RNA–Protein interactions for RNA: ENST00000587470.1

VMP1-205, Transcript of vacuole membrane protein 1, humanhuman

TSL 2

Gene VMP1, Length 995 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-205ENST00000587470 TRIM66O15016 1216 aa10.42□□□□□ -0.74
VMP1-205ENST00000587470 DGAT1O75907 488 aa10.42□□□□□ -0.74
VMP1-205ENST00000587470 TNFRSF10AO00220 468 aa10.41□□□□□ -0.74
VMP1-205ENST00000587470 Q3C1V9 767 aa10.41□□□□□ -0.74
VMP1-205ENST00000587470 ZNF787Q6DD87 383 aa10.41□□□□□ -0.74
VMP1-205ENST00000587470 BRICD5Q6PL45 260 aa10.41□□□□□ -0.74
VMP1-205ENST00000587470 PRDM9Q9NQV7 894 aa10.4□□□□□ -0.74
VMP1-205ENST00000587470 POTECB2RU33 542 aa10.39□□□□□ -0.75
VMP1-205ENST00000587470 GIGYF2Q6Y7W6 1299 aaKnown RBP10.39□□□□□ -0.75
VMP1-205ENST00000587470 NUTM1Q86Y26 1132 aa10.39□□□□□ -0.75
VMP1-205ENST00000587470 RNF19BQ6ZMZ0 732 aa10.38□□□□□ -0.75
VMP1-205ENST00000587470 HOXA2O43364 376 aa10.37□□□□□ -0.75
VMP1-205ENST00000587470 RPIAP49247 311 aa10.37□□□□□ -0.75
VMP1-205ENST00000587470 PKDCCQ504Y2 493 aa10.37□□□□□ -0.75
VMP1-205ENST00000587470 ZNF775Q96BV0 537 aaPredicted RBP10.37□□□□□ -0.75
VMP1-205ENST00000587470 FCF1Q9Y324 198 aaKnown RBP10.37□□□□□ -0.75
VMP1-205ENST00000587470 SLC24A3Q9HC58 644 aa10.36□□□□□ -0.75
VMP1-205ENST00000587470 MSS51Q4VC12 460 aa10.35□□□□□ -0.75
VMP1-205ENST00000587470 PARP9Q8IXQ6 854 aa10.35□□□□□ -0.75
VMP1-205ENST00000587470 FAM187AA6NFU0 413 aa10.34□□□□□ -0.75
VMP1-205ENST00000587470 HLA-CQ95604 372 aa10.34□□□□□ -0.75
VMP1-205ENST00000587470 TOR4AQ9NXH8 423 aa10.34□□□□□ -0.75
VMP1-205ENST00000587470 PDE4DQ08499 809 aa10.33□□□□□ -0.76
VMP1-205ENST00000587470 SPIRE2Q8WWL2 714 aa10.33□□□□□ -0.76
VMP1-205ENST00000587470 USB1Q9BQ65 265 aaKnown RBP10.33□□□□□ -0.76
VMP1-205ENST00000587470 BEGAINQ9BUH8 593 aa10.32□□□□□ -0.76
VMP1-205ENST00000587470 AAASQ9NRG9 546 aa10.32□□□□□ -0.76
VMP1-205ENST00000587470 ST8SIA5O15466 376 aa10.31□□□□□ -0.76
VMP1-205ENST00000587470 GUCA2AQ02747 115 aa10.31□□□□□ -0.76
VMP1-205ENST00000587470 FDX1P10109 184 aa10.3□□□□□ -0.76
VMP1-205ENST00000587470 MMP16P51512 607 aa10.3□□□□□ -0.76
VMP1-205ENST00000587470 FOXC1Q12948 553 aa10.3□□□□□ -0.76
VMP1-205ENST00000587470 CRIPAKQ8N1N5 446 aa10.3□□□□□ -0.76
VMP1-205ENST00000587470 AVPP01185 164 aa10.29□□□□□ -0.76
VMP1-205ENST00000587470 MS4A1P11836 297 aa10.29□□□□□ -0.76
VMP1-205ENST00000587470 DIXDC1Q155Q3 683 aa10.29□□□□□ -0.76
VMP1-205ENST00000587470 MOXD2PA6NHM9 499 aa10.27□□□□□ -0.77
VMP1-205ENST00000587470 DACH1Q9UI36 760 aa10.27□□□□□ -0.77
VMP1-205ENST00000587470 NDUFV2P19404 249 aa10.26□□□□□ -0.77
VMP1-205ENST00000587470 LCE2AQ5TA79 106 aaPredicted RBP10.26□□□□□ -0.77
VMP1-205ENST00000587470 SYMPKQ92797 1274 aaKnown RBP10.26□□□□□ -0.77
VMP1-205ENST00000587470 TBC1D2Q9BYX2 928 aa10.26□□□□□ -0.77
VMP1-205ENST00000587470 PCDHGC3Q9UN70 934 aa10.26□□□□□ -0.77
VMP1-205ENST00000587470 DXOO77932 396 aaKnown RBP10.25□□□□□ -0.77
VMP1-205ENST00000587470 CD2BP2O95400 341 aaKnown RBP10.25□□□□□ -0.77
VMP1-205ENST00000587470 RETREG3Q86VR2 466 aa10.25□□□□□ -0.77
VMP1-205ENST00000587470 C6orf229H3BNL8 230 aa10.24□□□□□ -0.77
VMP1-205ENST00000587470 GJA5P36382 358 aa10.24□□□□□ -0.77
VMP1-205ENST00000587470 ZBTB24O43167 697 aaPredicted RBP10.23□□□□□ -0.77
VMP1-205ENST00000587470 WNT7AO00755 349 aa10.21□□□□□ -0.77
VMP1-205ENST00000587470 JUNDP17535 347 aa10.21□□□□□ -0.77
VMP1-205ENST00000587470 SMCPP49901 116 aaPredicted RBP10.21□□□□□ -0.77
VMP1-205ENST00000587470 SPDYE5A6NIY4 337 aa10.2□□□□□ -0.78
VMP1-205ENST00000587470 TRIM32Q13049 653 aa10.2□□□□□ -0.78
VMP1-205ENST00000587470 RSBN1LQ6PCB5 846 aaPredicted RBP10.2□□□□□ -0.78
VMP1-205ENST00000587470 SPTLC1O15269 473 aa10.19□□□□□ -0.78
VMP1-205ENST00000587470 SMPD1P17405 629 aa10.19□□□□□ -0.78
VMP1-205ENST00000587470 MTMR2Q13614 643 aa10.19□□□□□ -0.78
VMP1-205ENST00000587470 CYP4X1Q8N118 509 aa10.19□□□□□ -0.78
VMP1-205ENST00000587470 RIC3Q7Z5B4 369 aa10.18□□□□□ -0.78
VMP1-205ENST00000587470 CCDC24Q8N4L8 307 aa10.18□□□□□ -0.78
VMP1-205ENST00000587470 PCDHB15Q9Y5E8 787 aa10.17□□□□□ -0.78
VMP1-205ENST00000587470 SKOR1P84550 965 aa10.16□□□□□ -0.78
VMP1-205ENST00000587470 CTC1Q2NKJ3 1217 aa10.16□□□□□ -0.78
VMP1-205ENST00000587470 PRR7Q8TB68 274 aa10.16□□□□□ -0.78
VMP1-205ENST00000587470 MRGPRX2Q96LB1 330 aa10.16□□□□□ -0.78
VMP1-205ENST00000587470 MYSM1Q5VVJ2 828 aa10.15□□□□□ -0.78
VMP1-205ENST00000587470 DESI1Q6ICB0 168 aa10.15□□□□□ -0.78
VMP1-205ENST00000587470 NUDT12Q9BQG2 462 aa10.15□□□□□ -0.78
VMP1-205ENST00000587470 GMPR2Q9P2T1 348 aaKnown RBP10.15□□□□□ -0.78
VMP1-205ENST00000587470 AXIN1O15169 862 aa10.14□□□□□ -0.79
VMP1-205ENST00000587470 PRPF38BQ5VTL8 546 aaKnown RBP10.14□□□□□ -0.79
VMP1-205ENST00000587470 SNIP1Q8TAD8 396 aaKnown RBP10.14□□□□□ -0.79
VMP1-205ENST00000587470 RSPH6AQ9H0K4 717 aa10.14□□□□□ -0.79
VMP1-205ENST00000587470 ZBTB3Q9H5J0 574 aa10.14□□□□□ -0.79
VMP1-205ENST00000587470 J3QL48 77 aa10.13□□□□□ -0.79
VMP1-205ENST00000587470 HRCP23327 699 aa10.13□□□□□ -0.79
VMP1-205ENST00000587470 TUSC1Q2TAM9 212 aa10.13□□□□□ -0.79
VMP1-205ENST00000587470 PTPRNQ16849 979 aa10.12□□□□□ -0.79
VMP1-205ENST00000587470 TREML4Q6UXN2 200 aa10.12□□□□□ -0.79
VMP1-205ENST00000587470 KDM4CQ9H3R0 1056 aa10.12□□□□□ -0.79
VMP1-205ENST00000587470 LIMD1Q9UGP4 676 aa10.12□□□□□ -0.79
VMP1-205ENST00000587470 TTC24A2A3L6 582 aaPredicted RBP10.11□□□□□ -0.79
VMP1-205ENST00000587470 CCNYL3P0C7X3 344 aa10.11□□□□□ -0.79
VMP1-205ENST00000587470 CSPP1Q1MSJ5 1256 aa10.1□□□□□ -0.79
VMP1-205ENST00000587470 PTCRAQ6ISU1 281 aaPredicted RBP10.1□□□□□ -0.79
VMP1-205ENST00000587470 GPBP1L1Q9HC44 474 aaPredicted RBP10.1□□□□□ -0.79
VMP1-205ENST00000587470 EVA1BQ9NVM1 165 aa10.1□□□□□ -0.79
VMP1-205ENST00000587470 CABLES1Q8TDN4 633 aa10.09□□□□□ -0.79
VMP1-205ENST00000587470 NUTM2BA6NNL0 878 aaPredicted RBP10.08□□□□□ -0.8
VMP1-205ENST00000587470 NUTM2EB1AL46 878 aaPredicted RBP10.08□□□□□ -0.8
VMP1-205ENST00000587470 CFAP99D6REC4 459 aa10.08□□□□□ -0.8
VMP1-205ENST00000587470 CLK2P49760 499 aaKnown RBP10.08□□□□□ -0.8
VMP1-205ENST00000587470 WNT7BP56706 349 aa10.08□□□□□ -0.8
VMP1-205ENST00000587470 LCE2CQ5TA81 110 aa10.08□□□□□ -0.8
VMP1-205ENST00000587470 RC3H1Q5TC82 1133 aaKnown RBP10.08□□□□□ -0.8
VMP1-205ENST00000587470 NUTM2DQ5VT03 806 aaPredicted RBP10.08□□□□□ -0.8
VMP1-205ENST00000587470 NUTM2AQ8IVF1 878 aaPredicted RBP10.08□□□□□ -0.8
VMP1-205ENST00000587470 HPS1Q92902 700 aa10.08□□□□□ -0.8
VMP1-205ENST00000587470 DDRGK1Q96HY6 314 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 219.6 ms