RNA–Protein interactions for RNA: ENST00000602557.5

CSMD1-216, Transcript of CUB and Sushi multiple domains 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CSMD1, Length 11,740 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-216ENST00000602557 PCMTD1Q96MG8 357 aaPredicted RBP10.49□□□□□ -0.73
CSMD1-216ENST00000602557 IRX3P78415 501 aaPredicted RBP10.49□□□□□ -0.73
CSMD1-216ENST00000602557 RAD21O60216 631 aa10.49□□□□□ -0.73
CSMD1-216ENST00000602557 C1orf141Q5JVX7 400 aa10.49□□□□□ -0.73
CSMD1-216ENST00000602557 COG3Q96JB2 828 aa10.49□□□□□ -0.73
CSMD1-216ENST00000602557 VPS37CA5D8V6 355 aaPredicted RBP10.49□□□□□ -0.73
CSMD1-216ENST00000602557 TRIM5Q9C035 493 aa10.49□□□□□ -0.73
CSMD1-216ENST00000602557 STK11IPQ8N1F8 1099 aa10.48□□□□□ -0.73
CSMD1-216ENST00000602557 DHX57Q6P158 1386 aaKnown RBP10.48□□□□□ -0.73
CSMD1-216ENST00000602557 FAM193AP78312 1265 aa10.48□□□□□ -0.73
CSMD1-216ENST00000602557 CPLX1O14810 134 aa10.48□□□□□ -0.73
CSMD1-216ENST00000602557 ZKSCAN1P17029 563 aaPredicted RBP10.47□□□□□ -0.73
CSMD1-216ENST00000602557 EIF2S2P20042 333 aaKnown RBP10.47□□□□□ -0.73
CSMD1-216ENST00000602557 NAP1L1P55209 391 aaKnown RBP10.47□□□□□ -0.73
CSMD1-216ENST00000602557 SYNE3Q6ZMZ3 975 aa10.47□□□□□ -0.73
CSMD1-216ENST00000602557 TICAM2Q86XR7 235 aa10.47□□□□□ -0.73
CSMD1-216ENST00000602557 SASS6Q6UVJ0 657 aa10.47□□□□□ -0.73
CSMD1-216ENST00000602557 RUFY2Q8WXA3 655 aa10.47□□□□□ -0.73
CSMD1-216ENST00000602557 SPDYE4A6NLX3 237 aa10.47□□□□□ -0.73
CSMD1-216ENST00000602557 EVC2Q86UK5 1308 aa10.47□□□□□ -0.73
CSMD1-216ENST00000602557 PDS5BQ9NTI5 1447 aa10.47□□□□□ -0.73
CSMD1-216ENST00000602557 IPO7O95373 1038 aaKnown RBP10.47□□□□□ -0.73
CSMD1-216ENST00000602557 DCTN1Q14203 1278 aa10.47□□□□□ -0.73
CSMD1-216ENST00000602557 PRKRIP1Q9H875 184 aaPredicted RBP10.47□□□□□ -0.73
CSMD1-216ENST00000602557 CCDC112Q8NEF3 446 aa10.47□□□□□ -0.73
CSMD1-216ENST00000602557 TRIM29Q14134 588 aa10.47□□□□□ -0.73
CSMD1-216ENST00000602557 SMC2O95347 1197 aa10.46□□□□□ -0.73
CSMD1-216ENST00000602557 MINK1Q8N4C8 1332 aaPredicted RBP10.46□□□□□ -0.73
CSMD1-216ENST00000602557 IFIT2P09913 472 aaKnown RBP10.46□□□□□ -0.73
CSMD1-216ENST00000602557 XPCQ01831 940 aaPredicted RBP10.46□□□□□ -0.74
CSMD1-216ENST00000602557 RSPH4AQ5TD94 716 aa10.46□□□□□ -0.74
CSMD1-216ENST00000602557 NEXNQ0ZGT2 675 aa10.46□□□□□ -0.74
CSMD1-216ENST00000602557 DDX19BQ9UMR2 479 aa10.46□□□□□ -0.74
CSMD1-216ENST00000602557 ANKRD20A12PQ8NF67 263 aa10.46□□□□□ -0.74
CSMD1-216ENST00000602557 PDCL3Q9H2J4 239 aa10.46□□□□□ -0.74
CSMD1-216ENST00000602557 APAF1O14727 1248 aa10.45□□□□□ -0.74
CSMD1-216ENST00000602557 CDR1P51861 262 aa10.45□□□□□ -0.74
CSMD1-216ENST00000602557 NUCB2P80303 420 aa10.45□□□□□ -0.74
CSMD1-216ENST00000602557 DYDC1Q8WWB3 177 aa10.45□□□□□ -0.74
CSMD1-216ENST00000602557 CT47B1P0C2W7 299 aaPredicted RBP10.45□□□□□ -0.74
CSMD1-216ENST00000602557 PPP4R3BQ5MIZ7 849 aa10.45□□□□□ -0.74
CSMD1-216ENST00000602557 LRRFIP1Q32MZ4 808 aaKnown RBP10.45□□□□□ -0.74
CSMD1-216ENST00000602557 TTC5Q8N0Z6 440 aa10.45□□□□□ -0.74
CSMD1-216ENST00000602557 CHMP4CQ96CF2 233 aa10.45□□□□□ -0.74
CSMD1-216ENST00000602557 ROCK1Q13464 1354 aa10.45□□□□□ -0.74
CSMD1-216ENST00000602557 PDIA4P13667 645 aaKnown RBP10.45□□□□□ -0.74
CSMD1-216ENST00000602557 TEFQ10587 303 aa10.45□□□□□ -0.74
CSMD1-216ENST00000602557 DZIP1LQ8IYY4 767 aaKnown RBP10.45□□□□□ -0.74
CSMD1-216ENST00000602557 CCDC27Q2M243 656 aa10.44□□□□□ -0.74
CSMD1-216ENST00000602557 NFXL1Q6ZNB6 911 aa10.44□□□□□ -0.74
CSMD1-216ENST00000602557 PRPF40AO75400 957 aaKnown RBP10.44□□□□□ -0.74
CSMD1-216ENST00000602557 TRIM34Q9BYJ4 488 aa10.44□□□□□ -0.74
CSMD1-216ENST00000602557 HOOK1Q9UJC3 728 aaKnown RBP10.44□□□□□ -0.74
CSMD1-216ENST00000602557 VPS37DQ86XT2 251 aa10.44□□□□□ -0.74
CSMD1-216ENST00000602557 SMARCA4P51532 1647 aa10.44□□□□□ -0.74
CSMD1-216ENST00000602557 NOL10Q9BSC4 688 aaKnown RBP10.44□□□□□ -0.74
CSMD1-216ENST00000602557 DHX16O60231 1041 aaKnown RBP10.43□□□□□ -0.74
CSMD1-216ENST00000602557 POLR3GO15318 223 aaPredicted RBP10.43□□□□□ -0.74
CSMD1-216ENST00000602557 GTF2A1P52655 376 aaPredicted RBP10.43□□□□□ -0.74
CSMD1-216ENST00000602557 GTF2F1P35269 517 aaKnown RBP eCLIP10.43□□□□□ -0.74
CSMD1-216ENST00000602557 CPLX2Q6PUV4 134 aaKnown RBP10.43□□□□□ -0.74
CSMD1-216ENST00000602557 VGLL3A8MV65 326 aa10.42□□□□□ -0.74
CSMD1-216ENST00000602557 CALCOCO1Q9P1Z2 691 aa10.42□□□□□ -0.74
CSMD1-216ENST00000602557 USP8P40818 1118 aa10.42□□□□□ -0.74
CSMD1-216ENST00000602557 RIPK4P57078 832 aa10.42□□□□□ -0.74
CSMD1-216ENST00000602557 ERCC4Q92889 916 aaPredicted RBP10.42□□□□□ -0.74
CSMD1-216ENST00000602557 AMOTL1Q8IY63 956 aa10.42□□□□□ -0.74
CSMD1-216ENST00000602557 PANK1Q8TE04 598 aa10.42□□□□□ -0.74
CSMD1-216ENST00000602557 RNF20Q5VTR2 975 aa10.42□□□□□ -0.74
CSMD1-216ENST00000602557 SMC3Q9UQE7 1217 aa10.41□□□□□ -0.74
CSMD1-216ENST00000602557 FKBP5Q13451 457 aaPredicted RBP10.41□□□□□ -0.74
CSMD1-216ENST00000602557 LNPKQ9C0E8 428 aa10.41□□□□□ -0.74
CSMD1-216ENST00000602557 CUX1P39880 1505 aa10.41□□□□□ -0.74
CSMD1-216ENST00000602557 G3BP1Q13283 466 aaKnown RBP eCLIP10.41□□□□□ -0.74
CSMD1-216ENST00000602557 TRDNQ13061 729 aa10.41□□□□□ -0.74
CSMD1-216ENST00000602557 CCDC73Q6ZRK6 1079 aa10.4□□□□□ -0.74
CSMD1-216ENST00000602557 ZSCAN30Q86W11 494 aa10.4□□□□□ -0.74
CSMD1-216ENST00000602557 FAM177A1Q8N128 213 aaPredicted RBP10.4□□□□□ -0.74
CSMD1-216ENST00000602557 AKNAQ7Z591 1439 aa10.4□□□□□ -0.74
CSMD1-216ENST00000602557 SYTL4Q96C24 671 aaPredicted RBP10.4□□□□□ -0.74
CSMD1-216ENST00000602557 EVA1CP58658 441 aa10.4□□□□□ -0.74
CSMD1-216ENST00000602557 INTS3Q68E01 1043 aaKnown RBP10.4□□□□□ -0.74
CSMD1-216ENST00000602557 DIAPH1O60610 1272 aaKnown RBP10.39□□□□□ -0.75
CSMD1-216ENST00000602557 CCDC102AQ96A19 550 aa10.39□□□□□ -0.75
CSMD1-216ENST00000602557 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.39□□□□□ -0.75
CSMD1-216ENST00000602557 CTDP1Q9Y5B0 961 aaPredicted RBP10.39□□□□□ -0.75
CSMD1-216ENST00000602557 TIGD1Q96MW7 591 aa10.38□□□□□ -0.75
CSMD1-216ENST00000602557 CCDC43Q96MW1 224 aaKnown RBP10.38□□□□□ -0.75
CSMD1-216ENST00000602557 CCDC47Q96A33 483 aaKnown RBP10.38□□□□□ -0.75
CSMD1-216ENST00000602557 FMNL2Q96PY5 1086 aa10.38□□□□□ -0.75
CSMD1-216ENST00000602557 API5Q9BZZ5 524 aaKnown RBP10.38□□□□□ -0.75
CSMD1-216ENST00000602557 HMOX1P09601 288 aa10.38□□□□□ -0.75
CSMD1-216ENST00000602557 FIBPO43427 364 aa10.38□□□□□ -0.75
CSMD1-216ENST00000602557 SAFBQ15424 915 aaKnown RBP eCLIP10.37□□□□□ -0.75
CSMD1-216ENST00000602557 INCENPQ9NQS7 918 aa10.37□□□□□ -0.75
CSMD1-216ENST00000602557 ERC2O15083 957 aa10.37□□□□□ -0.75
CSMD1-216ENST00000602557 MCM4P33991 863 aa10.37□□□□□ -0.75
CSMD1-216ENST00000602557 RUNDC1Q96C34 613 aa10.37□□□□□ -0.75
CSMD1-216ENST00000602557 BACH2Q9BYV9 841 aa10.37□□□□□ -0.75
CSMD1-216ENST00000602557 CNTLNQ9NXG0 1405 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 87.2 ms