RNA–Protein interactions for RNA: ENST00000587988.5

SMARCA4-213, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 2

Gene SMARCA4, Length 552 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-213ENST00000587988 USP47Q96K76 1375 aa15.14■□□□□ 0.01
SMARCA4-213ENST00000587988 ADGRL3Q9HAR2 1447 aa15.14■□□□□ 0.01
SMARCA4-213ENST00000587988 ST20-MTHFSA0A0A6YYL1 179 aa15.13■□□□□ 0.01
SMARCA4-213ENST00000587988 HIRIP3Q9BW71 556 aaPredicted RBP15.13■□□□□ 0.01
SMARCA4-213ENST00000587988 C19orf44Q9H6X5 657 aa15.13■□□□□ 0.01
SMARCA4-213ENST00000587988 QRICH2Q9H0J4 1663 aa15.12■□□□□ 0.01
SMARCA4-213ENST00000587988 EIF3AQ14152 1382 aaKnown RBP15.12■□□□□ 0.01
SMARCA4-213ENST00000587988 MSH6P52701 1360 aa15.11■□□□□ 0.01
SMARCA4-213ENST00000587988 IQSEC2Q5JU85 1478 aa15.1■□□□□ 0.01
SMARCA4-213ENST00000587988 HSPA5P11021 654 aaKnown RBP15.1■□□□□ 0.01
SMARCA4-213ENST00000587988 EIF4G2P78344 907 aaKnown RBP eCLIP15.1■□□□□ 0.01
SMARCA4-213ENST00000587988 TESK2Q96S53 571 aa15.09■□□□□ 0.01
SMARCA4-213ENST00000587988 ADGRB2O60241 1585 aa15.08■□□□□ 0
SMARCA4-213ENST00000587988 ATF3P18847 181 aa15.08■□□□□ 0
SMARCA4-213ENST00000587988 DCCP43146 1447 aa15.08■□□□□ 0
SMARCA4-213ENST00000587988 CDC42BPGQ6DT37 1551 aa15.07■□□□□ 0
SMARCA4-213ENST00000587988 NUTM2FA1L443 756 aa15.07■□□□□ 0
SMARCA4-213ENST00000587988 WASLO00401 505 aaPredicted RBP15.07■□□□□ 0
SMARCA4-213ENST00000587988 CADPS2Q86UW7 1296 aa15.07■□□□□ 0
SMARCA4-213ENST00000587988 TULP4Q9NRJ4 1543 aa15.07■□□□□ 0
SMARCA4-213ENST00000587988 CDK19Q9BWU1 502 aa15.06■□□□□ 0
SMARCA4-213ENST00000587988 SBNO2Q9Y2G9 1366 aa15.06■□□□□ 0
SMARCA4-213ENST00000587988 FMN2Q9NZ56 1722 aa15.06■□□□□ 0
SMARCA4-213ENST00000587988 UBAP1LF5GYI3 381 aa15.05■□□□□ -0
SMARCA4-213ENST00000587988 MST1RQ04912 1400 aa15.05■□□□□ -0
SMARCA4-213ENST00000587988 CABP2Q9NPB3 220 aa15.04■□□□□ -0
SMARCA4-213ENST00000587988 SLAIN2Q9P270 581 aa15.04■□□□□ -0
SMARCA4-213ENST00000587988 EVC2Q86UK5 1308 aa15.03■□□□□ -0
SMARCA4-213ENST00000587988 PRR36Q9H6K5 1346 aa15.03■□□□□ -0
SMARCA4-213ENST00000587988 TOM1O60784 492 aa15.03■□□□□ -0
SMARCA4-213ENST00000587988 RGPD8O14715 1765 aaPredicted RBP15.03■□□□□ -0
SMARCA4-213ENST00000587988 USP32Q8NFA0 1604 aa15.03■□□□□ -0
SMARCA4-213ENST00000587988 C1orf167Q5SNV9 1468 aa15.02■□□□□ -0
SMARCA4-213ENST00000587988 DISP3Q9P2K9 1392 aa15.02■□□□□ -0
SMARCA4-213ENST00000587988 SRPK2P78362 688 aaKnown RBP15.02■□□□□ -0
SMARCA4-213ENST00000587988 PIP4K2BP78356 416 aa15.01□□□□□ -0.01
SMARCA4-213ENST00000587988 NUDT16Q96DE0 195 aaKnown RBP15.01□□□□□ -0.01
SMARCA4-213ENST00000587988 ORAI2Q96SN7 254 aa15.01□□□□□ -0.01
SMARCA4-213ENST00000587988 TMF1P82094 1093 aa15□□□□□ -0.01
SMARCA4-213ENST00000587988 ATP7BP35670 1465 aa15□□□□□ -0.01
SMARCA4-213ENST00000587988 C11orf95C9JLR9 678 aaPredicted RBP14.99□□□□□ -0.01
SMARCA4-213ENST00000587988 ESCO1Q5FWF5 840 aa14.99□□□□□ -0.01
SMARCA4-213ENST00000587988 ANKARQ7Z5J8 1434 aa14.99□□□□□ -0.01
SMARCA4-213ENST00000587988 BRINP3Q76B58 766 aa14.98□□□□□ -0.01
SMARCA4-213ENST00000587988 SCAF1Q9H7N4 1312 aaKnown RBP14.97□□□□□ -0.01
SMARCA4-213ENST00000587988 ROBO1Q9Y6N7 1651 aa14.97□□□□□ -0.01
SMARCA4-213ENST00000587988 SLC24A1O60721 1099 aa14.97□□□□□ -0.01
SMARCA4-213ENST00000587988 PMFBP1Q8TBY8 1022 aa14.96□□□□□ -0.01
SMARCA4-213ENST00000587988 CCDC61Q9Y6R9 512 aa14.96□□□□□ -0.01
SMARCA4-213ENST00000587988 DDX17Q92841 729 aaKnown RBP14.95□□□□□ -0.02
SMARCA4-213ENST00000587988 PUS7Q96PZ0 661 aaKnown RBP14.95□□□□□ -0.02
SMARCA4-213ENST00000587988 PHF8Q9UPP1 1060 aa14.95□□□□□ -0.02
SMARCA4-213ENST00000587988 TOPAZ1Q8N9V7 1692 aa14.95□□□□□ -0.02
SMARCA4-213ENST00000587988 PPIP5K1Q6PFW1 1433 aa14.94□□□□□ -0.02
SMARCA4-213ENST00000587988 CABP1Q9NZU7 370 aa14.94□□□□□ -0.02
SMARCA4-213ENST00000587988 ATAD2Q6PL18 1390 aa14.94□□□□□ -0.02
SMARCA4-213ENST00000587988 ITSN1Q15811 1721 aa14.94□□□□□ -0.02
SMARCA4-213ENST00000587988 PLEKHG3A1L390 1219 aa14.93□□□□□ -0.02
SMARCA4-213ENST00000587988 FBXO41Q8TF61 875 aa14.93□□□□□ -0.02
SMARCA4-213ENST00000587988 POLR3GLQ9BT43 218 aa14.93□□□□□ -0.02
SMARCA4-213ENST00000587988 FOXO3O43524 673 aa14.92□□□□□ -0.02
SMARCA4-213ENST00000587988 CDCA8Q53HL2 280 aa14.92□□□□□ -0.02
SMARCA4-213ENST00000587988 SLC12A5Q9H2X9 1139 aa14.92□□□□□ -0.02
SMARCA4-213ENST00000587988 KIF7Q2M1P5 1343 aa14.92□□□□□ -0.02
SMARCA4-213ENST00000587988 KIF1AQ12756 1690 aa14.91□□□□□ -0.02
SMARCA4-213ENST00000587988 TMC1Q8TDI8 760 aa14.91□□□□□ -0.02
SMARCA4-213ENST00000587988 ACEP12821 1306 aa14.91□□□□□ -0.02
SMARCA4-213ENST00000587988 XPCQ01831 940 aaPredicted RBP14.9□□□□□ -0.02
SMARCA4-213ENST00000587988 NGDNQ8NEJ9 315 aaKnown RBP14.9□□□□□ -0.02
SMARCA4-213ENST00000587988 NHSL1Q5SYE7 1610 aa14.9□□□□□ -0.02
SMARCA4-213ENST00000587988 WASHC2AQ641Q2 1341 aa14.9□□□□□ -0.02
SMARCA4-213ENST00000587988 POLR3AO14802 1390 aaPredicted RBP14.89□□□□□ -0.03
SMARCA4-213ENST00000587988 MYOM1P52179 1685 aa14.89□□□□□ -0.03
SMARCA4-213ENST00000587988 CD163L1Q9NR16 1453 aa14.89□□□□□ -0.03
SMARCA4-213ENST00000587988 AHDC1Q5TGY3 1603 aaPredicted RBP14.88□□□□□ -0.03
SMARCA4-213ENST00000587988 CCDC7Q96M83 1385 aa14.88□□□□□ -0.03
SMARCA4-213ENST00000587988 NPHP3Q7Z494 1330 aa14.88□□□□□ -0.03
SMARCA4-213ENST00000587988 HSPA1LP34931 641 aa14.87□□□□□ -0.03
SMARCA4-213ENST00000587988 PSME1Q06323 249 aa14.87□□□□□ -0.03
SMARCA4-213ENST00000587988 KRT28Q7Z3Y7 464 aa14.87□□□□□ -0.03
SMARCA4-213ENST00000587988 PXDNQ92626 1479 aa14.87□□□□□ -0.03
SMARCA4-213ENST00000587988 PHLPP1O60346 1717 aa14.86□□□□□ -0.03
SMARCA4-213ENST00000587988 AKAP12Q02952 1782 aa14.86□□□□□ -0.03
SMARCA4-213ENST00000587988 CPSF1Q10570 1443 aaKnown RBP14.86□□□□□ -0.03
SMARCA4-213ENST00000587988 SOS2Q07890 1332 aaPredicted RBP14.86□□□□□ -0.03
SMARCA4-213ENST00000587988 NINLQ9Y2I6 1382 aa14.85□□□□□ -0.03
SMARCA4-213ENST00000587988 A0A1W2PP64 1363 aa14.85□□□□□ -0.03
SMARCA4-213ENST00000587988 COL16A1Q07092 1604 aaPredicted RBP14.84□□□□□ -0.03
SMARCA4-213ENST00000587988 ZNF692Q9BU19 519 aaPredicted RBP14.84□□□□□ -0.03
SMARCA4-213ENST00000587988 USP6P35125 1406 aa14.83□□□□□ -0.03
SMARCA4-213ENST00000587988 TRPM3Q9HCF6 1732 aaPredicted RBP14.83□□□□□ -0.03
SMARCA4-213ENST00000587988 HDGFL2Q7Z4V5 671 aaPredicted RBP14.83□□□□□ -0.04
SMARCA4-213ENST00000587988 TERF2IPQ9NYB0 399 aa14.83□□□□□ -0.04
SMARCA4-213ENST00000587988 KTN1Q86UP2 1357 aaKnown RBP14.83□□□□□ -0.04
SMARCA4-213ENST00000587988 ANKRD36BQ8N2N9 1353 aa14.83□□□□□ -0.04
SMARCA4-213ENST00000587988 CARD14Q9BXL6 1004 aa14.82□□□□□ -0.04
SMARCA4-213ENST00000587988 MON2Q7Z3U7 1717 aa14.82□□□□□ -0.04
SMARCA4-213ENST00000587988 SSH2Q76I76 1423 aa14.82□□□□□ -0.04
SMARCA4-213ENST00000587988 ZNF316A6NFI3 1004 aaPredicted RBP14.81□□□□□ -0.04
SMARCA4-213ENST00000587988 PAK3O75914 559 aaPredicted RBP14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 346.4 ms