RNA–Protein interactions for RNA: ENST00000600031.1

VRK3-218, Transcript of vaccinia related kinase 3, humanhuman

Gene VRK3, Length 2,110 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-218ENST00000600031 PTPRUQ92729 1446 aa20.78■□□□□ 0.92
VRK3-218ENST00000600031 CCER2I3L3R5 266 aa20.77■□□□□ 0.92
VRK3-218ENST00000600031 DIP2AQ14689 1571 aa20.77■□□□□ 0.92
VRK3-218ENST00000600031 CNGB1Q14028 1251 aaPredicted RBP20.77■□□□□ 0.91
VRK3-218ENST00000600031 SIRT1Q96EB6 747 aa20.77■□□□□ 0.91
VRK3-218ENST00000600031 CPS1P31327 1500 aa20.76■□□□□ 0.91
VRK3-218ENST00000600031 FAM135BQ49AJ0 1406 aa20.75■□□□□ 0.91
VRK3-218ENST00000600031 PUS7Q96PZ0 661 aaKnown RBP20.75■□□□□ 0.91
VRK3-218ENST00000600031 CABP2Q9NPB3 220 aa20.75■□□□□ 0.91
VRK3-218ENST00000600031 ROBO2Q9HCK4 1378 aa20.75■□□□□ 0.91
VRK3-218ENST00000600031 AMOTL2Q9Y2J4 779 aa20.73■□□□□ 0.91
VRK3-218ENST00000600031 SRPK2P78362 688 aaKnown RBP20.71■□□□□ 0.91
VRK3-218ENST00000600031 SLC12A5Q9H2X9 1139 aa20.71■□□□□ 0.91
VRK3-218ENST00000600031 NCKAP5LQ9HCH0 1330 aa20.71■□□□□ 0.91
VRK3-218ENST00000600031 TMC1Q8TDI8 760 aa20.71■□□□□ 0.91
VRK3-218ENST00000600031 CDK19Q9BWU1 502 aa20.71■□□□□ 0.91
VRK3-218ENST00000600031 SUPT16HQ9Y5B9 1047 aaKnown RBP20.69■□□□□ 0.9
VRK3-218ENST00000600031 NPHP4O75161 1426 aaPredicted RBP20.69■□□□□ 0.9
VRK3-218ENST00000600031 PIK3R4Q99570 1358 aa20.68■□□□□ 0.9
VRK3-218ENST00000600031 CARD14Q9BXL6 1004 aa20.68■□□□□ 0.9
VRK3-218ENST00000600031 KNSTRNQ9Y448 316 aa20.67■□□□□ 0.9
VRK3-218ENST00000600031 XRN1Q8IZH2 1706 aaKnown RBP20.67■□□□□ 0.9
VRK3-218ENST00000600031 CCDC184Q52MB2 194 aa20.66■□□□□ 0.9
VRK3-218ENST00000600031 MYT1Q01538 1121 aa20.66■□□□□ 0.9
VRK3-218ENST00000600031 PTCH1Q13635 1447 aa20.66■□□□□ 0.9
VRK3-218ENST00000600031 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.65■□□□□ 0.9
VRK3-218ENST00000600031 ATAD2Q6PL18 1390 aa20.65■□□□□ 0.9
VRK3-218ENST00000600031 KTN1Q86UP2 1357 aaKnown RBP20.65■□□□□ 0.9
VRK3-218ENST00000600031 WASLO00401 505 aaPredicted RBP20.65■□□□□ 0.9
VRK3-218ENST00000600031 CC2D1BQ5T0F9 858 aaKnown RBP20.65■□□□□ 0.9
VRK3-218ENST00000600031 KCNA6P17658 529 aa20.65■□□□□ 0.9
VRK3-218ENST00000600031 AMER1Q5JTC6 1135 aaPredicted RBP20.65■□□□□ 0.9
VRK3-218ENST00000600031 RALBP1Q15311 655 aa20.64■□□□□ 0.89
VRK3-218ENST00000600031 HSPA2P54652 639 aa20.63■□□□□ 0.89
VRK3-218ENST00000600031 CHD2O14647 1828 aaKnown RBP20.63■□□□□ 0.89
VRK3-218ENST00000600031 PARD3Q8TEW0 1356 aa20.63■□□□□ 0.89
VRK3-218ENST00000600031 NINLQ9Y2I6 1382 aa20.61■□□□□ 0.89
VRK3-218ENST00000600031 ANKRD36BQ8N2N9 1353 aa20.61■□□□□ 0.89
VRK3-218ENST00000600031 LMTK3Q96Q04 1460 aa20.6■□□□□ 0.89
VRK3-218ENST00000600031 ADGRB2O60241 1585 aa20.6■□□□□ 0.89
VRK3-218ENST00000600031 NSD3Q9BZ95 1437 aa20.59■□□□□ 0.89
VRK3-218ENST00000600031 MYBBP1AQ9BQG0 1328 aaKnown RBP20.59■□□□□ 0.89
VRK3-218ENST00000600031 MRS2Q9HD23 443 aa20.59■□□□□ 0.89
VRK3-218ENST00000600031 CABP1Q9NZU7 370 aa20.59■□□□□ 0.89
VRK3-218ENST00000600031 NPC1L1Q9UHC9 1359 aa20.58■□□□□ 0.89
VRK3-218ENST00000600031 CD163L1Q9NR16 1453 aa20.57■□□□□ 0.88
VRK3-218ENST00000600031 A0A1W2PP64 1363 aa20.57■□□□□ 0.88
VRK3-218ENST00000600031 NUDT16Q96DE0 195 aaKnown RBP20.57■□□□□ 0.88
VRK3-218ENST00000600031 PRR36Q9H6K5 1346 aa20.55■□□□□ 0.88
VRK3-218ENST00000600031 TERF2IPQ9NYB0 399 aa20.54■□□□□ 0.88
VRK3-218ENST00000600031 ATP7BP35670 1465 aa20.53■□□□□ 0.88
VRK3-218ENST00000600031 PPIP5K1Q6PFW1 1433 aa20.53■□□□□ 0.88
VRK3-218ENST00000600031 CCDC61Q9Y6R9 512 aa20.53■□□□□ 0.88
VRK3-218ENST00000600031 RBM33Q96EV2 1170 aaKnown RBP20.52■□□□□ 0.88
VRK3-218ENST00000600031 NUTM2FA1L443 756 aa20.51■□□□□ 0.87
VRK3-218ENST00000600031 NLRP13Q86W25 1043 aa20.51■□□□□ 0.87
VRK3-218ENST00000600031 USP32Q8NFA0 1604 aa20.51■□□□□ 0.87
VRK3-218ENST00000600031 HDGFL2Q7Z4V5 671 aaPredicted RBP20.51■□□□□ 0.87
VRK3-218ENST00000600031 BRD4O60885 1362 aaPredicted RBP20.51■□□□□ 0.87
VRK3-218ENST00000600031 NWD1Q149M9 1564 aa20.51■□□□□ 0.87
VRK3-218ENST00000600031 CGNL1Q0VF96 1302 aa20.5■□□□□ 0.87
VRK3-218ENST00000600031 STRCQ7RTU9 1775 aa20.49■□□□□ 0.87
VRK3-218ENST00000600031 PPP2R1AP30153 589 aa20.48■□□□□ 0.87
VRK3-218ENST00000600031 FAM9BQ8IZU0 186 aa20.48■□□□□ 0.87
VRK3-218ENST00000600031 CPSF1Q10570 1443 aaKnown RBP20.48■□□□□ 0.87
VRK3-218ENST00000600031 NALCNQ8IZF0 1738 aa20.47■□□□□ 0.87
VRK3-218ENST00000600031 TOPAZ1Q8N9V7 1692 aa20.46■□□□□ 0.87
VRK3-218ENST00000600031 CDC42BPGQ6DT37 1551 aa20.45■□□□□ 0.86
VRK3-218ENST00000600031 PNISRQ8TF01 805 aaKnown RBP20.45■□□□□ 0.86
VRK3-218ENST00000600031 MORC1Q86VD1 984 aa20.44■□□□□ 0.86
VRK3-218ENST00000600031 PLEKHG3A1L390 1219 aa20.44■□□□□ 0.86
VRK3-218ENST00000600031 NSD2O96028 1365 aa20.44■□□□□ 0.86
VRK3-218ENST00000600031 RGPD8O14715 1765 aaPredicted RBP20.43■□□□□ 0.86
VRK3-218ENST00000600031 ADGRL3Q9HAR2 1447 aa20.43■□□□□ 0.86
VRK3-218ENST00000600031 FYB1O15117 783 aa20.43■□□□□ 0.86
VRK3-218ENST00000600031 PROSER2Q86WR7 435 aaPredicted RBP20.43■□□□□ 0.86
VRK3-218ENST00000600031 FMN2Q9NZ56 1722 aa20.43■□□□□ 0.86
VRK3-218ENST00000600031 STRCP1A6NGW2 1772 aa20.42■□□□□ 0.86
VRK3-218ENST00000600031 NKTRP30414 1462 aaKnown RBP20.42■□□□□ 0.86
VRK3-218ENST00000600031 AKAP12Q02952 1782 aa20.42■□□□□ 0.86
VRK3-218ENST00000600031 GGNBP2Q9H3C7 697 aa20.41■□□□□ 0.86
VRK3-218ENST00000600031 ACEP12821 1306 aa20.41■□□□□ 0.86
VRK3-218ENST00000600031 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.41■□□□□ 0.86
VRK3-218ENST00000600031 ANKARQ7Z5J8 1434 aa20.41■□□□□ 0.86
VRK3-218ENST00000600031 ITSN1Q15811 1721 aa20.4■□□□□ 0.86
VRK3-218ENST00000600031 TNNT2P45379 298 aaPredicted RBP20.4■□□□□ 0.86
VRK3-218ENST00000600031 EDC4Q6P2E9 1401 aaKnown RBP20.4■□□□□ 0.86
VRK3-218ENST00000600031 MON2Q7Z3U7 1717 aa20.4■□□□□ 0.86
VRK3-218ENST00000600031 C14orf37Q86TY3 774 aa20.4■□□□□ 0.86
VRK3-218ENST00000600031 ZNF692Q9BU19 519 aaPredicted RBP20.39■□□□□ 0.86
VRK3-218ENST00000600031 PMFBP1Q8TBY8 1022 aa20.39■□□□□ 0.85
VRK3-218ENST00000600031 KIF20BQ96Q89 1820 aa20.38■□□□□ 0.85
VRK3-218ENST00000600031 ANKRD26Q9UPS8 1709 aa20.36■□□□□ 0.85
VRK3-218ENST00000600031 HNRNPUQ00839 825 aaKnown RBP eCLIP20.36■□□□□ 0.85
VRK3-218ENST00000600031 POLR3AO14802 1390 aaPredicted RBP20.35■□□□□ 0.85
VRK3-218ENST00000600031 TMEM94Q12767 1356 aa20.35■□□□□ 0.85
VRK3-218ENST00000600031 NME9Q86XW9 330 aa20.35■□□□□ 0.85
VRK3-218ENST00000600031 USP6P35125 1406 aa20.34■□□□□ 0.85
VRK3-218ENST00000600031 NEFLP07196 543 aa20.33■□□□□ 0.85
VRK3-218ENST00000600031 FKBP8Q14318 412 aa20.33■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms