RNA–Protein interactions for RNA: ENST00000582352.1

SHMT1-208, Transcript of serine hydroxymethyltransferase 1, humanhuman

Gene SHMT1, Length 2,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-208ENST00000582352 UPF2Q9HAU5 1272 aaKnown RBP15.65■□□□□ 0.1
SHMT1-208ENST00000582352 FANCAO15360 1455 aa15.65■□□□□ 0.1
SHMT1-208ENST00000582352 IQSEC2Q5JU85 1478 aa15.64■□□□□ 0.09
SHMT1-208ENST00000582352 TNNT2P45379 298 aaPredicted RBP15.64■□□□□ 0.09
SHMT1-208ENST00000582352 RARSP54136 660 aaKnown RBP15.64■□□□□ 0.09
SHMT1-208ENST00000582352 NLRP1Q9C000 1473 aa15.64■□□□□ 0.09
SHMT1-208ENST00000582352 NRXN1Q9ULB1 1477 aa15.64■□□□□ 0.09
SHMT1-208ENST00000582352 SEC24BO95487 1268 aa15.64■□□□□ 0.09
SHMT1-208ENST00000582352 RRP7AQ9Y3A4 280 aaKnown RBP15.64■□□□□ 0.09
SHMT1-208ENST00000582352 ABCA9Q8IUA7 1624 aa15.63■□□□□ 0.09
SHMT1-208ENST00000582352 SETBP1Q9Y6X0 1596 aa15.63■□□□□ 0.09
SHMT1-208ENST00000582352 ZMYM3Q14202 1370 aa15.62■□□□□ 0.09
SHMT1-208ENST00000582352 TCP11L2Q8N4U5 519 aa15.62■□□□□ 0.09
SHMT1-208ENST00000582352 QRICH2Q9H0J4 1663 aa15.62■□□□□ 0.09
SHMT1-208ENST00000582352 SLKQ9H2G2 1235 aaPredicted RBP15.61■□□□□ 0.09
SHMT1-208ENST00000582352 ADGRL1O94910 1474 aa15.61■□□□□ 0.09
SHMT1-208ENST00000582352 ZC3H13Q5T200 1668 aaKnown RBP15.61■□□□□ 0.09
SHMT1-208ENST00000582352 PPRC1Q5VV67 1664 aaKnown RBP15.61■□□□□ 0.09
SHMT1-208ENST00000582352 NOS1P29475 1434 aa15.61■□□□□ 0.09
SHMT1-208ENST00000582352 WDR63Q8IWG1 891 aa15.6■□□□□ 0.09
SHMT1-208ENST00000582352 CFAP53Q96M91 514 aa15.6■□□□□ 0.09
SHMT1-208ENST00000582352 ADGRB3O60242 1522 aa15.6■□□□□ 0.09
SHMT1-208ENST00000582352 USP32Q8NFA0 1604 aa15.6■□□□□ 0.09
SHMT1-208ENST00000582352 BCL2L13Q9BXK5 485 aa15.59■□□□□ 0.09
SHMT1-208ENST00000582352 RLBP1P12271 317 aa15.59■□□□□ 0.09
SHMT1-208ENST00000582352 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.59■□□□□ 0.09
SHMT1-208ENST00000582352 PCDHB15Q9Y5E8 787 aa15.59■□□□□ 0.09
SHMT1-208ENST00000582352 PHF23Q9BUL5 403 aaPredicted RBP15.58■□□□□ 0.09
SHMT1-208ENST00000582352 TRAK1Q9UPV9 953 aa15.58■□□□□ 0.09
SHMT1-208ENST00000582352 ZNF518AQ6AHZ1 1483 aa15.58■□□□□ 0.09
SHMT1-208ENST00000582352 CHGAP10645 457 aaKnown RBP15.58■□□□□ 0.08
SHMT1-208ENST00000582352 SLC12A5Q9H2X9 1139 aa15.58■□□□□ 0.08
SHMT1-208ENST00000582352 RWDD1Q9H446 243 aaPredicted RBP15.58■□□□□ 0.08
SHMT1-208ENST00000582352 MYH16Q9H6N6 1097 aa15.58■□□□□ 0.08
SHMT1-208ENST00000582352 CCDC27Q2M243 656 aa15.57■□□□□ 0.08
SHMT1-208ENST00000582352 TBC1D32Q96NH3 1257 aa15.57■□□□□ 0.08
SHMT1-208ENST00000582352 PDZRN3Q9UPQ7 1066 aa15.57■□□□□ 0.08
SHMT1-208ENST00000582352 POGKQ9P215 609 aa15.57■□□□□ 0.08
SHMT1-208ENST00000582352 MTHFSP49914 203 aa15.56■□□□□ 0.08
SHMT1-208ENST00000582352 TNNQ9UQP3 1299 aa15.56■□□□□ 0.08
SHMT1-208ENST00000582352 LMTK2Q8IWU2 1503 aa15.55■□□□□ 0.08
SHMT1-208ENST00000582352 PPLO60437 1756 aa15.55■□□□□ 0.08
SHMT1-208ENST00000582352 FTSJ3Q8IY81 847 aaKnown RBP15.54■□□□□ 0.08
SHMT1-208ENST00000582352 ADGRB1O14514 1584 aa15.54■□□□□ 0.08
SHMT1-208ENST00000582352 MVPQ14764 893 aaKnown RBP15.53■□□□□ 0.08
SHMT1-208ENST00000582352 ANTXR1Q9H6X2 564 aa15.53■□□□□ 0.08
SHMT1-208ENST00000582352 FAM43AQ8N2R8 423 aa15.53■□□□□ 0.08
SHMT1-208ENST00000582352 KIDINS220Q9ULH0 1771 aa15.53■□□□□ 0.08
SHMT1-208ENST00000582352 TBC1D2Q9BYX2 928 aa15.53■□□□□ 0.08
SHMT1-208ENST00000582352 U2AF1L5P0DN76 240 aaPredicted RBP15.52■□□□□ 0.08
SHMT1-208ENST00000582352 U2AF1Q01081 240 aaKnown RBP eCLIP15.52■□□□□ 0.08
SHMT1-208ENST00000582352 ZKSCAN2Q63HK3 967 aa15.52■□□□□ 0.08
SHMT1-208ENST00000582352 C14orf93Q9H972 538 aaKnown RBP15.52■□□□□ 0.08
SHMT1-208ENST00000582352 NSD2O96028 1365 aa15.52■□□□□ 0.07
SHMT1-208ENST00000582352 ADGRB2O60241 1585 aa15.51■□□□□ 0.07
SHMT1-208ENST00000582352 L1TD1Q5T7N2 865 aaKnown RBP15.51■□□□□ 0.07
SHMT1-208ENST00000582352 PRKCSHP14314 528 aaPredicted RBP15.51■□□□□ 0.07
SHMT1-208ENST00000582352 NCBP3Q53F19 620 aaKnown RBP15.51■□□□□ 0.07
SHMT1-208ENST00000582352 TMEM132EQ6IEE7 984 aa15.5■□□□□ 0.07
SHMT1-208ENST00000582352 DZIP1LQ8IYY4 767 aaKnown RBP15.5■□□□□ 0.07
SHMT1-208ENST00000582352 ANKRD36BQ8N2N9 1353 aa15.5■□□□□ 0.07
SHMT1-208ENST00000582352 CT47B1P0C2W7 299 aaPredicted RBP15.49■□□□□ 0.07
SHMT1-208ENST00000582352 GLI2P10070 1586 aa15.49■□□□□ 0.07
SHMT1-208ENST00000582352 EVC2Q86UK5 1308 aa15.49■□□□□ 0.07
SHMT1-208ENST00000582352 CFAP65Q6ZU64 1925 aaKnown RBP15.49■□□□□ 0.07
SHMT1-208ENST00000582352 NPATQ14207 1427 aa15.49■□□□□ 0.07
SHMT1-208ENST00000582352 SMC4Q9NTJ3 1288 aa15.48■□□□□ 0.07
SHMT1-208ENST00000582352 RPGRIP1LQ68CZ1 1315 aa15.47■□□□□ 0.07
SHMT1-208ENST00000582352 TSR2Q969E8 191 aaKnown RBP15.47■□□□□ 0.07
SHMT1-208ENST00000582352 TULP4Q9NRJ4 1543 aa15.47■□□□□ 0.07
SHMT1-208ENST00000582352 ARHGEF28Q8N1W1 1705 aaKnown RBP15.46■□□□□ 0.07
SHMT1-208ENST00000582352 C22orf23Q9BZE7 217 aa15.46■□□□□ 0.07
SHMT1-208ENST00000582352 MFAP1P55081 439 aaKnown RBP15.46■□□□□ 0.06
SHMT1-208ENST00000582352 ITPRIPQ8IWB1 547 aa15.45■□□□□ 0.06
SHMT1-208ENST00000582352 SPRYD3Q8NCJ5 442 aa15.45■□□□□ 0.06
SHMT1-208ENST00000582352 PUS7Q96PZ0 661 aaKnown RBP15.45■□□□□ 0.06
SHMT1-208ENST00000582352 DDX19BQ9UMR2 479 aa15.45■□□□□ 0.06
SHMT1-208ENST00000582352 TRIM27P14373 513 aa15.44■□□□□ 0.06
SHMT1-208ENST00000582352 EIF5BO60841 1220 aaKnown RBP15.44■□□□□ 0.06
SHMT1-208ENST00000582352 HDAC1Q13547 482 aaPredicted RBP15.44■□□□□ 0.06
SHMT1-208ENST00000582352 HECW2Q9P2P5 1572 aa15.44■□□□□ 0.06
SHMT1-208ENST00000582352 U2SURPO15042 1029 aaKnown RBP15.43■□□□□ 0.06
SHMT1-208ENST00000582352 EXOSC9Q06265 439 aaKnown RBP15.43■□□□□ 0.06
SHMT1-208ENST00000582352 RSPH6AQ9H0K4 717 aa15.43■□□□□ 0.06
SHMT1-208ENST00000582352 ASXL2Q76L83 1435 aa15.43■□□□□ 0.06
SHMT1-208ENST00000582352 MCM4P33991 863 aa15.42■□□□□ 0.06
SHMT1-208ENST00000582352 GGT6Q6P531 493 aa15.42■□□□□ 0.06
SHMT1-208ENST00000582352 CHMP5Q9NZZ3 219 aa15.42■□□□□ 0.06
SHMT1-208ENST00000582352 ATF7IPQ6VMQ6 1270 aa15.42■□□□□ 0.06
SHMT1-208ENST00000582352 ABCC11Q96J66 1382 aa15.42■□□□□ 0.06
SHMT1-208ENST00000582352 GOLGA6L3A6NEY3 463 aa15.41■□□□□ 0.06
SHMT1-208ENST00000582352 SSH1Q8WYL5 1049 aa15.41■□□□□ 0.06
SHMT1-208ENST00000582352 ARXQ96QS3 562 aa15.41■□□□□ 0.06
SHMT1-208ENST00000582352 CABP2Q9NPB3 220 aa15.41■□□□□ 0.06
SHMT1-208ENST00000582352 CD109Q6YHK3 1445 aa15.41■□□□□ 0.06
SHMT1-208ENST00000582352 HSCBQ8IWL3 235 aa15.41■□□□□ 0.06
SHMT1-208ENST00000582352 FRMPD1Q5SYB0 1578 aa15.41■□□□□ 0.06
SHMT1-208ENST00000582352 TMPOP42166 694 aaKnown RBP15.41■□□□□ 0.06
SHMT1-208ENST00000582352 CAMSAP1Q5T5Y3 1602 aa15.4■□□□□ 0.06
SHMT1-208ENST00000582352 A0A1W2PP64 1363 aa15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms