RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 ACIN1Q9UKV3 1341 aaKnown RBP12.97□□□□□ -0.33
TRIM28-214ENST00000600840 MARF1Q9Y4F3 1742 aaKnown RBP12.96□□□□□ -0.34
TRIM28-214ENST00000600840 LRP5O75197 1615 aa12.95□□□□□ -0.34
TRIM28-214ENST00000600840 FNBP4Q8N3X1 1017 aaPredicted RBP12.95□□□□□ -0.34
TRIM28-214ENST00000600840 C1orf167Q5SNV9 1468 aa12.95□□□□□ -0.34
TRIM28-214ENST00000600840 COL22A1Q8NFW1 1626 aaPredicted RBP12.95□□□□□ -0.34
TRIM28-214ENST00000600840 BRWD3Q6RI45 1802 aa12.95□□□□□ -0.34
TRIM28-214ENST00000600840 ORAI2Q96SN7 254 aa12.94□□□□□ -0.34
TRIM28-214ENST00000600840 MPHOSPH9Q99550 1183 aa12.94□□□□□ -0.34
TRIM28-214ENST00000600840 PTCH1Q13635 1447 aa12.94□□□□□ -0.34
TRIM28-214ENST00000600840 ROBO2Q9HCK4 1378 aa12.94□□□□□ -0.34
TRIM28-214ENST00000600840 SOS2Q07890 1332 aaPredicted RBP12.93□□□□□ -0.34
TRIM28-214ENST00000600840 BCL9LQ86UU0 1499 aa12.93□□□□□ -0.34
TRIM28-214ENST00000600840 VGFO15240 615 aaPredicted RBP12.93□□□□□ -0.34
TRIM28-214ENST00000600840 DEFB132Q7Z7B7 95 aa12.93□□□□□ -0.34
TRIM28-214ENST00000600840 ADGRF5Q8IZF2 1346 aa12.92□□□□□ -0.34
TRIM28-214ENST00000600840 RGL3Q3MIN7 710 aa12.92□□□□□ -0.34
TRIM28-214ENST00000600840 CCDC125Q86Z20 511 aa12.92□□□□□ -0.34
TRIM28-214ENST00000600840 MYOM2P54296 1465 aa12.91□□□□□ -0.34
TRIM28-214ENST00000600840 RPGRIP1LQ68CZ1 1315 aa12.91□□□□□ -0.34
TRIM28-214ENST00000600840 GLI3P10071 1580 aa12.91□□□□□ -0.34
TRIM28-214ENST00000600840 SPATA31E1Q6ZUB1 1445 aa12.91□□□□□ -0.34
TRIM28-214ENST00000600840 IFT172Q9UG01 1749 aa12.91□□□□□ -0.34
TRIM28-214ENST00000600840 BLMP54132 1417 aaPredicted RBP12.9□□□□□ -0.34
TRIM28-214ENST00000600840 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.89□□□□□ -0.35
TRIM28-214ENST00000600840 GJD4Q96KN9 370 aaPredicted RBP12.89□□□□□ -0.35
TRIM28-214ENST00000600840 DHX57Q6P158 1386 aaKnown RBP12.89□□□□□ -0.35
TRIM28-214ENST00000600840 CCDC144AA2RUR9 1427 aa12.88□□□□□ -0.35
TRIM28-214ENST00000600840 EP400Q96L91 3159 aa12.88□□□□□ -0.35
TRIM28-214ENST00000600840 RALGAPBQ86X10 1494 aa12.87□□□□□ -0.35
TRIM28-214ENST00000600840 PSDA5PKW4 1024 aaPredicted RBP12.87□□□□□ -0.35
TRIM28-214ENST00000600840 PRAG1Q86YV5 1406 aa12.87□□□□□ -0.35
TRIM28-214ENST00000600840 XPCQ01831 940 aaPredicted RBP12.86□□□□□ -0.35
TRIM28-214ENST00000600840 TMEM132EQ6IEE7 984 aa12.86□□□□□ -0.35
TRIM28-214ENST00000600840 PXDNQ92626 1479 aa12.85□□□□□ -0.35
TRIM28-214ENST00000600840 WAPLQ7Z5K2 1190 aa12.85□□□□□ -0.35
TRIM28-214ENST00000600840 STK26Q9P289 416 aa12.85□□□□□ -0.35
TRIM28-214ENST00000600840 ANKRD30BQ9BXX2 1392 aa12.84□□□□□ -0.35
TRIM28-214ENST00000600840 PLEKHH1Q9ULM0 1364 aa12.84□□□□□ -0.35
TRIM28-214ENST00000600840 SLIT2O94813 1529 aa12.83□□□□□ -0.36
TRIM28-214ENST00000600840 PIK3C2GO75747 1445 aa12.82□□□□□ -0.36
TRIM28-214ENST00000600840 SF3B2Q13435 895 aaKnown RBP12.81□□□□□ -0.36
TRIM28-214ENST00000600840 UNC5CLQ8IV45 518 aa12.81□□□□□ -0.36
TRIM28-214ENST00000600840 LRPPRCP42704 1394 aaKnown RBP12.81□□□□□ -0.36
TRIM28-214ENST00000600840 USP32Q8NFA0 1604 aa12.8□□□□□ -0.36
TRIM28-214ENST00000600840 TECPR2O15040 1411 aa12.8□□□□□ -0.36
TRIM28-214ENST00000600840 KNDC1Q76NI1 1749 aa12.8□□□□□ -0.36
TRIM28-214ENST00000600840 NUTM2FA1L443 756 aa12.8□□□□□ -0.36
TRIM28-214ENST00000600840 ESCO1Q5FWF5 840 aa12.8□□□□□ -0.36
TRIM28-214ENST00000600840 CFAP70Q5T0N1 1121 aa12.8□□□□□ -0.36
TRIM28-214ENST00000600840 SEPT12Q8IYM1 358 aa12.8□□□□□ -0.36
TRIM28-214ENST00000600840 NPHP3Q7Z494 1330 aa12.8□□□□□ -0.36
TRIM28-214ENST00000600840 ABCC11Q96J66 1382 aa12.8□□□□□ -0.36
TRIM28-214ENST00000600840 PLCH1Q4KWH8 1693 aa12.8□□□□□ -0.36
TRIM28-214ENST00000600840 CDC42BPGQ6DT37 1551 aa12.79□□□□□ -0.36
TRIM28-214ENST00000600840 FOXO3O43524 673 aa12.79□□□□□ -0.36
TRIM28-214ENST00000600840 YTHDC2Q9H6S0 1430 aaKnown RBP12.79□□□□□ -0.36
TRIM28-214ENST00000600840 NRXN1Q9ULB1 1477 aa12.78□□□□□ -0.36
TRIM28-214ENST00000600840 C14orf93Q9H972 538 aaKnown RBP12.78□□□□□ -0.36
TRIM28-214ENST00000600840 RGPD8O14715 1765 aaPredicted RBP12.78□□□□□ -0.36
TRIM28-214ENST00000600840 PLEKHG5O94827 1062 aa12.76□□□□□ -0.37
TRIM28-214ENST00000600840 FMN2Q9NZ56 1722 aa12.76□□□□□ -0.37
TRIM28-214ENST00000600840 KRT27Q7Z3Y8 459 aa12.75□□□□□ -0.37
TRIM28-214ENST00000600840 ABCA3Q99758 1704 aa12.75□□□□□ -0.37
TRIM28-214ENST00000600840 NWD2Q9ULI1 1742 aa12.74□□□□□ -0.37
TRIM28-214ENST00000600840 BAG6P46379 1132 aa12.74□□□□□ -0.37
TRIM28-214ENST00000600840 R3HDM1Q15032 1099 aaKnown RBP12.74□□□□□ -0.37
TRIM28-214ENST00000600840 SIN3AQ96ST3 1273 aa12.74□□□□□ -0.37
TRIM28-214ENST00000600840 CCDC9Q9Y3X0 531 aaKnown RBP12.74□□□□□ -0.37
TRIM28-214ENST00000600840 RGPD1P0DJD0 1748 aa12.74□□□□□ -0.37
TRIM28-214ENST00000600840 CLSPNQ9HAW4 1339 aa12.73□□□□□ -0.37
TRIM28-214ENST00000600840 EN1Q05925 392 aaPredicted RBP12.73□□□□□ -0.37
TRIM28-214ENST00000600840 SAFB2Q14151 953 aaKnown RBP eCLIP12.73□□□□□ -0.37
TRIM28-214ENST00000600840 VPS72Q15906 364 aa12.73□□□□□ -0.37
TRIM28-214ENST00000600840 CABLES1Q8TDN4 633 aa12.73□□□□□ -0.37
TRIM28-214ENST00000600840 KDM2AQ9Y2K7 1162 aa12.73□□□□□ -0.37
TRIM28-214ENST00000600840 SPATA31A3Q5VYP0 1347 aa12.72□□□□□ -0.37
TRIM28-214ENST00000600840 TNS1Q9HBL0 1735 aaKnown RBP12.72□□□□□ -0.37
TRIM28-214ENST00000600840 A0A0G2JS52 829 aa12.72□□□□□ -0.37
TRIM28-214ENST00000600840 MYT1Q01538 1121 aa12.72□□□□□ -0.37
TRIM28-214ENST00000600840 FAM182BQ5T319 152 aa12.72□□□□□ -0.37
TRIM28-214ENST00000600840 SIRT1Q96EB6 747 aa12.72□□□□□ -0.37
TRIM28-214ENST00000600840 PRAM1Q96QH2 718 aa12.72□□□□□ -0.37
TRIM28-214ENST00000600840 ADGRB1O14514 1584 aa12.72□□□□□ -0.37
TRIM28-214ENST00000600840 NRAPQ86VF7 1730 aa12.71□□□□□ -0.37
TRIM28-214ENST00000600840 YY1P25490 414 aa12.71□□□□□ -0.37
TRIM28-214ENST00000600840 KIF1AQ12756 1690 aa12.7□□□□□ -0.38
TRIM28-214ENST00000600840 ONECUT3O60422 494 aaPredicted RBP12.7□□□□□ -0.38
TRIM28-214ENST00000600840 HAP1P54257 671 aaPredicted RBP12.7□□□□□ -0.38
TRIM28-214ENST00000600840 DCAF11Q8TEB1 546 aa12.69□□□□□ -0.38
TRIM28-214ENST00000600840 FAM98CQ17RN3 349 aaKnown RBP12.68□□□□□ -0.38
TRIM28-214ENST00000600840 KRT28Q7Z3Y7 464 aa12.68□□□□□ -0.38
TRIM28-214ENST00000600840 TRAK1Q9UPV9 953 aa12.68□□□□□ -0.38
TRIM28-214ENST00000600840 DLC1Q96QB1 1528 aa12.67□□□□□ -0.38
TRIM28-214ENST00000600840 EZH2Q15910 746 aaKnown RBP12.67□□□□□ -0.38
TRIM28-214ENST00000600840 CCER1Q8TC90 406 aaPredicted RBP12.67□□□□□ -0.38
TRIM28-214ENST00000600840 HIRIP3Q9BW71 556 aaPredicted RBP12.67□□□□□ -0.38
TRIM28-214ENST00000600840 PHF8Q9UPP1 1060 aa12.67□□□□□ -0.38
TRIM28-214ENST00000600840 TNS3Q68CZ2 1445 aa12.67□□□□□ -0.38
TRIM28-214ENST00000600840 POGKQ9P215 609 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms