RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-223ENST00000601341 WAPLQ7Z5K2 1190 aa16■□□□□ 0.15
VRK3-223ENST00000601341 PUS7Q96PZ0 661 aaKnown RBP16■□□□□ 0.15
VRK3-223ENST00000601341 AMOTL2Q9Y2J4 779 aa16■□□□□ 0.15
VRK3-223ENST00000601341 PTPRUQ92729 1446 aa15.98■□□□□ 0.15
VRK3-223ENST00000601341 CPS1P31327 1500 aa15.98■□□□□ 0.15
VRK3-223ENST00000601341 MINK1Q8N4C8 1332 aaPredicted RBP15.98■□□□□ 0.15
VRK3-223ENST00000601341 ROBO2Q9HCK4 1378 aa15.97■□□□□ 0.15
VRK3-223ENST00000601341 KNDC1Q76NI1 1749 aa15.97■□□□□ 0.15
VRK3-223ENST00000601341 PLEKHH1Q9ULM0 1364 aa15.97■□□□□ 0.15
VRK3-223ENST00000601341 LMTK3Q96Q04 1460 aa15.96■□□□□ 0.15
VRK3-223ENST00000601341 HSPA2P54652 639 aa15.96■□□□□ 0.15
VRK3-223ENST00000601341 PTCH1Q13635 1447 aa15.95■□□□□ 0.14
VRK3-223ENST00000601341 SRPK2P78362 688 aaKnown RBP15.94■□□□□ 0.14
VRK3-223ENST00000601341 TULP4Q9NRJ4 1543 aa15.94■□□□□ 0.14
VRK3-223ENST00000601341 PANK3Q9H999 370 aa15.93■□□□□ 0.14
VRK3-223ENST00000601341 KCNA6P17658 529 aa15.92■□□□□ 0.14
VRK3-223ENST00000601341 CDK19Q9BWU1 502 aa15.92■□□□□ 0.14
VRK3-223ENST00000601341 CABP2Q9NPB3 220 aa15.92■□□□□ 0.14
VRK3-223ENST00000601341 ATAD2Q6PL18 1390 aa15.91■□□□□ 0.14
VRK3-223ENST00000601341 WASLO00401 505 aaPredicted RBP15.9■□□□□ 0.14
VRK3-223ENST00000601341 TMC1Q8TDI8 760 aa15.9■□□□□ 0.14
VRK3-223ENST00000601341 XRN1Q8IZH2 1706 aaKnown RBP15.9■□□□□ 0.14
VRK3-223ENST00000601341 PER1O15534 1290 aaPredicted RBP15.9■□□□□ 0.14
VRK3-223ENST00000601341 NINLQ9Y2I6 1382 aa15.89■□□□□ 0.13
VRK3-223ENST00000601341 SLC12A5Q9H2X9 1139 aa15.88■□□□□ 0.13
VRK3-223ENST00000601341 PRKRIP1Q9H875 184 aaPredicted RBP15.88■□□□□ 0.13
VRK3-223ENST00000601341 KNSTRNQ9Y448 316 aa15.87■□□□□ 0.13
VRK3-223ENST00000601341 CHD2O14647 1828 aaKnown RBP15.87■□□□□ 0.13
VRK3-223ENST00000601341 MYOM1P52179 1685 aa15.86■□□□□ 0.13
VRK3-223ENST00000601341 ADGRB2O60241 1585 aa15.85■□□□□ 0.13
VRK3-223ENST00000601341 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.84■□□□□ 0.13
VRK3-223ENST00000601341 KTN1Q86UP2 1357 aaKnown RBP15.83■□□□□ 0.13
VRK3-223ENST00000601341 NEFLP07196 543 aa15.83■□□□□ 0.12
VRK3-223ENST00000601341 NUDT16Q96DE0 195 aaKnown RBP15.83■□□□□ 0.12
VRK3-223ENST00000601341 TERF2IPQ9NYB0 399 aa15.83■□□□□ 0.12
VRK3-223ENST00000601341 ANKRD36BQ8N2N9 1353 aa15.83■□□□□ 0.12
VRK3-223ENST00000601341 CARD14Q9BXL6 1004 aa15.82■□□□□ 0.12
VRK3-223ENST00000601341 CABP1Q9NZU7 370 aa15.82■□□□□ 0.12
VRK3-223ENST00000601341 CCDC61Q9Y6R9 512 aa15.82■□□□□ 0.12
VRK3-223ENST00000601341 NWD1Q149M9 1564 aa15.82■□□□□ 0.12
VRK3-223ENST00000601341 CNGB1Q14028 1251 aaPredicted RBP15.82■□□□□ 0.12
VRK3-223ENST00000601341 RALBP1Q15311 655 aa15.82■□□□□ 0.12
VRK3-223ENST00000601341 PROSER2Q86WR7 435 aaPredicted RBP15.81■□□□□ 0.12
VRK3-223ENST00000601341 DMRT2Q9Y5R5 561 aa15.81■□□□□ 0.12
VRK3-223ENST00000601341 NKTRP30414 1462 aaKnown RBP15.81■□□□□ 0.12
VRK3-223ENST00000601341 STRCQ7RTU9 1775 aa15.8■□□□□ 0.12
VRK3-223ENST00000601341 AMER1Q5JTC6 1135 aaPredicted RBP15.8■□□□□ 0.12
VRK3-223ENST00000601341 HDGFL2Q7Z4V5 671 aaPredicted RBP15.8■□□□□ 0.12
VRK3-223ENST00000601341 NPC1L1Q9UHC9 1359 aa15.8■□□□□ 0.12
VRK3-223ENST00000601341 CC2D1BQ5T0F9 858 aaKnown RBP15.8■□□□□ 0.12
VRK3-223ENST00000601341 PPIP5K1Q6PFW1 1433 aa15.78■□□□□ 0.12
VRK3-223ENST00000601341 C14orf37Q86TY3 774 aa15.78■□□□□ 0.12
VRK3-223ENST00000601341 PRR36Q9H6K5 1346 aa15.78■□□□□ 0.12
VRK3-223ENST00000601341 A0A1W2PP64 1363 aa15.78■□□□□ 0.12
VRK3-223ENST00000601341 NSD3Q9BZ95 1437 aa15.78■□□□□ 0.12
VRK3-223ENST00000601341 ADGRL3Q9HAR2 1447 aa15.78■□□□□ 0.12
VRK3-223ENST00000601341 ATP7BP35670 1465 aa15.78■□□□□ 0.12
VRK3-223ENST00000601341 RBM33Q96EV2 1170 aaKnown RBP15.77■□□□□ 0.12
VRK3-223ENST00000601341 PARD3Q8TEW0 1356 aa15.77■□□□□ 0.12
VRK3-223ENST00000601341 ERICH6BQ5W0A0 696 aa15.77■□□□□ 0.11
VRK3-223ENST00000601341 CGNL1Q0VF96 1302 aa15.77■□□□□ 0.11
VRK3-223ENST00000601341 NUTM2FA1L443 756 aa15.76■□□□□ 0.11
VRK3-223ENST00000601341 MYT1Q01538 1121 aa15.76■□□□□ 0.11
VRK3-223ENST00000601341 ANKARQ7Z5J8 1434 aa15.76■□□□□ 0.11
VRK3-223ENST00000601341 CD163L1Q9NR16 1453 aa15.76■□□□□ 0.11
VRK3-223ENST00000601341 PLEKHG3A1L390 1219 aa15.75■□□□□ 0.11
VRK3-223ENST00000601341 FKBP8Q14318 412 aa15.75■□□□□ 0.11
VRK3-223ENST00000601341 MYBBP1AQ9BQG0 1328 aaKnown RBP15.75■□□□□ 0.11
VRK3-223ENST00000601341 ZNF692Q9BU19 519 aaPredicted RBP15.75■□□□□ 0.11
VRK3-223ENST00000601341 NCOA3Q9Y6Q9 1424 aa15.75■□□□□ 0.11
VRK3-223ENST00000601341 CDC42BPGQ6DT37 1551 aa15.75■□□□□ 0.11
VRK3-223ENST00000601341 CPSF1Q10570 1443 aaKnown RBP15.74■□□□□ 0.11
VRK3-223ENST00000601341 HNRNPUQ00839 825 aaKnown RBP eCLIP15.74■□□□□ 0.11
VRK3-223ENST00000601341 C19orf44Q9H6X5 657 aa15.74■□□□□ 0.11
VRK3-223ENST00000601341 TMEM94Q12767 1356 aa15.73■□□□□ 0.11
VRK3-223ENST00000601341 NALCNQ8IZF0 1738 aa15.73■□□□□ 0.11
VRK3-223ENST00000601341 NSD2O96028 1365 aa15.73■□□□□ 0.11
VRK3-223ENST00000601341 MRS2Q9HD23 443 aa15.72■□□□□ 0.11
VRK3-223ENST00000601341 ZBED9Q6R2W3 1325 aa15.71■□□□□ 0.11
VRK3-223ENST00000601341 ZNF335Q9H4Z2 1342 aaPredicted RBP15.71■□□□□ 0.11
VRK3-223ENST00000601341 NLRP13Q86W25 1043 aa15.71■□□□□ 0.11
VRK3-223ENST00000601341 USP32Q8NFA0 1604 aa15.71■□□□□ 0.11
VRK3-223ENST00000601341 ACEP12821 1306 aa15.7■□□□□ 0.1
VRK3-223ENST00000601341 FMN2Q9NZ56 1722 aa15.7■□□□□ 0.1
VRK3-223ENST00000601341 STRCP1A6NGW2 1772 aa15.7■□□□□ 0.1
VRK3-223ENST00000601341 MORC1Q86VD1 984 aa15.7■□□□□ 0.1
VRK3-223ENST00000601341 EDC4Q6P2E9 1401 aaKnown RBP15.69■□□□□ 0.1
VRK3-223ENST00000601341 BRD4O60885 1362 aaPredicted RBP15.69■□□□□ 0.1
VRK3-223ENST00000601341 TOPAZ1Q8N9V7 1692 aa15.69■□□□□ 0.1
VRK3-223ENST00000601341 CCDC184Q52MB2 194 aa15.69■□□□□ 0.1
VRK3-223ENST00000601341 NGDNQ8NEJ9 315 aaKnown RBP15.69■□□□□ 0.1
VRK3-223ENST00000601341 FYB1O15117 783 aa15.68■□□□□ 0.1
VRK3-223ENST00000601341 ATF3P18847 181 aa15.68■□□□□ 0.1
VRK3-223ENST00000601341 PMFBP1Q8TBY8 1022 aa15.68■□□□□ 0.1
VRK3-223ENST00000601341 POLR3AO14802 1390 aaPredicted RBP15.68■□□□□ 0.1
VRK3-223ENST00000601341 DCCP43146 1447 aa15.68■□□□□ 0.1
VRK3-223ENST00000601341 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.67■□□□□ 0.1
VRK3-223ENST00000601341 ITSN1Q15811 1721 aa15.67■□□□□ 0.1
VRK3-223ENST00000601341 PPP2R1AP30153 589 aa15.67■□□□□ 0.1
VRK3-223ENST00000601341 PHF8Q9UPP1 1060 aa15.67■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms