RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 A2ML1A8K2U0 1454 aa15.12■□□□□ 0.01
LIG3-204ENST00000585740 ALKQ9UM73 1620 aa15.11■□□□□ 0.01
LIG3-204ENST00000585740 TMEM132EQ6IEE7 984 aa15.11■□□□□ 0.01
LIG3-204ENST00000585740 ZMYM3Q14202 1370 aa15.11■□□□□ 0.01
LIG3-204ENST00000585740 RIMS2Q9UQ26 1411 aa15.1■□□□□ 0.01
LIG3-204ENST00000585740 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.1■□□□□ 0.01
LIG3-204ENST00000585740 NINLQ9Y2I6 1382 aa15.1■□□□□ 0.01
LIG3-204ENST00000585740 PPP2R1AP30153 589 aa15.09■□□□□ 0.01
LIG3-204ENST00000585740 HSPA1LP34931 641 aa15.09■□□□□ 0.01
LIG3-204ENST00000585740 HDGFP51858 240 aaKnown RBP15.09■□□□□ 0.01
LIG3-204ENST00000585740 NUDCQ9Y266 331 aa15.09■□□□□ 0.01
LIG3-204ENST00000585740 BLMP54132 1417 aaPredicted RBP15.09■□□□□ 0.01
LIG3-204ENST00000585740 YTHDC2Q9H6S0 1430 aaKnown RBP15.09■□□□□ 0.01
LIG3-204ENST00000585740 DLC1Q96QB1 1528 aa15.08■□□□□ 0.01
LIG3-204ENST00000585740 PDE3BQ13370 1112 aa15.08■□□□□ 0
LIG3-204ENST00000585740 NUTM2DQ5VT03 806 aaPredicted RBP15.08■□□□□ 0
LIG3-204ENST00000585740 TULP4Q9NRJ4 1543 aa15.07■□□□□ 0
LIG3-204ENST00000585740 PIP4K2BP78356 416 aa15.07■□□□□ 0
LIG3-204ENST00000585740 MED1Q15648 1581 aaPredicted RBP15.07■□□□□ 0
LIG3-204ENST00000585740 SETD1AO15047 1707 aaKnown RBP15.06■□□□□ 0
LIG3-204ENST00000585740 TNRQ92752 1358 aa15.06■□□□□ 0
LIG3-204ENST00000585740 NSD2O96028 1365 aa15.04■□□□□ -0
LIG3-204ENST00000585740 ATAD2Q6PL18 1390 aa15.04■□□□□ -0
LIG3-204ENST00000585740 NSD3Q9BZ95 1437 aa15.03■□□□□ -0
LIG3-204ENST00000585740 ANKRD36BQ8N2N9 1353 aa15.03■□□□□ -0
LIG3-204ENST00000585740 WDR43Q15061 677 aaKnown RBP eCLIP15.03■□□□□ -0
LIG3-204ENST00000585740 KNDC1Q76NI1 1749 aa15.03■□□□□ -0
LIG3-204ENST00000585740 UBR1Q8IWV7 1749 aa15.03■□□□□ -0
LIG3-204ENST00000585740 NLRP1Q9C000 1473 aa15.02■□□□□ -0
LIG3-204ENST00000585740 CARD14Q9BXL6 1004 aa15.02■□□□□ -0
LIG3-204ENST00000585740 POGKQ9P215 609 aa15.02■□□□□ -0
LIG3-204ENST00000585740 TOM1O60784 492 aa15.01□□□□□ -0.01
LIG3-204ENST00000585740 CEP170BQ9Y4F5 1589 aaPredicted RBP15.01□□□□□ -0.01
LIG3-204ENST00000585740 NRXN3Q9Y4C0 1643 aa15□□□□□ -0.01
LIG3-204ENST00000585740 CGNL1Q0VF96 1302 aa15□□□□□ -0.01
LIG3-204ENST00000585740 STK26Q9P289 416 aa15□□□□□ -0.01
LIG3-204ENST00000585740 ABCC11Q96J66 1382 aa14.99□□□□□ -0.01
LIG3-204ENST00000585740 SLC12A5Q9H2X9 1139 aa14.99□□□□□ -0.01
LIG3-204ENST00000585740 ZNF142P52746 1687 aaPredicted RBP14.99□□□□□ -0.01
LIG3-204ENST00000585740 POLR3AO14802 1390 aaPredicted RBP14.98□□□□□ -0.01
LIG3-204ENST00000585740 SIRT1Q96EB6 747 aa14.98□□□□□ -0.01
LIG3-204ENST00000585740 PRAM1Q96QH2 718 aa14.98□□□□□ -0.01
LIG3-204ENST00000585740 ANKRD26Q9UPS8 1709 aa14.97□□□□□ -0.01
LIG3-204ENST00000585740 RNF123Q5XPI4 1314 aa14.97□□□□□ -0.01
LIG3-204ENST00000585740 MORC1Q86VD1 984 aa14.97□□□□□ -0.01
LIG3-204ENST00000585740 NGEFQ8N5V2 710 aa14.97□□□□□ -0.01
LIG3-204ENST00000585740 BCANQ96GW7 911 aa14.97□□□□□ -0.01
LIG3-204ENST00000585740 TMEM2Q9UHN6 1383 aa14.97□□□□□ -0.01
LIG3-204ENST00000585740 SRPK2P78362 688 aaKnown RBP14.96□□□□□ -0.01
LIG3-204ENST00000585740 TERF2IPQ9NYB0 399 aa14.96□□□□□ -0.01
LIG3-204ENST00000585740 CABP2Q9NPB3 220 aa14.95□□□□□ -0.02
LIG3-204ENST00000585740 PPP4R2Q9NY27 417 aa14.95□□□□□ -0.02
LIG3-204ENST00000585740 ADAMTS8Q9UP79 889 aa14.95□□□□□ -0.02
LIG3-204ENST00000585740 MINK1Q8N4C8 1332 aaPredicted RBP14.94□□□□□ -0.02
LIG3-204ENST00000585740 TECPR2O15040 1411 aa14.94□□□□□ -0.02
LIG3-204ENST00000585740 FAM135BQ49AJ0 1406 aa14.94□□□□□ -0.02
LIG3-204ENST00000585740 CPS1P31327 1500 aa14.94□□□□□ -0.02
LIG3-204ENST00000585740 MED14O60244 1454 aa14.94□□□□□ -0.02
LIG3-204ENST00000585740 SAFB2Q14151 953 aaKnown RBP eCLIP14.93□□□□□ -0.02
LIG3-204ENST00000585740 HDGFL2Q7Z4V5 671 aaPredicted RBP14.93□□□□□ -0.02
LIG3-204ENST00000585740 CFAP53Q96M91 514 aa14.92□□□□□ -0.02
LIG3-204ENST00000585740 PLEKHG1Q9ULL1 1385 aa14.92□□□□□ -0.02
LIG3-204ENST00000585740 KIF20BQ96Q89 1820 aa14.92□□□□□ -0.02
LIG3-204ENST00000585740 ATP7BP35670 1465 aa14.91□□□□□ -0.02
LIG3-204ENST00000585740 A0A1W2PP64 1363 aa14.91□□□□□ -0.02
LIG3-204ENST00000585740 CDK19Q9BWU1 502 aa14.91□□□□□ -0.02
LIG3-204ENST00000585740 SLIT1O75093 1534 aa14.91□□□□□ -0.02
LIG3-204ENST00000585740 SHPRHQ149N8 1683 aa14.9□□□□□ -0.02
LIG3-204ENST00000585740 ARHGAP23Q9P227 1491 aa14.89□□□□□ -0.03
LIG3-204ENST00000585740 METP08581 1390 aa14.88□□□□□ -0.03
LIG3-204ENST00000585740 IRX6P78412 446 aaPredicted RBP14.88□□□□□ -0.03
LIG3-204ENST00000585740 EID1Q9Y6B2 187 aa14.88□□□□□ -0.03
LIG3-204ENST00000585740 DIP2AQ14689 1571 aa14.88□□□□□ -0.03
LIG3-204ENST00000585740 CD163L1Q9NR16 1453 aa14.88□□□□□ -0.03
LIG3-204ENST00000585740 RCAN3Q9UKA8 241 aa14.87□□□□□ -0.03
LIG3-204ENST00000585740 SALL2Q9Y467 1007 aaPredicted RBP14.87□□□□□ -0.03
LIG3-204ENST00000585740 ADGRB2O60241 1585 aa14.86□□□□□ -0.03
LIG3-204ENST00000585740 ADAMTS13Q76LX8 1427 aa14.86□□□□□ -0.03
LIG3-204ENST00000585740 ANKLE2Q86XL3 938 aa14.86□□□□□ -0.03
LIG3-204ENST00000585740 ZNF521Q96K83 1311 aa14.86□□□□□ -0.03
LIG3-204ENST00000585740 WASLO00401 505 aaPredicted RBP14.85□□□□□ -0.03
LIG3-204ENST00000585740 NCBP3Q53F19 620 aaKnown RBP14.85□□□□□ -0.03
LIG3-204ENST00000585740 PLEKHH1Q9ULM0 1364 aa14.85□□□□□ -0.03
LIG3-204ENST00000585740 RRP1P56182 461 aaKnown RBP14.84□□□□□ -0.03
LIG3-204ENST00000585740 GOLGA2Q08379 1002 aa14.84□□□□□ -0.03
LIG3-204ENST00000585740 WAPLQ7Z5K2 1190 aa14.84□□□□□ -0.03
LIG3-204ENST00000585740 THEMISQ8N1K5 641 aaPredicted RBP14.84□□□□□ -0.03
LIG3-204ENST00000585740 ITSN1Q15811 1721 aa14.83□□□□□ -0.03
LIG3-204ENST00000585740 MTHFSP49914 203 aa14.83□□□□□ -0.04
LIG3-204ENST00000585740 TXNDC2Q86VQ3 553 aa14.83□□□□□ -0.04
LIG3-204ENST00000585740 RGS17Q9UGC6 210 aaPredicted RBP14.83□□□□□ -0.04
LIG3-204ENST00000585740 AKAP12Q02952 1782 aa14.83□□□□□ -0.04
LIG3-204ENST00000585740 CDC42BPGQ6DT37 1551 aa14.82□□□□□ -0.04
LIG3-204ENST00000585740 SENP3-EIF4A1A0A087X0R7 540 aa14.82□□□□□ -0.04
LIG3-204ENST00000585740 RUNDC1Q96C34 613 aa14.82□□□□□ -0.04
LIG3-204ENST00000585740 CABP1Q9NZU7 370 aa14.82□□□□□ -0.04
LIG3-204ENST00000585740 MON2Q7Z3U7 1717 aa14.82□□□□□ -0.04
LIG3-204ENST00000585740 EDC4Q6P2E9 1401 aaKnown RBP14.82□□□□□ -0.04
LIG3-204ENST00000585740 CDCA7LQ96GN5 454 aa14.81□□□□□ -0.04
LIG3-204ENST00000585740 NPHP4O75161 1426 aaPredicted RBP14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms