08
UPF3A-211ENST00000618700 PLEKHH1Q9ULM0 1364 aa28■■■□□ 2.07
UPF3A-211ENST00000618700 WAPLQ7Z5K2 1190 aa27.97■■■□□ 2.07
UPF3A-211ENST00000618700 PRAM1Q96QH2 718 aa27.97■■■□□ 2.07
UPF3A-211ENST00000618700 NALCNQ8IZF0 1738 aa27.97■■■□□ 2.07
UPF3A-211ENST00000618700 ADGRL3Q9HAR2 1447 aa27.96■■■□□ 2.07
UPF3A-211ENST00000618700 ZEB1P37275 1124 aaPredicted RBP27.96■■■□□ 2.07
UPF3A-211ENST00000618700 RBM33Q96EV2 1170 aaKnown RBP27.96■■■□□ 2.07
UPF3A-211ENST00000618700 EIF3AQ14152 1382 aaKnown RBP27.96■■■□□ 2.07
UPF3A-211ENST00000618700 SIPA1L2Q9P2F8 1722 aaPredicted RBP27.95■■■□□ 2.07
UPF3A-211ENST00000618700 USP47Q96K76 1375 aa27.93■■■□□ 2.06
UPF3A-211ENST00000618700 ADGRB2O60241 1585 aa27.92■■■□□ 2.06
UPF3A-211ENST00000618700 POGKQ9P215 609 aa27.92■■■□□ 2.06
UPF3A-211ENST00000618700 QRICH2Q9H0J4 1663 aa27.91■■■□□ 2.06
UPF3A-211ENST00000618700 CENPJQ9HC77 1338 aaPredicted RBP27.91■■■□□ 2.06
UPF3A-211ENST00000618700 DCCP43146 1447 aa27.9■■■□□ 2.06
UPF3A-211ENST00000618700 CDC42BPGQ6DT37 1551 aa27.9■■■□□ 2.06
UPF3A-211ENST00000618700 MSH6P52701 1360 aa27.88■■■□□ 2.05
UPF3A-211ENST00000618700 SAFB2Q14151 953 aaKnown RBP eCLIP27.88■■■□□ 2.05
UPF3A-211ENST00000618700 SBNO2Q9Y2G9 1366 aa27.86■■■□□ 2.05
UPF3A-211ENST00000618700 C19orf44Q9H6X5 657 aa27.86■■■□□ 2.05
UPF3A-211ENST00000618700 C14orf37Q86TY3 774 aa27.85■■■□□ 2.05
UPF3A-211ENST00000618700 UBAP1LF5GYI3 381 aa27.83■■■□□ 2.05
UPF3A-211ENST00000618700 MINK1Q8N4C8 1332 aaPredicted RBP27.82■■■□□ 2.04
UPF3A-211ENST00000618700 ST20-MTHFSA0A0A6YYL1 179 aa27.81■■■□□ 2.04
UPF3A-211ENST00000618700 FMN2Q9NZ56 1722 aa27.79■■■□□ 2.04
UPF3A-211ENST00000618700 TULP4Q9NRJ4 1543 aa27.79■■■□□ 2.04
UPF3A-211ENST00000618700 EIF4G2P78344 907 aaKnown RBP eCLIP27.78■■■□□ 2.04
UPF3A-211ENST00000618700 TESK2Q96S53 571 aa27.78■■■□□ 2.04
UPF3A-211ENST00000618700 HIRIP3Q9BW71 556 aaPredicted RBP27.78■■■□□ 2.04
UPF3A-211ENST00000618700 CADPS2Q86UW7 1296 aa27.77■■■□□ 2.04
UPF3A-211ENST00000618700 HSPA5P11021 654 aaKnown RBP27.76■■■□□ 2.03
UPF3A-211ENST00000618700 MST1RQ04912 1400 aa27.75■■■□□ 2.03
UPF3A-211ENST00000618700 ATF3P18847 181 aa27.75■■■□□ 2.03
UPF3A-211ENST00000618700 WASLO00401 505 aaPredicted RBP27.73■■■□□ 2.03
UPF3A-211ENST00000618700 TOM1O60784 492 aa27.73■■■□□ 2.03
UPF3A-211ENST00000618700 ANKARQ7Z5J8 1434 aa27.71■■■□□ 2.03
UPF3A-211ENST00000618700 USP32Q8NFA0 1604 aa27.7■■■□□ 2.03
UPF3A-211ENST00000618700 C1orf167Q5SNV9 1468 aa27.7■■■□□ 2.03
UPF3A-211ENST00000618700 EVC2Q86UK5 1308 aa27.69■■■□□ 2.02
UPF3A-211ENST00000618700 ATP7BP35670 1465 aa27.69■■■□□ 2.02
UPF3A-211ENST00000618700 CDK19Q9BWU1 502 aa27.68■■■□□ 2.02
UPF3A-211ENST00000618700 SLC24A1O60721 1099 aa27.67■■■□□ 2.02
UPF3A-211ENST00000618700 DISP3Q9P2K9 1392 aa27.66■■■□□ 2.02
UPF3A-211ENST00000618700 SLAIN2Q9P270 581 aa27.66■■■□□ 2.02
UPF3A-211ENST00000618700 TOPAZ1Q8N9V7 1692 aa27.65■■■□□ 2.02
UPF3A-211ENST00000618700 PRR36Q9H6K5 1346 aa27.65■■■□□ 2.02
UPF3A-211ENST00000618700 PIP4K2BP78356 416 aa27.64■■■□□ 2.02
UPF3A-211ENST00000618700 NUTM2FA1L443 756 aa27.62■■■□□ 2.01
UPF3A-211ENST00000618700 TMF1P82094 1093 aa27.62■■■□□ 2.01
UPF3A-211ENST00000618700 RGPD8O14715 1765 aaPredicted RBP27.61■■■□□ 2.01
UPF3A-211ENST00000618700 SRPK2P78362 688 aaKnown RBP27.61■■■□□ 2.01
UPF3A-211ENST00000618700 CABP2Q9NPB3 220 aa27.61■■■□□ 2.01
UPF3A-211ENST00000618700 ITSN1Q15811 1721 aa27.61■■■□□ 2.01
UPF3A-211ENST00000618700 ROBO1Q9Y6N7 1651 aa27.6■■■□□ 2.01
UPF3A-211ENST00000618700 PUS7Q96PZ0 661 aaKnown RBP27.6■■■□□ 2.01
UPF3A-211ENST00000618700 NUDT16Q96DE0 195 aaKnown RBP27.59■■■□□ 2.01
UPF3A-211ENST00000618700 BRINP3Q76B58 766 aa27.58■■■□□ 2.01
UPF3A-211ENST00000618700 KIF1AQ12756 1690 aa27.58■■■□□ 2.01
UPF3A-211ENST00000618700 ATAD2Q6PL18 1390 aa27.58■■■□□ 2.01
UPF3A-211ENST00000618700 ORAI2Q96SN7 254 aa27.56■■■□□ 2
UPF3A-211ENST00000618700 SLC4A2P04920 1241 aa27.55■■■□□ 2
UPF3A-211ENST00000618700 CCDC61Q9Y6R9 512 aa27.54■■■□□ 2
UPF3A-211ENST00000618700 CDCA8Q53HL2 280 aa27.53■■■□□ 2
UPF3A-211ENST00000618700 ESCO1Q5FWF5 840 aa27.53■■■□□ 2
UPF3A-211ENST00000618700 PPIP5K1Q6PFW1 1433 aa27.52■■■□□ 2
UPF3A-211ENST00000618700 C11orf95C9JLR9 678 aaPredicted RBP27.52■■■□□ 2
UPF3A-211ENST00000618700 NHSL1Q5SYE7 1610 aa27.52■■■□□ 2
UPF3A-211ENST00000618700 HSPA1LP34931 641 aa27.51■■□□□ 1.99
UPF3A-211ENST00000618700 AHDC1Q5TGY3 1603 aaPredicted RBP27.51■■□□□ 1.99
UPF3A-211ENST00000618700 PHF8Q9UPP1 1060 aa27.5■■□□□ 1.99
UPF3A-211ENST00000618700 MYOM1P52179 1685 aa27.49■■□□□ 1.99
UPF3A-211ENST00000618700 NINLQ9Y2I6 1382 aa27.48■■□□□ 1.99
UPF3A-211ENST00000618700 PLEKHG3A1L390 1219 aa27.48■■□□□ 1.99
UPF3A-211ENST00000618700 POLR3AO14802 1390 aaPredicted RBP27.48■■□□□ 1.99
UPF3A-211ENST00000618700 RNF39Q9H2S5 420 aa27.47■■□□□ 1.99
UPF3A-211ENST00000618700 KIF7Q2M1P5 1343 aa27.46■■□□□ 1.99
UPF3A-211ENST00000618700 PMFBP1Q8TBY8 1022 aa27.45■■□□□ 1.98
UPF3A-211ENST00000618700 CABP1Q9NZU7 370 aa27.45■■□□□ 1.98
UPF3A-211ENST00000618700 PXDNQ92626 1479 aa27.44■■□□□ 1.98
UPF3A-211ENST00000618700 CD163L1Q9NR16 1453 aa27.44■■□□□ 1.98
UPF3A-211ENST00000618700 CCDC7Q96M83 1385 aa27.43■■□□□ 1.98
UPF3A-211ENST00000618700 NPHP3Q7Z494 1330 aa27.42■■□□□ 1.98
UPF3A-211ENST00000618700 ACEP12821 1306 aa27.41■■□□□ 1.98
UPF3A-211ENST00000618700 WASHC2AQ641Q2 1341 aa27.41■■□□□ 1.98
UPF3A-211ENST00000618700 CPSF1Q10570 1443 aaKnown RBP27.41■■□□□ 1.98
UPF3A-211ENST00000618700 AKAP12Q02952 1782 aa27.41■■□□□ 1.98
UPF3A-211ENST00000618700 FOXO3O43524 673 aa27.41■■□□□ 1.98
UPF3A-211ENST00000618700 DDX17Q92841 729 aaKnown RBP27.41■■□□□ 1.98
UPF3A-211ENST00000618700 SLC12A5Q9H2X9 1139 aa27.41■■□□□ 1.98
UPF3A-211ENST00000618700 PHLPP1O60346 1717 aa27.41■■□□□ 1.98
UPF3A-211ENST00000618700 COL16A1Q07092 1604 aaPredicted RBP27.4■■□□□ 1.98
UPF3A-211ENST00000618700 NGDNQ8NEJ9 315 aaKnown RBP27.39■■□□□ 1.98
UPF3A-211ENST00000618700 TMC1Q8TDI8 760 aa27.39■■□□□ 1.98
UPF3A-211ENST00000618700 MON2Q7Z3U7 1717 aa27.38■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms