RNA–Protein interactions for RNA: ENST00000586253.1

SMAD4-204, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 784 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-204ENST00000586253 MPHOSPH9Q99550 1183 aa11.87□□□□□ -0.51
SMAD4-204ENST00000586253 PCDHB8Q9UN66 801 aa11.87□□□□□ -0.51
SMAD4-204ENST00000586253 ADGRB3O60242 1522 aa11.86□□□□□ -0.51
SMAD4-204ENST00000586253 STRCQ7RTU9 1775 aa11.85□□□□□ -0.51
SMAD4-204ENST00000586253 SLIT1O75093 1534 aa11.85□□□□□ -0.51
SMAD4-204ENST00000586253 ARHGAP23Q9P227 1491 aa11.84□□□□□ -0.51
SMAD4-204ENST00000586253 TMEM131LA2VDJ0 1609 aa11.84□□□□□ -0.51
SMAD4-204ENST00000586253 POLR1AO95602 1720 aaPredicted RBP11.83□□□□□ -0.52
SMAD4-204ENST00000586253 PCDH10Q9P2E7 1040 aa11.83□□□□□ -0.52
SMAD4-204ENST00000586253 CLTCL1P53675 1640 aa11.82□□□□□ -0.52
SMAD4-204ENST00000586253 TMEM2Q9UHN6 1383 aa11.82□□□□□ -0.52
SMAD4-204ENST00000586253 ANKLE2Q86XL3 938 aa11.81□□□□□ -0.52
SMAD4-204ENST00000586253 MED14O60244 1454 aa11.81□□□□□ -0.52
SMAD4-204ENST00000586253 KIF1BO60333 1816 aa11.81□□□□□ -0.52
SMAD4-204ENST00000586253 MYO5BQ9ULV0 1848 aa11.81□□□□□ -0.52
SMAD4-204ENST00000586253 NEURL4Q96JN8 1562 aa11.8□□□□□ -0.52
SMAD4-204ENST00000586253 CCDC144AA2RUR9 1427 aa11.8□□□□□ -0.52
SMAD4-204ENST00000586253 CHRM1P11229 460 aaPredicted RBP11.8□□□□□ -0.52
SMAD4-204ENST00000586253 SCAF11Q99590 1463 aaKnown RBP11.8□□□□□ -0.52
SMAD4-204ENST00000586253 NCKAP5LQ9HCH0 1330 aa11.79□□□□□ -0.52
SMAD4-204ENST00000586253 ZFYVE9O95405 1425 aa11.78□□□□□ -0.52
SMAD4-204ENST00000586253 PLCG2P16885 1265 aa11.78□□□□□ -0.52
SMAD4-204ENST00000586253 OCEL1Q9H607 264 aa11.78□□□□□ -0.52
SMAD4-204ENST00000586253 EID1Q9Y6B2 187 aa11.78□□□□□ -0.52
SMAD4-204ENST00000586253 ANKRD30BQ9BXX2 1392 aa11.78□□□□□ -0.52
SMAD4-204ENST00000586253 HDGFP51858 240 aaKnown RBP11.77□□□□□ -0.53
SMAD4-204ENST00000586253 IQGAP1P46940 1657 aa11.77□□□□□ -0.53
SMAD4-204ENST00000586253 NPHP4O75161 1426 aaPredicted RBP11.77□□□□□ -0.53
SMAD4-204ENST00000586253 RIMS2Q9UQ26 1411 aa11.77□□□□□ -0.53
SMAD4-204ENST00000586253 CHGAP10645 457 aaKnown RBP11.76□□□□□ -0.53
SMAD4-204ENST00000586253 LTKP29376 864 aa11.76□□□□□ -0.53
SMAD4-204ENST00000586253 TXNDC2Q86VQ3 553 aa11.76□□□□□ -0.53
SMAD4-204ENST00000586253 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.76□□□□□ -0.53
SMAD4-204ENST00000586253 GSE1Q14687 1217 aa11.75□□□□□ -0.53
SMAD4-204ENST00000586253 SLAIN1Q8ND83 568 aa11.75□□□□□ -0.53
SMAD4-204ENST00000586253 SPATA31E1Q6ZUB1 1445 aa11.75□□□□□ -0.53
SMAD4-204ENST00000586253 IFNLR1Q8IU57 520 aaPredicted RBP11.74□□□□□ -0.53
SMAD4-204ENST00000586253 PDCD7Q8N8D1 485 aaKnown RBP11.74□□□□□ -0.53
SMAD4-204ENST00000586253 RPGRIP1LQ68CZ1 1315 aa11.74□□□□□ -0.53
SMAD4-204ENST00000586253 NEXMIFQ5QGS0 1516 aa11.74□□□□□ -0.53
SMAD4-204ENST00000586253 KLHL34Q8N239 644 aa11.73□□□□□ -0.53
SMAD4-204ENST00000586253 PLEKHG1Q9ULL1 1385 aa11.73□□□□□ -0.53
SMAD4-204ENST00000586253 DHX57Q6P158 1386 aaKnown RBP11.72□□□□□ -0.53
SMAD4-204ENST00000586253 PPP1R15AO75807 674 aaPredicted RBP11.72□□□□□ -0.53
SMAD4-204ENST00000586253 ZNF326Q5BKZ1 582 aaKnown RBP11.72□□□□□ -0.53
SMAD4-204ENST00000586253 PCGF6Q9BYE7 350 aa11.72□□□□□ -0.53
SMAD4-204ENST00000586253 ST18O60284 1047 aa11.71□□□□□ -0.53
SMAD4-204ENST00000586253 PPLO60437 1756 aa11.71□□□□□ -0.54
SMAD4-204ENST00000586253 ZNF467Q7Z7K2 595 aaPredicted RBP11.7□□□□□ -0.54
SMAD4-204ENST00000586253 DIP2AQ14689 1571 aa11.7□□□□□ -0.54
SMAD4-204ENST00000586253 IFT172Q9UG01 1749 aa11.69□□□□□ -0.54
SMAD4-204ENST00000586253 VGFO15240 615 aaPredicted RBP11.69□□□□□ -0.54
SMAD4-204ENST00000586253 ILDR1Q86SU0 546 aaPredicted RBP11.69□□□□□ -0.54
SMAD4-204ENST00000586253 SETBP1Q9Y6X0 1596 aa11.69□□□□□ -0.54
SMAD4-204ENST00000586253 LTBP4Q8N2S1 1624 aa11.68□□□□□ -0.54
SMAD4-204ENST00000586253 ADAMTS13Q76LX8 1427 aa11.67□□□□□ -0.54
SMAD4-204ENST00000586253 NRXN3Q9Y4C0 1643 aa11.67□□□□□ -0.54
SMAD4-204ENST00000586253 CPS1P31327 1500 aa11.66□□□□□ -0.54
SMAD4-204ENST00000586253 MYOM2P54296 1465 aa11.66□□□□□ -0.54
SMAD4-204ENST00000586253 RGL3Q3MIN7 710 aa11.66□□□□□ -0.54
SMAD4-204ENST00000586253 NUTM2DQ5VT03 806 aaPredicted RBP11.66□□□□□ -0.54
SMAD4-204ENST00000586253 STAC3Q96MF2 364 aa11.66□□□□□ -0.54
SMAD4-204ENST00000586253 TBX22Q9Y458 520 aa11.66□□□□□ -0.54
SMAD4-204ENST00000586253 PIK3R4Q99570 1358 aa11.66□□□□□ -0.54
SMAD4-204ENST00000586253 ZNF335Q9H4Z2 1342 aaPredicted RBP11.65□□□□□ -0.54
SMAD4-204ENST00000586253 PSEN1P49768 467 aa11.65□□□□□ -0.54
SMAD4-204ENST00000586253 BCANQ96GW7 911 aa11.65□□□□□ -0.54
SMAD4-204ENST00000586253 NRXN1Q9ULB1 1477 aa11.64□□□□□ -0.55
SMAD4-204ENST00000586253 NWD1Q149M9 1564 aa11.64□□□□□ -0.55
SMAD4-204ENST00000586253 SLC26A8Q96RN1 970 aa11.64□□□□□ -0.55
SMAD4-204ENST00000586253 PIK3C2GO75747 1445 aa11.63□□□□□ -0.55
SMAD4-204ENST00000586253 STRCP1A6NGW2 1772 aa11.63□□□□□ -0.55
SMAD4-204ENST00000586253 IQSEC2Q5JU85 1478 aa11.63□□□□□ -0.55
SMAD4-204ENST00000586253 CHD2O14647 1828 aaKnown RBP11.63□□□□□ -0.55
SMAD4-204ENST00000586253 KCNA6P17658 529 aa11.62□□□□□ -0.55
SMAD4-204ENST00000586253 CDAN1Q8IWY9 1227 aa11.62□□□□□ -0.55
SMAD4-204ENST00000586253 SPOCK2Q92563 424 aa11.62□□□□□ -0.55
SMAD4-204ENST00000586253 SETD1AO15047 1707 aaKnown RBP11.62□□□□□ -0.55
SMAD4-204ENST00000586253 NKTRP30414 1462 aaKnown RBP11.62□□□□□ -0.55
SMAD4-204ENST00000586253 ADGRF5Q8IZF2 1346 aa11.61□□□□□ -0.55
SMAD4-204ENST00000586253 CLSPNQ9HAW4 1339 aa11.61□□□□□ -0.55
SMAD4-204ENST00000586253 ALKQ9UM73 1620 aa11.61□□□□□ -0.55
SMAD4-204ENST00000586253 LAMC1P11047 1609 aa11.6□□□□□ -0.55
SMAD4-204ENST00000586253 CERKQ8TCT0 537 aa11.6□□□□□ -0.55
SMAD4-204ENST00000586253 DCAF11Q8TEB1 546 aa11.59□□□□□ -0.55
SMAD4-204ENST00000586253 SIN3AQ96ST3 1273 aa11.59□□□□□ -0.55
SMAD4-204ENST00000586253 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.59□□□□□ -0.55
SMAD4-204ENST00000586253 XRN1Q8IZH2 1706 aaKnown RBP11.59□□□□□ -0.55
SMAD4-204ENST00000586253 LRRC7Q96NW7 1537 aa11.59□□□□□ -0.55
SMAD4-204ENST00000586253 PRAG1Q86YV5 1406 aa11.59□□□□□ -0.55
SMAD4-204ENST00000586253 METP08581 1390 aa11.58□□□□□ -0.56
SMAD4-204ENST00000586253 PDAP1Q13442 181 aaKnown RBP11.57□□□□□ -0.56
SMAD4-204ENST00000586253 C14orf93Q9H972 538 aaKnown RBP11.57□□□□□ -0.56
SMAD4-204ENST00000586253 PTPRUQ92729 1446 aa11.57□□□□□ -0.56
SMAD4-204ENST00000586253 MKRN3Q13064 507 aaKnown RBP11.56□□□□□ -0.56
SMAD4-204ENST00000586253 NEUROD1Q13562 356 aa11.56□□□□□ -0.56
SMAD4-204ENST00000586253 PTCH1Q13635 1447 aa11.56□□□□□ -0.56
SMAD4-204ENST00000586253 L3MBTL2Q969R5 705 aa11.56□□□□□ -0.56
SMAD4-204ENST00000586253 AMOTL2Q9Y2J4 779 aa11.56□□□□□ -0.56
SMAD4-204ENST00000586253 NCOA3Q9Y6Q9 1424 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms