RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 ANKRD30BQ9BXX2 1392 aa26.05■■□□□ 1.76
SHKBP1-223ENST00000600552 XPCQ01831 940 aaPredicted RBP26.03■■□□□ 1.76
SHKBP1-223ENST00000600552 QTRT2Q9H974 415 aaKnown RBP26.02■■□□□ 1.76
SHKBP1-223ENST00000600552 SOS2Q07890 1332 aaPredicted RBP26■■□□□ 1.75
SHKBP1-223ENST00000600552 LRPPRCP42704 1394 aaKnown RBP25.99■■□□□ 1.75
SHKBP1-223ENST00000600552 PLEKHH1Q9ULM0 1364 aa25.99■■□□□ 1.75
SHKBP1-223ENST00000600552 IFT172Q9UG01 1749 aa25.99■■□□□ 1.75
SHKBP1-223ENST00000600552 PRAG1Q86YV5 1406 aa25.98■■□□□ 1.75
SHKBP1-223ENST00000600552 FOXO3O43524 673 aa25.98■■□□□ 1.75
SHKBP1-223ENST00000600552 UPF1Q92900 1129 aaKnown RBP eCLIP25.96■■□□□ 1.75
SHKBP1-223ENST00000600552 RAB3GAP2Q9H2M9 1393 aa25.95■■□□□ 1.75
SHKBP1-223ENST00000600552 NPHP3Q7Z494 1330 aa25.95■■□□□ 1.75
SHKBP1-223ENST00000600552 CFAP70Q5T0N1 1121 aa25.95■■□□□ 1.74
SHKBP1-223ENST00000600552 SAFB2Q14151 953 aaKnown RBP eCLIP25.94■■□□□ 1.74
SHKBP1-223ENST00000600552 PIK3C2GO75747 1445 aa25.94■■□□□ 1.74
SHKBP1-223ENST00000600552 CDC42BPGQ6DT37 1551 aa25.94■■□□□ 1.74
SHKBP1-223ENST00000600552 ABCC11Q96J66 1382 aa25.94■■□□□ 1.74
SHKBP1-223ENST00000600552 ACIN1Q9UKV3 1341 aaKnown RBP25.93■■□□□ 1.74
SHKBP1-223ENST00000600552 RBM6P78332 1123 aaKnown RBP25.93■■□□□ 1.74
SHKBP1-223ENST00000600552 YTHDC2Q9H6S0 1430 aaKnown RBP25.93■■□□□ 1.74
SHKBP1-223ENST00000600552 C14orf93Q9H972 538 aaKnown RBP25.92■■□□□ 1.74
SHKBP1-223ENST00000600552 USP21Q9UK80 565 aa25.92■■□□□ 1.74
SHKBP1-223ENST00000600552 LAMC1P11047 1609 aa25.92■■□□□ 1.74
SHKBP1-223ENST00000600552 PLEKHG5O94827 1062 aa25.91■■□□□ 1.74
SHKBP1-223ENST00000600552 TECPR2O15040 1411 aa25.9■■□□□ 1.74
SHKBP1-223ENST00000600552 KDM2AQ9Y2K7 1162 aa25.89■■□□□ 1.74
SHKBP1-223ENST00000600552 DHX57Q6P158 1386 aaKnown RBP25.88■■□□□ 1.73
SHKBP1-223ENST00000600552 KNDC1Q76NI1 1749 aa25.86■■□□□ 1.73
SHKBP1-223ENST00000600552 POGKQ9P215 609 aa25.86■■□□□ 1.73
SHKBP1-223ENST00000600552 CDK12Q9NYV4 1490 aaPredicted RBP25.85■■□□□ 1.73
SHKBP1-223ENST00000600552 PRAM1Q96QH2 718 aa25.85■■□□□ 1.73
SHKBP1-223ENST00000600552 RGS12O14924 1447 aa25.85■■□□□ 1.73
SHKBP1-223ENST00000600552 PXDNQ92626 1479 aa25.85■■□□□ 1.73
SHKBP1-223ENST00000600552 TRPC5Q9UL62 973 aaPredicted RBP25.84■■□□□ 1.73
SHKBP1-223ENST00000600552 KRT28Q7Z3Y7 464 aa25.83■■□□□ 1.73
SHKBP1-223ENST00000600552 FMN2Q9NZ56 1722 aa25.82■■□□□ 1.72
SHKBP1-223ENST00000600552 LMOD2Q6P5Q4 547 aa25.81■■□□□ 1.72
SHKBP1-223ENST00000600552 DCAF11Q8TEB1 546 aa25.81■■□□□ 1.72
SHKBP1-223ENST00000600552 SIRT1Q96EB6 747 aa25.81■■□□□ 1.72
SHKBP1-223ENST00000600552 HAP1P54257 671 aaPredicted RBP25.8■■□□□ 1.72
SHKBP1-223ENST00000600552 FNBP4Q8N3X1 1017 aaPredicted RBP25.8■■□□□ 1.72
SHKBP1-223ENST00000600552 PHF8Q9UPP1 1060 aa25.8■■□□□ 1.72
SHKBP1-223ENST00000600552 TRAK1Q9UPV9 953 aa25.8■■□□□ 1.72
SHKBP1-223ENST00000600552 COL22A1Q8NFW1 1626 aaPredicted RBP25.8■■□□□ 1.72
SHKBP1-223ENST00000600552 RGPD8O14715 1765 aaPredicted RBP25.79■■□□□ 1.72
SHKBP1-223ENST00000600552 MYOM2P54296 1465 aa25.79■■□□□ 1.72
SHKBP1-223ENST00000600552 NRXN1Q9ULB1 1477 aa25.79■■□□□ 1.72
SHKBP1-223ENST00000600552 HIRIP3Q9BW71 556 aaPredicted RBP25.78■■□□□ 1.72
SHKBP1-223ENST00000600552 PSME1Q06323 249 aa25.76■■□□□ 1.71
SHKBP1-223ENST00000600552 PMFBP1Q8TBY8 1022 aa25.76■■□□□ 1.71
SHKBP1-223ENST00000600552 SPATA31A3Q5VYP0 1347 aa25.76■■□□□ 1.71
SHKBP1-223ENST00000600552 MINK1Q8N4C8 1332 aaPredicted RBP25.74■■□□□ 1.71
SHKBP1-223ENST00000600552 CABLES1Q8TDN4 633 aa25.74■■□□□ 1.71
SHKBP1-223ENST00000600552 KIF1AQ12756 1690 aa25.74■■□□□ 1.71
SHKBP1-223ENST00000600552 ATRNO75882 1429 aa25.72■■□□□ 1.71
SHKBP1-223ENST00000600552 MARF1Q9Y4F3 1742 aaKnown RBP25.71■■□□□ 1.71
SHKBP1-223ENST00000600552 BCL9LQ86UU0 1499 aa25.7■■□□□ 1.7
SHKBP1-223ENST00000600552 ATAD2Q6PL18 1390 aa25.69■■□□□ 1.7
SHKBP1-223ENST00000600552 GJD4Q96KN9 370 aaPredicted RBP25.68■■□□□ 1.7
SHKBP1-223ENST00000600552 TNS3Q68CZ2 1445 aa25.66■■□□□ 1.7
SHKBP1-223ENST00000600552 UNC5CLQ8IV45 518 aa25.66■■□□□ 1.7
SHKBP1-223ENST00000600552 DLC1Q96QB1 1528 aa25.65■■□□□ 1.7
SHKBP1-223ENST00000600552 CCDC9Q9Y3X0 531 aaKnown RBP25.65■■□□□ 1.7
SHKBP1-223ENST00000600552 ADGRB1O14514 1584 aa25.64■■□□□ 1.69
SHKBP1-223ENST00000600552 HRCP23327 699 aa25.62■■□□□ 1.69
SHKBP1-223ENST00000600552 SBNO1A3KN83 1393 aa25.61■■□□□ 1.69
SHKBP1-223ENST00000600552 USP32Q8NFA0 1604 aa25.6■■□□□ 1.69
SHKBP1-223ENST00000600552 WASLO00401 505 aaPredicted RBP25.6■■□□□ 1.69
SHKBP1-223ENST00000600552 NGDNQ8NEJ9 315 aaKnown RBP25.6■■□□□ 1.69
SHKBP1-223ENST00000600552 ANKARQ7Z5J8 1434 aa25.6■■□□□ 1.69
SHKBP1-223ENST00000600552 PRR36Q9H6K5 1346 aa25.6■■□□□ 1.69
SHKBP1-223ENST00000600552 PAK3O75914 559 aaPredicted RBP25.59■■□□□ 1.69
SHKBP1-223ENST00000600552 ARHGEF10O15013 1369 aa25.58■■□□□ 1.69
SHKBP1-223ENST00000600552 GPRASP1Q5JY77 1395 aa25.58■■□□□ 1.69
SHKBP1-223ENST00000600552 RALGAPBQ86X10 1494 aa25.58■■□□□ 1.69
SHKBP1-223ENST00000600552 SLIT2O94813 1529 aa25.58■■□□□ 1.68
SHKBP1-223ENST00000600552 STAC3Q96MF2 364 aa25.57■■□□□ 1.68
SHKBP1-223ENST00000600552 FAM83GA6ND36 823 aa25.55■■□□□ 1.68
SHKBP1-223ENST00000600552 ADGRB2O60241 1585 aa25.55■■□□□ 1.68
SHKBP1-223ENST00000600552 EIF3AQ14152 1382 aaKnown RBP25.55■■□□□ 1.68
SHKBP1-223ENST00000600552 A0A0G2JS52 829 aa25.54■■□□□ 1.68
SHKBP1-223ENST00000600552 MYT1Q01538 1121 aa25.54■■□□□ 1.68
SHKBP1-223ENST00000600552 TNKS1BP1Q9C0C2 1729 aaKnown RBP25.54■■□□□ 1.68
SHKBP1-223ENST00000600552 GLI3P10071 1580 aa25.52■■□□□ 1.68
SHKBP1-223ENST00000600552 VPS72Q15906 364 aa25.52■■□□□ 1.68
SHKBP1-223ENST00000600552 SEPT12Q8IYM1 358 aa25.52■■□□□ 1.68
SHKBP1-223ENST00000600552 NUDT16Q96DE0 195 aaKnown RBP25.52■■□□□ 1.68
SHKBP1-223ENST00000600552 TULP4Q9NRJ4 1543 aa25.52■■□□□ 1.68
SHKBP1-223ENST00000600552 PLCH1Q4KWH8 1693 aa25.5■■□□□ 1.67
SHKBP1-223ENST00000600552 CDK19Q9BWU1 502 aa25.5■■□□□ 1.67
SHKBP1-223ENST00000600552 ABCA3Q99758 1704 aa25.49■■□□□ 1.67
SHKBP1-223ENST00000600552 BTG4Q9NY30 223 aa25.49■■□□□ 1.67
SHKBP1-223ENST00000600552 ARHGEF28Q8N1W1 1705 aaKnown RBP25.49■■□□□ 1.67
SHKBP1-223ENST00000600552 NBPF1Q3BBV0 1214 aa25.48■■□□□ 1.67
SHKBP1-223ENST00000600552 TRPM3Q9HCF6 1732 aaPredicted RBP25.47■■□□□ 1.67
SHKBP1-223ENST00000600552 NUTM2GQ5VZR2 741 aa25.47■■□□□ 1.67
SHKBP1-223ENST00000600552 BRWD3Q6RI45 1802 aa25.47■■□□□ 1.67
SHKBP1-223ENST00000600552 CCDC125Q86Z20 511 aa25.46■■□□□ 1.67
SHKBP1-223ENST00000600552 ZRANB1Q9UGI0 708 aa25.46■■□□□ 1.67
SHKBP1-223ENST00000600552 NWD2Q9ULI1 1742 aa25.44■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms