RNA–Protein interactions for RNA: ENST00000584897.5

SMCHD1-211, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,143 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-211ENST00000584897 PRR20CP86479 221 aa3.57□□□□□ -1.84
SMCHD1-211ENST00000584897 PRR20DP86480 221 aa3.57□□□□□ -1.84
SMCHD1-211ENST00000584897 PRR20BP86481 221 aa3.57□□□□□ -1.84
SMCHD1-211ENST00000584897 PRR20AP86496 221 aa3.57□□□□□ -1.84
SMCHD1-211ENST00000584897 CDHR5Q9HBB8 845 aa3.57□□□□□ -1.84
SMCHD1-211ENST00000584897 TIMELESSQ9UNS1 1208 aa3.57□□□□□ -1.84
SMCHD1-211ENST00000584897 KDM4AO75164 1064 aa3.56□□□□□ -1.84
SMCHD1-211ENST00000584897 ZNF697Q5TEC3 545 aa3.56□□□□□ -1.84
SMCHD1-211ENST00000584897 APLP1P51693 650 aa3.56□□□□□ -1.84
SMCHD1-211ENST00000584897 METTL3Q86U44 580 aaKnown RBP3.56□□□□□ -1.84
SMCHD1-211ENST00000584897 GJA5P36382 358 aa3.55□□□□□ -1.84
SMCHD1-211ENST00000584897 ZNF787Q6DD87 383 aa3.55□□□□□ -1.84
SMCHD1-211ENST00000584897 BLOC1S3Q6QNY0 202 aa3.55□□□□□ -1.84
SMCHD1-211ENST00000584897 UPP2O95045 317 aa3.55□□□□□ -1.84
SMCHD1-211ENST00000584897 SEMA3EO15041 775 aa3.55□□□□□ -1.84
SMCHD1-211ENST00000584897 WNT7BP56706 349 aa3.55□□□□□ -1.84
SMCHD1-211ENST00000584897 SCARF1Q14162 830 aa3.55□□□□□ -1.84
SMCHD1-211ENST00000584897 AK7Q96M32 723 aa3.55□□□□□ -1.84
SMCHD1-211ENST00000584897 MLLT3P42568 568 aaPredicted RBP3.55□□□□□ -1.84
SMCHD1-211ENST00000584897 TTLL12Q14166 644 aaPredicted RBP3.55□□□□□ -1.84
SMCHD1-211ENST00000584897 CDV3Q9UKY7 258 aaKnown RBP3.55□□□□□ -1.84
SMCHD1-211ENST00000584897 FAM187AA6NFU0 413 aa3.54□□□□□ -1.84
SMCHD1-211ENST00000584897 WASF2Q9Y6W5 498 aa3.54□□□□□ -1.84
SMCHD1-211ENST00000584897 MRC2Q9UBG0 1479 aa3.54□□□□□ -1.84
SMCHD1-211ENST00000584897 SCUBE3Q8IX30 993 aa3.54□□□□□ -1.84
SMCHD1-211ENST00000584897 USB1Q9BQ65 265 aaKnown RBP3.54□□□□□ -1.84
SMCHD1-211ENST00000584897 ESF1Q9H501 851 aaKnown RBP3.54□□□□□ -1.84
SMCHD1-211ENST00000584897 ZNF330Q9Y3S2 320 aaPredicted RBP3.54□□□□□ -1.84
SMCHD1-211ENST00000584897 RSF1Q96T23 1441 aaPredicted RBP3.54□□□□□ -1.84
SMCHD1-211ENST00000584897 FAM174AQ8TBP5 190 aa3.54□□□□□ -1.84
SMCHD1-211ENST00000584897 IRF6O14896 467 aa3.53□□□□□ -1.84
SMCHD1-211ENST00000584897 SPRYD7Q5W111 196 aa3.53□□□□□ -1.84
SMCHD1-211ENST00000584897 CCDC24Q8N4L8 307 aa3.53□□□□□ -1.84
SMCHD1-211ENST00000584897 HELBQ8NG08 1087 aaPredicted RBP3.53□□□□□ -1.84
SMCHD1-211ENST00000584897 SNIP1Q8TAD8 396 aaKnown RBP3.53□□□□□ -1.84
SMCHD1-211ENST00000584897 NPDC1Q9NQX5 325 aaPredicted RBP3.53□□□□□ -1.84
SMCHD1-211ENST00000584897 PEG3Q9GZU2 1588 aa3.53□□□□□ -1.84
SMCHD1-211ENST00000584897 GPKOWQ92917 476 aaPredicted RBP eCLIP3.53□□□□□ -1.842e-6■■■□□ 15.3
SMCHD1-211ENST00000584897 JUNDP17535 347 aa3.53□□□□□ -1.84
SMCHD1-211ENST00000584897 PRIM1P49642 420 aaKnown RBP3.53□□□□□ -1.84
SMCHD1-211ENST00000584897 MORN1Q5T089 497 aa3.53□□□□□ -1.84
SMCHD1-211ENST00000584897 RETREG3Q86VR2 466 aa3.53□□□□□ -1.84
SMCHD1-211ENST00000584897 ARAP1Q96P48 1450 aa3.52□□□□□ -1.85
SMCHD1-211ENST00000584897 MCCD1P59942 119 aaPredicted RBP3.52□□□□□ -1.85
SMCHD1-211ENST00000584897 FDX1P10109 184 aa3.52□□□□□ -1.85
SMCHD1-211ENST00000584897 INSM1Q01101 510 aaPredicted RBP3.52□□□□□ -1.85
SMCHD1-211ENST00000584897 DHX30Q7L2E3 1194 aaKnown RBP eCLIP3.52□□□□□ -1.856e-6■□□□□ 10
SMCHD1-211ENST00000584897 AXIN1O15169 862 aa3.52□□□□□ -1.85
SMCHD1-211ENST00000584897 GPR37O15354 613 aa3.52□□□□□ -1.85
SMCHD1-211ENST00000584897 NBPF14Q5TI25 921 aa3.52□□□□□ -1.85
SMCHD1-211ENST00000584897 FAM198AQ9UFP1 575 aa3.52□□□□□ -1.85
SMCHD1-211ENST00000584897 MS4A1P11836 297 aa3.51□□□□□ -1.85
SMCHD1-211ENST00000584897 RNF223E7ERA6 249 aa3.51□□□□□ -1.85
SMCHD1-211ENST00000584897 C6orf229H3BNL8 230 aa3.51□□□□□ -1.85
SMCHD1-211ENST00000584897 MDM2Q00987 491 aaPredicted RBP3.51□□□□□ -1.85
SMCHD1-211ENST00000584897 RBM26Q5T8P6 1007 aaKnown RBP3.51□□□□□ -1.85
SMCHD1-211ENST00000584897 BRICD5Q6PL45 260 aa3.51□□□□□ -1.85
SMCHD1-211ENST00000584897 SCRIBQ14160 1630 aa3.51□□□□□ -1.85
SMCHD1-211ENST00000584897 WNT7AO00755 349 aa3.51□□□□□ -1.85
SMCHD1-211ENST00000584897 S1PR4O95977 384 aa3.51□□□□□ -1.85
SMCHD1-211ENST00000584897 WWC1Q8IX03 1113 aa3.51□□□□□ -1.85
SMCHD1-211ENST00000584897 ZBTB3Q9H5J0 574 aa3.51□□□□□ -1.85
SMCHD1-211ENST00000584897 SPTLC1O15269 473 aa3.51□□□□□ -1.85
SMCHD1-211ENST00000584897 CD46P15529 392 aa3.51□□□□□ -1.85
SMCHD1-211ENST00000584897 FOXC1Q12948 553 aa3.51□□□□□ -1.85
SMCHD1-211ENST00000584897 NUTM2BA6NNL0 878 aaPredicted RBP3.5□□□□□ -1.85
SMCHD1-211ENST00000584897 NUTM2EB1AL46 878 aaPredicted RBP3.5□□□□□ -1.85
SMCHD1-211ENST00000584897 FECHP22830 423 aa3.5□□□□□ -1.85
SMCHD1-211ENST00000584897 NUTM2DQ5VT03 806 aaPredicted RBP3.5□□□□□ -1.85
SMCHD1-211ENST00000584897 BARGINQ6ZT62 677 aa3.5□□□□□ -1.85
SMCHD1-211ENST00000584897 NUTM2AQ8IVF1 878 aaPredicted RBP3.5□□□□□ -1.85
SMCHD1-211ENST00000584897 ZNF516Q92618 1163 aa3.5□□□□□ -1.85
SMCHD1-211ENST00000584897 PDS5BQ9NTI5 1447 aa3.5□□□□□ -1.85
SMCHD1-211ENST00000584897 ZC3H4Q9UPT8 1303 aaKnown RBP3.5□□□□□ -1.85
SMCHD1-211ENST00000584897 PRPF38BQ5VTL8 546 aaKnown RBP3.5□□□□□ -1.85
SMCHD1-211ENST00000584897 NESP48681 1621 aa3.49□□□□□ -1.85
SMCHD1-211ENST00000584897 GTF2E1P29083 439 aaPredicted RBP3.49□□□□□ -1.85
SMCHD1-211ENST00000584897 AGERQ15109 404 aa3.49□□□□□ -1.85
SMCHD1-211ENST00000584897 DESI1Q6ICB0 168 aa3.49□□□□□ -1.85
SMCHD1-211ENST00000584897 EHBP1Q8NDI1 1231 aa3.49□□□□□ -1.85
SMCHD1-211ENST00000584897 VARSP26640 1264 aaKnown RBP3.49□□□□□ -1.85
SMCHD1-211ENST00000584897 SSTR3P32745 418 aaPredicted RBP3.49□□□□□ -1.85
SMCHD1-211ENST00000584897 CTHP32929 405 aa3.49□□□□□ -1.85
SMCHD1-211ENST00000584897 TUSC1Q2TAM9 212 aa3.49□□□□□ -1.85
SMCHD1-211ENST00000584897 DHX9Q08211 1270 aaKnown RBP3.49□□□□□ -1.85
SMCHD1-211ENST00000584897 PTPRNQ16849 979 aa3.49□□□□□ -1.85
SMCHD1-211ENST00000584897 DDRGK1Q96HY6 314 aa3.49□□□□□ -1.85
SMCHD1-211ENST00000584897 PGPEP1Q9NXJ5 209 aa3.49□□□□□ -1.85
SMCHD1-211ENST00000584897 CCNYL3P0C7X3 344 aa3.48□□□□□ -1.85
SMCHD1-211ENST00000584897 MMP16P51512 607 aa3.48□□□□□ -1.85
SMCHD1-211ENST00000584897 FCF1Q9Y324 198 aaKnown RBP3.48□□□□□ -1.85
SMCHD1-211ENST00000584897 SOCS7O14512 581 aa3.48□□□□□ -1.85
SMCHD1-211ENST00000584897 SMCPP49901 116 aaPredicted RBP3.48□□□□□ -1.85
SMCHD1-211ENST00000584897 NUDT12Q9BQG2 462 aa3.48□□□□□ -1.85
SMCHD1-211ENST00000584897 FUT2Q10981 343 aa3.48□□□□□ -1.85
SMCHD1-211ENST00000584897 MTMR2Q13614 643 aa3.48□□□□□ -1.85
SMCHD1-211ENST00000584897 KIF13AQ9H1H9 1805 aa3.48□□□□□ -1.85
SMCHD1-211ENST00000584897 BRPF1P55201 1214 aaPredicted RBP3.47□□□□□ -1.85
SMCHD1-211ENST00000584897 CCDC102AQ96A19 550 aa3.47□□□□□ -1.85
SMCHD1-211ENST00000584897 SLC27A5Q9Y2P5 690 aa3.47□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms