RNA–Protein interactions for RNA: ENST00000593223.1

SMAD4-216, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 568 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-216ENST00000593223 ZPR1O75312 459 aa10.41□□□□□ -0.74
SMAD4-216ENST00000593223 FMNL1O95466 1100 aaPredicted RBP10.41□□□□□ -0.74
SMAD4-216ENST00000593223 NUTM2DQ5VT03 806 aaPredicted RBP10.41□□□□□ -0.74
SMAD4-216ENST00000593223 NUTM2AQ8IVF1 878 aaPredicted RBP10.41□□□□□ -0.74
SMAD4-216ENST00000593223 PCDHGC3Q9UN70 934 aa10.41□□□□□ -0.74
SMAD4-216ENST00000593223 KCNC4Q03721 635 aa10.4□□□□□ -0.74
SMAD4-216ENST00000593223 ZNF516Q92618 1163 aa10.4□□□□□ -0.74
SMAD4-216ENST00000593223 MTMR2Q13614 643 aa10.39□□□□□ -0.75
SMAD4-216ENST00000593223 ZBTB3Q9H5J0 574 aa10.39□□□□□ -0.75
SMAD4-216ENST00000593223 TUSC1Q2TAM9 212 aa10.38□□□□□ -0.75
SMAD4-216ENST00000593223 RNF19BQ6ZMZ0 732 aa10.38□□□□□ -0.75
SMAD4-216ENST00000593223 CABLES1Q8TDN4 633 aa10.38□□□□□ -0.75
SMAD4-216ENST00000593223 SYMPKQ92797 1274 aaKnown RBP10.38□□□□□ -0.75
SMAD4-216ENST00000593223 SPSB2Q99619 263 aa10.38□□□□□ -0.75
SMAD4-216ENST00000593223 TLL1O43897 1013 aa10.37□□□□□ -0.75
SMAD4-216ENST00000593223 PRPF38BQ5VTL8 546 aaKnown RBP10.37□□□□□ -0.75
SMAD4-216ENST00000593223 BRICD5Q6PL45 260 aa10.37□□□□□ -0.75
SMAD4-216ENST00000593223 SALL2Q9Y467 1007 aaPredicted RBP10.37□□□□□ -0.75
SMAD4-216ENST00000593223 HRCP23327 699 aa10.36□□□□□ -0.75
SMAD4-216ENST00000593223 QPCTQ16769 361 aa10.36□□□□□ -0.75
SMAD4-216ENST00000593223 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.36□□□□□ -0.75
SMAD4-216ENST00000593223 SPDYE5A6NIY4 337 aa10.35□□□□□ -0.75
SMAD4-216ENST00000593223 LILRB3O75022 631 aa10.35□□□□□ -0.75
SMAD4-216ENST00000593223 ITGBL1O95965 494 aaPredicted RBP10.35□□□□□ -0.75
SMAD4-216ENST00000593223 TSC1Q92574 1164 aa10.35□□□□□ -0.75
SMAD4-216ENST00000593223 USB1Q9BQ65 265 aaKnown RBP10.35□□□□□ -0.75
SMAD4-216ENST00000593223 ADH1BP00325 375 aa10.34□□□□□ -0.75
SMAD4-216ENST00000593223 RETREG3Q86VR2 466 aa10.34□□□□□ -0.75
SMAD4-216ENST00000593223 THAP11Q96EK4 314 aa10.34□□□□□ -0.75
SMAD4-216ENST00000593223 NKX2-3Q8TAU0 364 aa10.33□□□□□ -0.76
SMAD4-216ENST00000593223 RTL5Q5HYW3 569 aaPredicted RBP10.32□□□□□ -0.76
SMAD4-216ENST00000593223 PRR7Q8TB68 274 aa10.32□□□□□ -0.76
SMAD4-216ENST00000593223 SLC6A16Q9GZN6 736 aa10.31□□□□□ -0.76
SMAD4-216ENST00000593223 RFC5P40937 340 aa10.29□□□□□ -0.76
SMAD4-216ENST00000593223 PPP2R2DQ66LE6 453 aa10.29□□□□□ -0.76
SMAD4-216ENST00000593223 FAM160A2Q8N612 972 aaPredicted RBP10.29□□□□□ -0.76
SMAD4-216ENST00000593223 CFAP99D6REC4 459 aa10.28□□□□□ -0.76
SMAD4-216ENST00000593223 MSS51Q4VC12 460 aa10.28□□□□□ -0.76
SMAD4-216ENST00000593223 HELBQ8NG08 1087 aaPredicted RBP10.28□□□□□ -0.76
SMAD4-216ENST00000593223 AP1G2O75843 785 aa10.27□□□□□ -0.77
SMAD4-216ENST00000593223 S1PR4O95977 384 aa10.27□□□□□ -0.77
SMAD4-216ENST00000593223 GGCXP38435 758 aa10.27□□□□□ -0.77
SMAD4-216ENST00000593223 FBXO31Q5XUX0 539 aaPredicted RBP10.27□□□□□ -0.77
SMAD4-216ENST00000593223 PRDM9Q9NQV7 894 aa10.27□□□□□ -0.77
SMAD4-216ENST00000593223 JUNDP17535 347 aa10.25□□□□□ -0.77
SMAD4-216ENST00000593223 TMEM259Q4ZIN3 620 aa10.25□□□□□ -0.77
SMAD4-216ENST00000593223 IFFO2Q5TF58 517 aa10.23□□□□□ -0.77
SMAD4-216ENST00000593223 DESI1Q6ICB0 168 aa10.23□□□□□ -0.77
SMAD4-216ENST00000593223 DXOO77932 396 aaKnown RBP10.22□□□□□ -0.77
SMAD4-216ENST00000593223 MMP16P51512 607 aa10.22□□□□□ -0.77
SMAD4-216ENST00000593223 CTDSPL2Q05D32 466 aa10.22□□□□□ -0.77
SMAD4-216ENST00000593223 PPP1R18Q6NYC8 613 aa10.22□□□□□ -0.77
SMAD4-216ENST00000593223 CCDC24Q8N4L8 307 aa10.22□□□□□ -0.77
SMAD4-216ENST00000593223 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.21□□□□□ -0.77
SMAD4-216ENST00000593223 PPEF1O14829 653 aaPredicted RBP10.2□□□□□ -0.78
SMAD4-216ENST00000593223 GTF3C3Q9Y5Q9 886 aa10.2□□□□□ -0.78
SMAD4-216ENST00000593223 RNF223E7ERA6 249 aa10.19□□□□□ -0.78
SMAD4-216ENST00000593223 PER1O15534 1290 aaPredicted RBP10.19□□□□□ -0.78
SMAD4-216ENST00000593223 USP17L8P0C7I0 530 aa10.19□□□□□ -0.78
SMAD4-216ENST00000593223 PTPRNQ16849 979 aa10.19□□□□□ -0.78
SMAD4-216ENST00000593223 LYPD8Q6UX82 237 aa10.19□□□□□ -0.78
SMAD4-216ENST00000593223 NUDT12Q9BQG2 462 aa10.19□□□□□ -0.78
SMAD4-216ENST00000593223 FCF1Q9Y324 198 aaKnown RBP10.19□□□□□ -0.78
SMAD4-216ENST00000593223 CTHP32929 405 aa10.18□□□□□ -0.78
SMAD4-216ENST00000593223 BANK1Q8NDB2 785 aa10.18□□□□□ -0.78
SMAD4-216ENST00000593223 CCNYL3P0C7X3 344 aa10.17□□□□□ -0.78
SMAD4-216ENST00000593223 LRRN4Q8WUT4 740 aa10.17□□□□□ -0.78
SMAD4-216ENST00000593223 A0A0G2JS52 829 aa10.16□□□□□ -0.78
SMAD4-216ENST00000593223 ANKLE1Q8NAG6 615 aa10.16□□□□□ -0.78
SMAD4-216ENST00000593223 IRX2Q9BZI1 471 aaPredicted RBP10.16□□□□□ -0.78
SMAD4-216ENST00000593223 RGS20O76081 388 aa10.15□□□□□ -0.78
SMAD4-216ENST00000593223 SNRKQ9NRH2 765 aa10.14□□□□□ -0.79
SMAD4-216ENST00000593223 ZBTB24O43167 697 aaPredicted RBP10.13□□□□□ -0.79
SMAD4-216ENST00000593223 FLIIQ13045 1269 aa10.13□□□□□ -0.79
SMAD4-216ENST00000593223 EVA1BQ9NVM1 165 aa10.13□□□□□ -0.79
SMAD4-216ENST00000593223 APBB1O00213 710 aa10.12□□□□□ -0.79
SMAD4-216ENST00000593223 KCNH2Q12809 1159 aa10.12□□□□□ -0.79
SMAD4-216ENST00000593223 MAP10Q9P2G4 905 aa10.12□□□□□ -0.79
SMAD4-216ENST00000593223 HMX1Q9NP08 348 aaPredicted RBP10.11□□□□□ -0.79
SMAD4-216ENST00000593223 NR6A1Q15406 480 aa10.1□□□□□ -0.79
SMAD4-216ENST00000593223 F12P00748 615 aaPredicted RBP10.09□□□□□ -0.79
SMAD4-216ENST00000593223 MCM6Q14566 821 aa10.09□□□□□ -0.79
SMAD4-216ENST00000593223 MTMR14Q8NCE2 650 aa10.09□□□□□ -0.79
SMAD4-216ENST00000593223 PRM3Q9NNZ6 103 aa10.09□□□□□ -0.79
SMAD4-216ENST00000593223 PLA2G2CQ5R387 149 aa10.08□□□□□ -0.8
SMAD4-216ENST00000593223 PTCRAQ6ISU1 281 aaPredicted RBP10.08□□□□□ -0.8
SMAD4-216ENST00000593223 PNMA1Q8ND90 353 aa10.08□□□□□ -0.8
SMAD4-216ENST00000593223 UNC93B1Q9H1C4 597 aa10.08□□□□□ -0.8
SMAD4-216ENST00000593223 UBTFP17480 764 aaKnown RBP10.06□□□□□ -0.8
SMAD4-216ENST00000593223 SLC19A1P41440 591 aa10.06□□□□□ -0.8
SMAD4-216ENST00000593223 EPS8L1Q8TE68 723 aa10.06□□□□□ -0.8
SMAD4-216ENST00000593223 ARMC2Q8NEN0 867 aa10.05□□□□□ -0.8
SMAD4-216ENST00000593223 SOCS7O14512 581 aa10.04□□□□□ -0.8
SMAD4-216ENST00000593223 CD2BP2O95400 341 aaKnown RBP10.04□□□□□ -0.8
SMAD4-216ENST00000593223 RPIAP49247 311 aa10.04□□□□□ -0.8
SMAD4-216ENST00000593223 LIAT1Q6ZQX7 453 aa10.04□□□□□ -0.8
SMAD4-216ENST00000593223 GJD4Q96KN9 370 aaPredicted RBP10.04□□□□□ -0.8
SMAD4-216ENST00000593223 TRIM34Q9BYJ4 488 aa10.04□□□□□ -0.8
SMAD4-216ENST00000593223 PRKD2Q9BZL6 878 aa10.04□□□□□ -0.8
SMAD4-216ENST00000593223 NDUFB9Q9Y6M9 179 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms