RNA–Protein interactions for RNA: ENST00000612856.4

FAM3A-221, Transcript of family with sequence similarity 3 member A, humanhuman

TSL 2

Gene FAM3A, Length 3,995 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FAM3A-221ENST00000612856 A0A0U1RQG5 324 aaPredicted RBP13.78□□□□□ -0.2
FAM3A-221ENST00000612856 PNISRQ8TF01 805 aaKnown RBP13.78□□□□□ -0.2
FAM3A-221ENST00000612856 SLKQ9H2G2 1235 aaPredicted RBP13.78□□□□□ -0.2
FAM3A-221ENST00000612856 PNNQ9H307 717 aaKnown RBP13.78□□□□□ -0.2
FAM3A-221ENST00000612856 ZBED9Q6R2W3 1325 aa13.78□□□□□ -0.2
FAM3A-221ENST00000612856 WDR7Q9Y4E6 1490 aa13.77□□□□□ -0.2
FAM3A-221ENST00000612856 ADGBQ8N7X0 1667 aa13.77□□□□□ -0.21
FAM3A-221ENST00000612856 DDX54Q8TDD1 881 aaKnown RBP13.77□□□□□ -0.21
FAM3A-221ENST00000612856 TEFQ10587 303 aa13.76□□□□□ -0.21
FAM3A-221ENST00000612856 SPRYD3Q8NCJ5 442 aa13.76□□□□□ -0.21
FAM3A-221ENST00000612856 SPATA31E1Q6ZUB1 1445 aa13.76□□□□□ -0.21
FAM3A-221ENST00000612856 KAT6BQ8WYB5 2073 aa13.76□□□□□ -0.21
FAM3A-221ENST00000612856 SMC4Q9NTJ3 1288 aa13.76□□□□□ -0.21
FAM3A-221ENST00000612856 CDC42BPBQ9Y5S2 1711 aa13.76□□□□□ -0.21
FAM3A-221ENST00000612856 ZMYND15Q9H091 742 aa13.75□□□□□ -0.21
FAM3A-221ENST00000612856 POGZQ7Z3K3 1410 aa13.75□□□□□ -0.21
FAM3A-221ENST00000612856 DIAPH1O60610 1272 aaKnown RBP13.75□□□□□ -0.21
FAM3A-221ENST00000612856 FRAT2O75474 233 aaPredicted RBP13.75□□□□□ -0.21
FAM3A-221ENST00000612856 PODXL2Q9NZ53 605 aa13.75□□□□□ -0.21
FAM3A-221ENST00000612856 NCKAP5LQ9HCH0 1330 aa13.75□□□□□ -0.21
FAM3A-221ENST00000612856 PRDM11Q9NQV5 511 aa13.74□□□□□ -0.21
FAM3A-221ENST00000612856 GTF2E1P29083 439 aaPredicted RBP13.74□□□□□ -0.21
FAM3A-221ENST00000612856 ITPRIPQ8IWB1 547 aa13.74□□□□□ -0.21
FAM3A-221ENST00000612856 ZCCHC11Q5TAX3 1644 aaKnown RBP13.74□□□□□ -0.21
FAM3A-221ENST00000612856 PRAG1Q86YV5 1406 aa13.74□□□□□ -0.21
FAM3A-221ENST00000612856 FAM177BA6PVY3 158 aa13.74□□□□□ -0.21
FAM3A-221ENST00000612856 ADCY10Q96PN6 1610 aa13.73□□□□□ -0.21
FAM3A-221ENST00000612856 A2MP01023 1474 aa13.73□□□□□ -0.21
FAM3A-221ENST00000612856 TESK2Q96S53 571 aa13.73□□□□□ -0.21
FAM3A-221ENST00000612856 PLA2R1Q13018 1463 aa13.73□□□□□ -0.21
FAM3A-221ENST00000612856 DHX29Q7Z478 1369 aaKnown RBP13.73□□□□□ -0.21
FAM3A-221ENST00000612856 RIPK4P57078 832 aa13.73□□□□□ -0.21
FAM3A-221ENST00000612856 C1orf141Q5JVX7 400 aa13.73□□□□□ -0.21
FAM3A-221ENST00000612856 NUDT16Q96DE0 195 aaKnown RBP13.73□□□□□ -0.21
FAM3A-221ENST00000612856 RAPGEF4Q8WZA2 1011 aa13.72□□□□□ -0.21
FAM3A-221ENST00000612856 PREX2Q70Z35 1606 aa13.72□□□□□ -0.21
FAM3A-221ENST00000612856 USHBP1Q8N6Y0 703 aa13.72□□□□□ -0.21
FAM3A-221ENST00000612856 RALGAPBQ86X10 1494 aa13.72□□□□□ -0.21
FAM3A-221ENST00000612856 ADAMTS8Q9UP79 889 aa13.72□□□□□ -0.21
FAM3A-221ENST00000612856 GOLGA2Q08379 1002 aa13.71□□□□□ -0.21
FAM3A-221ENST00000612856 DUOX2Q9NRD8 1548 aa13.71□□□□□ -0.21
FAM3A-221ENST00000612856 UPF2Q9HAU5 1272 aaKnown RBP13.71□□□□□ -0.22
FAM3A-221ENST00000612856 RCAN3Q9UKA8 241 aa13.71□□□□□ -0.22
FAM3A-221ENST00000612856 CHRNA2Q15822 529 aa13.7□□□□□ -0.22
FAM3A-221ENST00000612856 MYO5CQ9NQX4 1742 aa13.7□□□□□ -0.22
FAM3A-221ENST00000612856 AIMP1Q12904 312 aaKnown RBP13.7□□□□□ -0.22
FAM3A-221ENST00000612856 TOM1L2Q6ZVM7 507 aa13.7□□□□□ -0.22
FAM3A-221ENST00000612856 CABLES1Q8TDN4 633 aa13.7□□□□□ -0.22
FAM3A-221ENST00000612856 STK31Q9BXU1 1019 aa13.7□□□□□ -0.22
FAM3A-221ENST00000612856 PPP6R1Q9UPN7 881 aa13.7□□□□□ -0.22
FAM3A-221ENST00000612856 NME9Q86XW9 330 aa13.7□□□□□ -0.22
FAM3A-221ENST00000612856 SULT6B1Q6IMI4 303 aa13.69□□□□□ -0.22
FAM3A-221ENST00000612856 ARHGEF5Q12774 1597 aa13.69□□□□□ -0.22
FAM3A-221ENST00000612856 UBAP1LF5GYI3 381 aa13.68□□□□□ -0.22
FAM3A-221ENST00000612856 CCDC61Q9Y6R9 512 aa13.68□□□□□ -0.22
FAM3A-221ENST00000612856 GPRASP1Q5JY77 1395 aa13.68□□□□□ -0.22
FAM3A-221ENST00000612856 TRIM44Q96DX7 344 aaPredicted RBP13.68□□□□□ -0.22
FAM3A-221ENST00000612856 UGGT1Q9NYU2 1555 aa13.67□□□□□ -0.22
FAM3A-221ENST00000612856 CROCC2H7BZ55 1655 aa13.67□□□□□ -0.22
FAM3A-221ENST00000612856 PRKAR2BP31323 418 aa13.67□□□□□ -0.22
FAM3A-221ENST00000612856 THUMPD2Q9BTF0 503 aaKnown RBP13.67□□□□□ -0.22
FAM3A-221ENST00000612856 DDX17Q92841 729 aaKnown RBP13.66□□□□□ -0.22
FAM3A-221ENST00000612856 PPP1R1BQ9UD71 204 aaPredicted RBP13.66□□□□□ -0.22
FAM3A-221ENST00000612856 RTEL1-TNFRSF6BF6WH68 1400 aa13.66□□□□□ -0.22
FAM3A-221ENST00000612856 BCORL1Q5H9F3 1711 aa13.66□□□□□ -0.22
FAM3A-221ENST00000612856 PPP2R1AP30153 589 aa13.66□□□□□ -0.22
FAM3A-221ENST00000612856 NOS1P29475 1434 aa13.65□□□□□ -0.22
FAM3A-221ENST00000612856 AMER1Q5JTC6 1135 aaPredicted RBP13.65□□□□□ -0.22
FAM3A-221ENST00000612856 BACH2Q9BYV9 841 aa13.64□□□□□ -0.23
FAM3A-221ENST00000612856 DNAJC5Q9H3Z4 198 aa13.64□□□□□ -0.23
FAM3A-221ENST00000612856 MIS18AQ9NYP9 233 aa13.64□□□□□ -0.23
FAM3A-221ENST00000612856 RBM42Q9BTD8 480 aaKnown RBP13.64□□□□□ -0.23
FAM3A-221ENST00000612856 UHRF1BP1Q6BDS2 1440 aa13.64□□□□□ -0.23
FAM3A-221ENST00000612856 TTC5Q8N0Z6 440 aa13.64□□□□□ -0.23
FAM3A-221ENST00000612856 ZRANB1Q9UGI0 708 aa13.64□□□□□ -0.23
FAM3A-221ENST00000612856 NAP1L2Q9ULW6 460 aaPredicted RBP13.64□□□□□ -0.23
FAM3A-221ENST00000612856 PER1O15534 1290 aaPredicted RBP13.64□□□□□ -0.23
FAM3A-221ENST00000612856 KCNA6P17658 529 aa13.63□□□□□ -0.23
FAM3A-221ENST00000612856 CLASP1Q7Z460 1538 aa13.63□□□□□ -0.23
FAM3A-221ENST00000612856 DCTN1Q14203 1278 aa13.63□□□□□ -0.23
FAM3A-221ENST00000612856 EMILIN1Q9Y6C2 1016 aa13.63□□□□□ -0.23
FAM3A-221ENST00000612856 ABCC1P33527 1531 aa13.63□□□□□ -0.23
FAM3A-221ENST00000612856 FAM43AQ8N2R8 423 aa13.63□□□□□ -0.23
FAM3A-221ENST00000612856 TCP11L2Q8N4U5 519 aa13.63□□□□□ -0.23
FAM3A-221ENST00000612856 COG6Q9Y2V7 657 aa13.63□□□□□ -0.23
FAM3A-221ENST00000612856 BRD4O60885 1362 aaPredicted RBP13.63□□□□□ -0.23
FAM3A-221ENST00000612856 TSR2Q969E8 191 aaKnown RBP13.62□□□□□ -0.23
FAM3A-221ENST00000612856 ATP7AQ04656 1500 aa13.62□□□□□ -0.23
FAM3A-221ENST00000612856 TULP1O00294 542 aaPredicted RBP13.62□□□□□ -0.23
FAM3A-221ENST00000612856 NGLY1Q96IV0 654 aa13.62□□□□□ -0.23
FAM3A-221ENST00000612856 PHF8Q9UPP1 1060 aa13.61□□□□□ -0.23
FAM3A-221ENST00000612856 RRP1P56182 461 aaKnown RBP13.61□□□□□ -0.23
FAM3A-221ENST00000612856 TNRQ92752 1358 aa13.61□□□□□ -0.23
FAM3A-221ENST00000612856 TAF7LQ5H9L4 462 aa13.61□□□□□ -0.23
FAM3A-221ENST00000612856 TSPYL4Q9UJ04 414 aa13.61□□□□□ -0.23
FAM3A-221ENST00000612856 ISY1Q9ULR0 285 aaKnown RBP13.6□□□□□ -0.23
FAM3A-221ENST00000612856 SHROOM2Q13796 1616 aa13.6□□□□□ -0.23
FAM3A-221ENST00000612856 UHRF1BP1LA0JNW5 1464 aa13.6□□□□□ -0.23
FAM3A-221ENST00000612856 KDM5CP41229 1560 aa13.6□□□□□ -0.23
FAM3A-221ENST00000612856 PTCD1O75127 700 aaKnown RBP13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 70.6 ms