RNA–Protein interactions for RNA: ENST00000593026.1

DDX39A-221, Transcript of DExD-box helicase 39A, humanhuman

TSL 3

Gene DDX39A, Length 657 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-221ENST00000593026 PRAM1Q96QH2 718 aa21.3■■□□□ 1
DDX39A-221ENST00000593026 DCCP43146 1447 aa21.29■■□□□ 1
DDX39A-221ENST00000593026 POGKQ9P215 609 aa21.29■■□□□ 1
DDX39A-221ENST00000593026 ATF3P18847 181 aa21.28■■□□□ 1
DDX39A-221ENST00000593026 GPRASP1Q5JY77 1395 aa21.27■■□□□ 1
DDX39A-221ENST00000593026 CADPS2Q86UW7 1296 aa21.27■■□□□ 1
DDX39A-221ENST00000593026 SAFB2Q14151 953 aaKnown RBP eCLIP21.26■□□□□ 0.99
DDX39A-221ENST00000593026 CDC42BPGQ6DT37 1551 aa21.24■□□□□ 0.99
DDX39A-221ENST00000593026 PIP4K2BP78356 416 aa21.24■□□□□ 0.99
DDX39A-221ENST00000593026 CARD11Q9BXL7 1154 aa21.24■□□□□ 0.99
DDX39A-221ENST00000593026 SCAF1Q9H7N4 1312 aaKnown RBP21.24■□□□□ 0.99
DDX39A-221ENST00000593026 SLAIN2Q9P270 581 aa21.22■□□□□ 0.99
DDX39A-221ENST00000593026 EIF3AQ14152 1382 aaKnown RBP21.21■□□□□ 0.99
DDX39A-221ENST00000593026 ADGRB2O60241 1585 aa21.2■□□□□ 0.98
DDX39A-221ENST00000593026 MINK1Q8N4C8 1332 aaPredicted RBP21.2■□□□□ 0.98
DDX39A-221ENST00000593026 MST1RQ04912 1400 aa21.2■□□□□ 0.98
DDX39A-221ENST00000593026 CENPJQ9HC77 1338 aaPredicted RBP21.19■□□□□ 0.98
DDX39A-221ENST00000593026 HIRIP3Q9BW71 556 aaPredicted RBP21.17■□□□□ 0.98
DDX39A-221ENST00000593026 QRICH2Q9H0J4 1663 aa21.17■□□□□ 0.98
DDX39A-221ENST00000593026 FMN2Q9NZ56 1722 aa21.16■□□□□ 0.98
DDX39A-221ENST00000593026 ROBO1Q9Y6N7 1651 aa21.16■□□□□ 0.98
DDX39A-221ENST00000593026 C1orf167Q5SNV9 1468 aa21.15■□□□□ 0.98
DDX39A-221ENST00000593026 NUTM2FA1L443 756 aa21.12■□□□□ 0.97
DDX39A-221ENST00000593026 WASLO00401 505 aaPredicted RBP21.11■□□□□ 0.97
DDX39A-221ENST00000593026 BRINP3Q76B58 766 aa21.1■□□□□ 0.97
DDX39A-221ENST00000593026 USP47Q96K76 1375 aa21.1■□□□□ 0.97
DDX39A-221ENST00000593026 TULP4Q9NRJ4 1543 aa21.09■□□□□ 0.97
DDX39A-221ENST00000593026 HSPA1LP34931 641 aa21.09■□□□□ 0.97
DDX39A-221ENST00000593026 ANKARQ7Z5J8 1434 aa21.08■□□□□ 0.97
DDX39A-221ENST00000593026 SBNO2Q9Y2G9 1366 aa21.08■□□□□ 0.96
DDX39A-221ENST00000593026 ORAI2Q96SN7 254 aa21.07■□□□□ 0.96
DDX39A-221ENST00000593026 USP32Q8NFA0 1604 aa21.07■□□□□ 0.96
DDX39A-221ENST00000593026 ESCO1Q5FWF5 840 aa21.06■□□□□ 0.96
DDX39A-221ENST00000593026 CDK19Q9BWU1 502 aa21.06■□□□□ 0.96
DDX39A-221ENST00000593026 RGPD8O14715 1765 aaPredicted RBP21.05■□□□□ 0.96
DDX39A-221ENST00000593026 ST20-MTHFSA0A0A6YYL1 179 aa21.05■□□□□ 0.96
DDX39A-221ENST00000593026 EVC2Q86UK5 1308 aa21.04■□□□□ 0.96
DDX39A-221ENST00000593026 PHLPP1O60346 1717 aa21.04■□□□□ 0.96
DDX39A-221ENST00000593026 AHDC1Q5TGY3 1603 aaPredicted RBP21.04■□□□□ 0.96
DDX39A-221ENST00000593026 KIF1AQ12756 1690 aa21.03■□□□□ 0.96
DDX39A-221ENST00000593026 ATP7BP35670 1465 aa21.03■□□□□ 0.96
DDX39A-221ENST00000593026 DISP3Q9P2K9 1392 aa21.03■□□□□ 0.96
DDX39A-221ENST00000593026 SRPK2P78362 688 aaKnown RBP21.03■□□□□ 0.96
DDX39A-221ENST00000593026 PRR36Q9H6K5 1346 aa21.03■□□□□ 0.96
DDX39A-221ENST00000593026 NHSL1Q5SYE7 1610 aa21.02■□□□□ 0.96
DDX39A-221ENST00000593026 ITSN1Q15811 1721 aa21.01■□□□□ 0.95
DDX39A-221ENST00000593026 NUDT16Q96DE0 195 aaKnown RBP21.01■□□□□ 0.95
DDX39A-221ENST00000593026 CABP2Q9NPB3 220 aa21■□□□□ 0.95
DDX39A-221ENST00000593026 PHF8Q9UPP1 1060 aa21■□□□□ 0.95
DDX39A-221ENST00000593026 SLC24A1O60721 1099 aa20.99■□□□□ 0.95
DDX39A-221ENST00000593026 DDX17Q92841 729 aaKnown RBP20.99■□□□□ 0.95
DDX39A-221ENST00000593026 TESK2Q96S53 571 aa20.99■□□□□ 0.95
DDX39A-221ENST00000593026 TOPAZ1Q8N9V7 1692 aa20.99■□□□□ 0.95
DDX39A-221ENST00000593026 COL16A1Q07092 1604 aaPredicted RBP20.98■□□□□ 0.95
DDX39A-221ENST00000593026 EIF4G2P78344 907 aaKnown RBP eCLIP20.98■□□□□ 0.95
DDX39A-221ENST00000593026 NPHP3Q7Z494 1330 aa20.98■□□□□ 0.95
DDX39A-221ENST00000593026 FOXO3O43524 673 aa20.97■□□□□ 0.95
DDX39A-221ENST00000593026 CCDC61Q9Y6R9 512 aa20.97■□□□□ 0.95
DDX39A-221ENST00000593026 PMFBP1Q8TBY8 1022 aa20.96■□□□□ 0.95
DDX39A-221ENST00000593026 HSPA5P11021 654 aaKnown RBP20.94■□□□□ 0.94
DDX39A-221ENST00000593026 ATAD2Q6PL18 1390 aa20.94■□□□□ 0.94
DDX39A-221ENST00000593026 PPIP5K1Q6PFW1 1433 aa20.94■□□□□ 0.94
DDX39A-221ENST00000593026 PXDNQ92626 1479 aa20.93■□□□□ 0.94
DDX39A-221ENST00000593026 TMF1P82094 1093 aa20.92■□□□□ 0.94
DDX39A-221ENST00000593026 XPCQ01831 940 aaPredicted RBP20.92■□□□□ 0.94
DDX39A-221ENST00000593026 NGDNQ8NEJ9 315 aaKnown RBP20.92■□□□□ 0.94
DDX39A-221ENST00000593026 SOS2Q07890 1332 aaPredicted RBP20.92■□□□□ 0.94
DDX39A-221ENST00000593026 PLEKHG3A1L390 1219 aa20.9■□□□□ 0.94
DDX39A-221ENST00000593026 PSME1Q06323 249 aa20.9■□□□□ 0.94
DDX39A-221ENST00000593026 LRRC59Q96AG4 307 aaKnown RBP20.9■□□□□ 0.94
DDX39A-221ENST00000593026 PUS7Q96PZ0 661 aaKnown RBP20.9■□□□□ 0.94
DDX39A-221ENST00000593026 JCADQ9P266 1359 aa20.89■□□□□ 0.93
DDX39A-221ENST00000593026 KRT28Q7Z3Y7 464 aa20.89■□□□□ 0.93
DDX39A-221ENST00000593026 POLR3AO14802 1390 aaPredicted RBP20.88■□□□□ 0.93
DDX39A-221ENST00000593026 CABP1Q9NZU7 370 aa20.88■□□□□ 0.93
DDX39A-221ENST00000593026 ACEP12821 1306 aa20.87■□□□□ 0.93
DDX39A-221ENST00000593026 ZEB1P37275 1124 aaPredicted RBP20.87■□□□□ 0.93
DDX39A-221ENST00000593026 CDCA8Q53HL2 280 aa20.87■□□□□ 0.93
DDX39A-221ENST00000593026 SHPRHQ149N8 1683 aa20.86■□□□□ 0.93
DDX39A-221ENST00000593026 SBNO1A3KN83 1393 aa20.85■□□□□ 0.93
DDX39A-221ENST00000593026 TMC1Q8TDI8 760 aa20.84■□□□□ 0.93
DDX39A-221ENST00000593026 MED1Q15648 1581 aaPredicted RBP20.84■□□□□ 0.93
DDX39A-221ENST00000593026 TRPM3Q9HCF6 1732 aaPredicted RBP20.84■□□□□ 0.93
DDX39A-221ENST00000593026 PNPLA6Q8IY17 1366 aa20.84■□□□□ 0.93
DDX39A-221ENST00000593026 SPATA31A3Q5VYP0 1347 aa20.83■□□□□ 0.93
DDX39A-221ENST00000593026 TNS3Q68CZ2 1445 aa20.83■□□□□ 0.93
DDX39A-221ENST00000593026 NINLQ9Y2I6 1382 aa20.83■□□□□ 0.92
DDX39A-221ENST00000593026 USP6P35125 1406 aa20.8■□□□□ 0.92
DDX39A-221ENST00000593026 AKAP12Q02952 1782 aa20.8■□□□□ 0.92
DDX39A-221ENST00000593026 PAK3O75914 559 aaPredicted RBP20.8■□□□□ 0.92
DDX39A-221ENST00000593026 PHF23Q9BUL5 403 aaPredicted RBP20.8■□□□□ 0.92
DDX39A-221ENST00000593026 SLC12A5Q9H2X9 1139 aa20.8■□□□□ 0.92
DDX39A-221ENST00000593026 SPATA31A6Q5VVP1 1343 aa20.79■□□□□ 0.92
DDX39A-221ENST00000593026 CPSF1Q10570 1443 aaKnown RBP20.79■□□□□ 0.92
DDX39A-221ENST00000593026 LMOD2Q6P5Q4 547 aa20.79■□□□□ 0.92
DDX39A-221ENST00000593026 ARHGEF10O15013 1369 aa20.79■□□□□ 0.92
DDX39A-221ENST00000593026 COL22A1Q8NFW1 1626 aaPredicted RBP20.78■□□□□ 0.92
DDX39A-221ENST00000593026 ALS2Q96Q42 1657 aa20.78■□□□□ 0.92
DDX39A-221ENST00000593026 BRD4O60885 1362 aaPredicted RBP20.78■□□□□ 0.92
DDX39A-221ENST00000593026 ILDR2Q71H61 639 aa20.78■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms