RNA–Protein interactions for RNA: ENST00000600718.5

SHKBP1-224, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 1,993 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-224ENST00000600718 RALBP1Q15311 655 aa24.11■■□□□ 1.45
SHKBP1-224ENST00000600718 WAPLQ7Z5K2 1190 aa24.11■■□□□ 1.45
SHKBP1-224ENST00000600718 YTHDC1Q96MU7 727 aaKnown RBP24.11■■□□□ 1.45
SHKBP1-224ENST00000600718 KNSTRNQ9Y448 316 aa24.09■■□□□ 1.45
SHKBP1-224ENST00000600718 CPS1P31327 1500 aa24.09■■□□□ 1.45
SHKBP1-224ENST00000600718 PLEKHH1Q9ULM0 1364 aa24.08■■□□□ 1.44
SHKBP1-224ENST00000600718 SRPK2P78362 688 aaKnown RBP24.07■■□□□ 1.44
SHKBP1-224ENST00000600718 CABP2Q9NPB3 220 aa24.07■■□□□ 1.44
SHKBP1-224ENST00000600718 CNGB1Q14028 1251 aaPredicted RBP24.06■■□□□ 1.44
SHKBP1-224ENST00000600718 TMC1Q8TDI8 760 aa24.06■■□□□ 1.44
SHKBP1-224ENST00000600718 CDK19Q9BWU1 502 aa24.05■■□□□ 1.44
SHKBP1-224ENST00000600718 SLC12A5Q9H2X9 1139 aa24.05■■□□□ 1.44
SHKBP1-224ENST00000600718 ATAD2Q6PL18 1390 aa24.05■■□□□ 1.44
SHKBP1-224ENST00000600718 PIK3R4Q99570 1358 aa24.05■■□□□ 1.44
SHKBP1-224ENST00000600718 NINLQ9Y2I6 1382 aa24.05■■□□□ 1.44
SHKBP1-224ENST00000600718 PTPRUQ92729 1446 aa24.05■■□□□ 1.44
SHKBP1-224ENST00000600718 PARD3Q8TEW0 1356 aa24.03■■□□□ 1.44
SHKBP1-224ENST00000600718 ROBO2Q9HCK4 1378 aa24.03■■□□□ 1.44
SHKBP1-224ENST00000600718 AMOTL2Q9Y2J4 779 aa24.03■■□□□ 1.44
SHKBP1-224ENST00000600718 NPC1L1Q9UHC9 1359 aa24.02■■□□□ 1.44
SHKBP1-224ENST00000600718 CENPBP07199 599 aaPredicted RBP24.02■■□□□ 1.44
SHKBP1-224ENST00000600718 MYBBP1AQ9BQG0 1328 aaKnown RBP24.02■■□□□ 1.44
SHKBP1-224ENST00000600718 AMER1Q5JTC6 1135 aaPredicted RBP24.02■■□□□ 1.43
SHKBP1-224ENST00000600718 CC2D1BQ5T0F9 858 aaKnown RBP24.01■■□□□ 1.43
SHKBP1-224ENST00000600718 CARD14Q9BXL6 1004 aa24.01■■□□□ 1.43
SHKBP1-224ENST00000600718 MRS2Q9HD23 443 aa24.01■■□□□ 1.43
SHKBP1-224ENST00000600718 KDM4FA0A1W2PPD8 638 aa24■■□□□ 1.43
SHKBP1-224ENST00000600718 CCDC184Q52MB2 194 aa24■■□□□ 1.43
SHKBP1-224ENST00000600718 WASLO00401 505 aaPredicted RBP23.99■■□□□ 1.43
SHKBP1-224ENST00000600718 PTCH1Q13635 1447 aa23.98■■□□□ 1.43
SHKBP1-224ENST00000600718 NPHP4O75161 1426 aaPredicted RBP23.97■■□□□ 1.43
SHKBP1-224ENST00000600718 ANKRD36BQ8N2N9 1353 aa23.97■■□□□ 1.43
SHKBP1-224ENST00000600718 BRD4O60885 1362 aaPredicted RBP23.94■■□□□ 1.42
SHKBP1-224ENST00000600718 NLRP13Q86W25 1043 aa23.94■■□□□ 1.42
SHKBP1-224ENST00000600718 TERF2IPQ9NYB0 399 aa23.93■■□□□ 1.42
SHKBP1-224ENST00000600718 XRN1Q8IZH2 1706 aaKnown RBP23.93■■□□□ 1.42
SHKBP1-224ENST00000600718 NCKAP5LQ9HCH0 1330 aa23.93■■□□□ 1.42
SHKBP1-224ENST00000600718 NSD3Q9BZ95 1437 aa23.92■■□□□ 1.42
SHKBP1-224ENST00000600718 ADGRB2O60241 1585 aa23.91■■□□□ 1.42
SHKBP1-224ENST00000600718 KCNA6P17658 529 aa23.91■■□□□ 1.42
SHKBP1-224ENST00000600718 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.9■■□□□ 1.42
SHKBP1-224ENST00000600718 CABP1Q9NZU7 370 aa23.9■■□□□ 1.42
SHKBP1-224ENST00000600718 HDGFL2Q7Z4V5 671 aaPredicted RBP23.89■■□□□ 1.41
SHKBP1-224ENST00000600718 NUDT16Q96DE0 195 aaKnown RBP23.89■■□□□ 1.41
SHKBP1-224ENST00000600718 CGNL1Q0VF96 1302 aa23.88■■□□□ 1.41
SHKBP1-224ENST00000600718 A0A1W2PP64 1363 aa23.87■■□□□ 1.41
SHKBP1-224ENST00000600718 CHD2O14647 1828 aaKnown RBP23.87■■□□□ 1.41
SHKBP1-224ENST00000600718 USP32Q8NFA0 1604 aa23.87■■□□□ 1.41
SHKBP1-224ENST00000600718 CCDC61Q9Y6R9 512 aa23.87■■□□□ 1.41
SHKBP1-224ENST00000600718 FAM9BQ8IZU0 186 aa23.86■■□□□ 1.41
SHKBP1-224ENST00000600718 CD163L1Q9NR16 1453 aa23.86■■□□□ 1.41
SHKBP1-224ENST00000600718 ATP7BP35670 1465 aa23.84■■□□□ 1.41
SHKBP1-224ENST00000600718 PPP2R1AP30153 589 aa23.84■■□□□ 1.41
SHKBP1-224ENST00000600718 PNISRQ8TF01 805 aaKnown RBP23.84■■□□□ 1.41
SHKBP1-224ENST00000600718 NSD2O96028 1365 aa23.84■■□□□ 1.41
SHKBP1-224ENST00000600718 PPIP5K1Q6PFW1 1433 aa23.83■■□□□ 1.4
SHKBP1-224ENST00000600718 PRR36Q9H6K5 1346 aa23.8■■□□□ 1.4
SHKBP1-224ENST00000600718 MORC1Q86VD1 984 aa23.8■■□□□ 1.4
SHKBP1-224ENST00000600718 MYT1Q01538 1121 aa23.8■■□□□ 1.4
SHKBP1-224ENST00000600718 CPSF1Q10570 1443 aaKnown RBP23.79■■□□□ 1.4
SHKBP1-224ENST00000600718 HSPA2P54652 639 aa23.78■■□□□ 1.4
SHKBP1-224ENST00000600718 ZNF692Q9BU19 519 aaPredicted RBP23.77■■□□□ 1.4
SHKBP1-224ENST00000600718 LMTK3Q96Q04 1460 aa23.77■■□□□ 1.4
SHKBP1-224ENST00000600718 PLEKHG3A1L390 1219 aa23.76■■□□□ 1.39
SHKBP1-224ENST00000600718 NWD1Q149M9 1564 aa23.75■■□□□ 1.39
SHKBP1-224ENST00000600718 CDC42BPGQ6DT37 1551 aa23.75■■□□□ 1.39
SHKBP1-224ENST00000600718 HNRNPUQ00839 825 aaKnown RBP eCLIP23.75■■□□□ 1.39
SHKBP1-224ENST00000600718 FYB1O15117 783 aa23.74■■□□□ 1.39
SHKBP1-224ENST00000600718 EDC4Q6P2E9 1401 aaKnown RBP23.73■■□□□ 1.39
SHKBP1-224ENST00000600718 ANKARQ7Z5J8 1434 aa23.72■■□□□ 1.39
SHKBP1-224ENST00000600718 TOPAZ1Q8N9V7 1692 aa23.72■■□□□ 1.39
SHKBP1-224ENST00000600718 NUTM2FA1L443 756 aa23.71■■□□□ 1.39
SHKBP1-224ENST00000600718 GTF3C3Q9Y5Q9 886 aa23.71■■□□□ 1.39
SHKBP1-224ENST00000600718 GGNBP2Q9H3C7 697 aa23.69■■□□□ 1.38
SHKBP1-224ENST00000600718 ADGRL3Q9HAR2 1447 aa23.69■■□□□ 1.38
SHKBP1-224ENST00000600718 ACEP12821 1306 aa23.69■■□□□ 1.38
SHKBP1-224ENST00000600718 PROSER2Q86WR7 435 aaPredicted RBP23.69■■□□□ 1.38
SHKBP1-224ENST00000600718 NKTRP30414 1462 aaKnown RBP23.68■■□□□ 1.38
SHKBP1-224ENST00000600718 INSRP06213 1382 aa23.68■■□□□ 1.38
SHKBP1-224ENST00000600718 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.67■■□□□ 1.38
SHKBP1-224ENST00000600718 AKAP12Q02952 1782 aa23.67■■□□□ 1.38
SHKBP1-224ENST00000600718 FMN2Q9NZ56 1722 aa23.67■■□□□ 1.38
SHKBP1-224ENST00000600718 ITSN1Q15811 1721 aa23.66■■□□□ 1.38
SHKBP1-224ENST00000600718 NALCNQ8IZF0 1738 aa23.66■■□□□ 1.38
SHKBP1-224ENST00000600718 TNNT2P45379 298 aaPredicted RBP23.66■■□□□ 1.38
SHKBP1-224ENST00000600718 MON2Q7Z3U7 1717 aa23.66■■□□□ 1.38
SHKBP1-224ENST00000600718 RBM33Q96EV2 1170 aaKnown RBP23.65■■□□□ 1.38
SHKBP1-224ENST00000600718 POLR3AO14802 1390 aaPredicted RBP23.65■■□□□ 1.38
SHKBP1-224ENST00000600718 ANKRD26Q9UPS8 1709 aa23.65■■□□□ 1.38
SHKBP1-224ENST00000600718 C14orf37Q86TY3 774 aa23.64■■□□□ 1.38
SHKBP1-224ENST00000600718 KIF20BQ96Q89 1820 aa23.64■■□□□ 1.37
SHKBP1-224ENST00000600718 WDR43Q15061 677 aaKnown RBP eCLIP23.63■■□□□ 1.37
SHKBP1-224ENST00000600718 ZBED9Q6R2W3 1325 aa23.62■■□□□ 1.37
SHKBP1-224ENST00000600718 STRCQ7RTU9 1775 aa23.62■■□□□ 1.37
SHKBP1-224ENST00000600718 MTHFSP49914 203 aa23.61■■□□□ 1.37
SHKBP1-224ENST00000600718 NGDNQ8NEJ9 315 aaKnown RBP23.61■■□□□ 1.37
SHKBP1-224ENST00000600718 PMFBP1Q8TBY8 1022 aa23.61■■□□□ 1.37
SHKBP1-224ENST00000600718 USP6P35125 1406 aa23.61■■□□□ 1.37
SHKBP1-224ENST00000600718 TTC21BQ7Z4L5 1316 aa23.61■■□□□ 1.37
SHKBP1-224ENST00000600718 CFAP53Q96M91 514 aa23.6■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms