RNA–Protein interactions for RNA: ENST00000611848.1

SMAD4-217, Transcript of SMAD family member 4, humanhuman

TSL 5

Gene SMAD4, Length 1,648 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-217ENST00000611848 ADGRL3Q9HAR2 1447 aa12.57□□□□□ -0.4
SMAD4-217ENST00000611848 ATF3P18847 181 aa12.57□□□□□ -0.4
SMAD4-217ENST00000611848 DLC1Q96QB1 1528 aa12.57□□□□□ -0.4
SMAD4-217ENST00000611848 WAPLQ7Z5K2 1190 aa12.56□□□□□ -0.4
SMAD4-217ENST00000611848 NBPF1Q3BBV0 1214 aa12.55□□□□□ -0.4
SMAD4-217ENST00000611848 TRAK1Q9UPV9 953 aa12.55□□□□□ -0.4
SMAD4-217ENST00000611848 TRPM1Q7Z4N2 1603 aa12.55□□□□□ -0.4
SMAD4-217ENST00000611848 PIP4K2BP78356 416 aa12.55□□□□□ -0.4
SMAD4-217ENST00000611848 NBPF8Q3BBV2 869 aa12.55□□□□□ -0.4
SMAD4-217ENST00000611848 NALCNQ8IZF0 1738 aa12.54□□□□□ -0.4
SMAD4-217ENST00000611848 SCAF1Q9H7N4 1312 aaKnown RBP12.54□□□□□ -0.4
SMAD4-217ENST00000611848 DIEXFQ68CQ4 756 aaKnown RBP12.54□□□□□ -0.4
SMAD4-217ENST00000611848 PRAM1Q96QH2 718 aa12.54□□□□□ -0.4
SMAD4-217ENST00000611848 POGKQ9P215 609 aa12.54□□□□□ -0.4
SMAD4-217ENST00000611848 SLAIN2Q9P270 581 aa12.54□□□□□ -0.4
SMAD4-217ENST00000611848 PLEKHH1Q9ULM0 1364 aa12.54□□□□□ -0.4
SMAD4-217ENST00000611848 ROCK2O75116 1388 aaKnown RBP12.52□□□□□ -0.41
SMAD4-217ENST00000611848 ARHGEF28Q8N1W1 1705 aaKnown RBP12.52□□□□□ -0.41
SMAD4-217ENST00000611848 GPRASP1Q5JY77 1395 aa12.51□□□□□ -0.41
SMAD4-217ENST00000611848 CDC42BPGQ6DT37 1551 aa12.5□□□□□ -0.41
SMAD4-217ENST00000611848 SAFB2Q14151 953 aaKnown RBP eCLIP12.5□□□□□ -0.41
SMAD4-217ENST00000611848 MST1RQ04912 1400 aa12.5□□□□□ -0.41
SMAD4-217ENST00000611848 ROBO1Q9Y6N7 1651 aa12.49□□□□□ -0.41
SMAD4-217ENST00000611848 RALGAPBQ86X10 1494 aa12.49□□□□□ -0.41
SMAD4-217ENST00000611848 CARD11Q9BXL7 1154 aa12.48□□□□□ -0.41
SMAD4-217ENST00000611848 C1orf167Q5SNV9 1468 aa12.47□□□□□ -0.41
SMAD4-217ENST00000611848 EIF3AQ14152 1382 aaKnown RBP12.47□□□□□ -0.41
SMAD4-217ENST00000611848 ADGRB2O60241 1585 aa12.47□□□□□ -0.41
SMAD4-217ENST00000611848 CENPJQ9HC77 1338 aaPredicted RBP12.47□□□□□ -0.41
SMAD4-217ENST00000611848 HSPA1LP34931 641 aa12.46□□□□□ -0.41
SMAD4-217ENST00000611848 BRINP3Q76B58 766 aa12.46□□□□□ -0.41
SMAD4-217ENST00000611848 MINK1Q8N4C8 1332 aaPredicted RBP12.46□□□□□ -0.42
SMAD4-217ENST00000611848 FMN2Q9NZ56 1722 aa12.46□□□□□ -0.42
SMAD4-217ENST00000611848 WASLO00401 505 aaPredicted RBP12.44□□□□□ -0.42
SMAD4-217ENST00000611848 HIRIP3Q9BW71 556 aaPredicted RBP12.44□□□□□ -0.42
SMAD4-217ENST00000611848 NUTM2FA1L443 756 aa12.43□□□□□ -0.42
SMAD4-217ENST00000611848 ESCO1Q5FWF5 840 aa12.43□□□□□ -0.42
SMAD4-217ENST00000611848 ORAI2Q96SN7 254 aa12.43□□□□□ -0.42
SMAD4-217ENST00000611848 ANKARQ7Z5J8 1434 aa12.43□□□□□ -0.42
SMAD4-217ENST00000611848 AHDC1Q5TGY3 1603 aaPredicted RBP12.42□□□□□ -0.42
SMAD4-217ENST00000611848 QRICH2Q9H0J4 1663 aa12.42□□□□□ -0.42
SMAD4-217ENST00000611848 PHLPP1O60346 1717 aa12.42□□□□□ -0.42
SMAD4-217ENST00000611848 RGPD8O14715 1765 aaPredicted RBP12.42□□□□□ -0.42
SMAD4-217ENST00000611848 NPM3O75607 178 aaKnown RBP12.41□□□□□ -0.42
SMAD4-217ENST00000611848 NHSL1Q5SYE7 1610 aa12.4□□□□□ -0.42
SMAD4-217ENST00000611848 CDK19Q9BWU1 502 aa12.4□□□□□ -0.42
SMAD4-217ENST00000611848 TULP4Q9NRJ4 1543 aa12.4□□□□□ -0.42
SMAD4-217ENST00000611848 SBNO2Q9Y2G9 1366 aa12.4□□□□□ -0.42
SMAD4-217ENST00000611848 KIF1AQ12756 1690 aa12.39□□□□□ -0.43
SMAD4-217ENST00000611848 NPHP3Q7Z494 1330 aa12.39□□□□□ -0.43
SMAD4-217ENST00000611848 SLC24A1O60721 1099 aa12.39□□□□□ -0.43
SMAD4-217ENST00000611848 PHF8Q9UPP1 1060 aa12.39□□□□□ -0.43
SMAD4-217ENST00000611848 USP32Q8NFA0 1604 aa12.39□□□□□ -0.43
SMAD4-217ENST00000611848 EVC2Q86UK5 1308 aa12.38□□□□□ -0.43
SMAD4-217ENST00000611848 NUDT16Q96DE0 195 aaKnown RBP12.38□□□□□ -0.43
SMAD4-217ENST00000611848 ITSN1Q15811 1721 aa12.38□□□□□ -0.43
SMAD4-217ENST00000611848 USP47Q96K76 1375 aa12.38□□□□□ -0.43
SMAD4-217ENST00000611848 SOS2Q07890 1332 aaPredicted RBP12.37□□□□□ -0.43
SMAD4-217ENST00000611848 PRR36Q9H6K5 1346 aa12.37□□□□□ -0.43
SMAD4-217ENST00000611848 COL16A1Q07092 1604 aaPredicted RBP12.37□□□□□ -0.43
SMAD4-217ENST00000611848 SRPK2P78362 688 aaKnown RBP12.37□□□□□ -0.43
SMAD4-217ENST00000611848 ST20-MTHFSA0A0A6YYL1 179 aa12.37□□□□□ -0.43
SMAD4-217ENST00000611848 FOXO3O43524 673 aa12.37□□□□□ -0.43
SMAD4-217ENST00000611848 DDX17Q92841 729 aaKnown RBP12.37□□□□□ -0.43
SMAD4-217ENST00000611848 LRRC59Q96AG4 307 aaKnown RBP12.37□□□□□ -0.43
SMAD4-217ENST00000611848 CCDC61Q9Y6R9 512 aa12.37□□□□□ -0.43
SMAD4-217ENST00000611848 ATP7BP35670 1465 aa12.36□□□□□ -0.43
SMAD4-217ENST00000611848 CABP2Q9NPB3 220 aa12.36□□□□□ -0.43
SMAD4-217ENST00000611848 JCADQ9P266 1359 aa12.35□□□□□ -0.43
SMAD4-217ENST00000611848 PMFBP1Q8TBY8 1022 aa12.35□□□□□ -0.43
SMAD4-217ENST00000611848 TESK2Q96S53 571 aa12.34□□□□□ -0.43
SMAD4-217ENST00000611848 PLEKHG3A1L390 1219 aa12.33□□□□□ -0.43
SMAD4-217ENST00000611848 PSME1Q06323 249 aa12.33□□□□□ -0.43
SMAD4-217ENST00000611848 TOPAZ1Q8N9V7 1692 aa12.33□□□□□ -0.44
SMAD4-217ENST00000611848 PXDNQ92626 1479 aa12.33□□□□□ -0.44
SMAD4-217ENST00000611848 KRT28Q7Z3Y7 464 aa12.33□□□□□ -0.44
SMAD4-217ENST00000611848 NGDNQ8NEJ9 315 aaKnown RBP12.33□□□□□ -0.44
SMAD4-217ENST00000611848 PUS7Q96PZ0 661 aaKnown RBP12.33□□□□□ -0.44
SMAD4-217ENST00000611848 ATAD2Q6PL18 1390 aa12.32□□□□□ -0.44
SMAD4-217ENST00000611848 SHPRHQ149N8 1683 aa12.32□□□□□ -0.44
SMAD4-217ENST00000611848 PPIP5K1Q6PFW1 1433 aa12.31□□□□□ -0.44
SMAD4-217ENST00000611848 EIF4G2P78344 907 aaKnown RBP eCLIP12.31□□□□□ -0.44
SMAD4-217ENST00000611848 XPCQ01831 940 aaPredicted RBP12.31□□□□□ -0.44
SMAD4-217ENST00000611848 SPATA31A6Q5VVP1 1343 aa12.31□□□□□ -0.44
SMAD4-217ENST00000611848 SBNO1A3KN83 1393 aa12.3□□□□□ -0.44
SMAD4-217ENST00000611848 POLR3AO14802 1390 aaPredicted RBP12.3□□□□□ -0.44
SMAD4-217ENST00000611848 TMF1P82094 1093 aa12.3□□□□□ -0.44
SMAD4-217ENST00000611848 MIER1Q8N108 512 aa12.3□□□□□ -0.44
SMAD4-217ENST00000611848 CABP1Q9NZU7 370 aa12.3□□□□□ -0.44
SMAD4-217ENST00000611848 ACEP12821 1306 aa12.3□□□□□ -0.44
SMAD4-217ENST00000611848 PNPLA6Q8IY17 1366 aa12.3□□□□□ -0.44
SMAD4-217ENST00000611848 SPATA31A3Q5VYP0 1347 aa12.29□□□□□ -0.44
SMAD4-217ENST00000611848 CDCA8Q53HL2 280 aa12.29□□□□□ -0.44
SMAD4-217ENST00000611848 TNS3Q68CZ2 1445 aa12.28□□□□□ -0.44
SMAD4-217ENST00000611848 BRD4O60885 1362 aaPredicted RBP12.27□□□□□ -0.44
SMAD4-217ENST00000611848 HSPA5P11021 654 aaKnown RBP12.27□□□□□ -0.44
SMAD4-217ENST00000611848 ZNF692Q9BU19 519 aaPredicted RBP12.27□□□□□ -0.44
SMAD4-217ENST00000611848 TRPM3Q9HCF6 1732 aaPredicted RBP12.27□□□□□ -0.44
SMAD4-217ENST00000611848 ARHGEF10O15013 1369 aa12.27□□□□□ -0.45
SMAD4-217ENST00000611848 COL22A1Q8NFW1 1626 aaPredicted RBP12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms