RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 ACIN1Q9UKV3 1341 aaKnown RBP20.38■□□□□ 0.85
CCDC40-216ENST00000576241 FNBP4Q8N3X1 1017 aaPredicted RBP20.38■□□□□ 0.85
CCDC40-216ENST00000576241 PTCH1Q13635 1447 aa20.37■□□□□ 0.85
CCDC40-216ENST00000576241 PPLO60437 1756 aa20.34■□□□□ 0.85
CCDC40-216ENST00000576241 RGL3Q3MIN7 710 aa20.34■□□□□ 0.85
CCDC40-216ENST00000576241 ROBO2Q9HCK4 1378 aa20.34■□□□□ 0.85
CCDC40-216ENST00000576241 DEFB132Q7Z7B7 95 aa20.33■□□□□ 0.85
CCDC40-216ENST00000576241 PRAG1Q86YV5 1406 aa20.33■□□□□ 0.84
CCDC40-216ENST00000576241 NALCNQ8IZF0 1738 aa20.33■□□□□ 0.84
CCDC40-216ENST00000576241 ANKRD30BQ9BXX2 1392 aa20.32■□□□□ 0.84
CCDC40-216ENST00000576241 BLMP54132 1417 aaPredicted RBP20.31■□□□□ 0.84
CCDC40-216ENST00000576241 SPATA31E1Q6ZUB1 1445 aa20.31■□□□□ 0.84
CCDC40-216ENST00000576241 ADGRF5Q8IZF2 1346 aa20.3■□□□□ 0.84
CCDC40-216ENST00000576241 C1orf167Q5SNV9 1468 aa20.28■□□□□ 0.84
CCDC40-216ENST00000576241 BCL9LQ86UU0 1499 aa20.28■□□□□ 0.84
CCDC40-216ENST00000576241 SOS2Q07890 1332 aaPredicted RBP20.27■□□□□ 0.84
CCDC40-216ENST00000576241 LAMC1P11047 1609 aa20.27■□□□□ 0.84
CCDC40-216ENST00000576241 GJD4Q96KN9 370 aaPredicted RBP20.27■□□□□ 0.84
CCDC40-216ENST00000576241 RAB3GAP2Q9H2M9 1393 aa20.24■□□□□ 0.83
CCDC40-216ENST00000576241 PSDA5PKW4 1024 aaPredicted RBP20.24■□□□□ 0.83
CCDC40-216ENST00000576241 STK26Q9P289 416 aa20.24■□□□□ 0.83
CCDC40-216ENST00000576241 COL22A1Q8NFW1 1626 aaPredicted RBP20.24■□□□□ 0.83
CCDC40-216ENST00000576241 PIK3C2GO75747 1445 aa20.23■□□□□ 0.83
CCDC40-216ENST00000576241 ORAI2Q96SN7 254 aa20.23■□□□□ 0.83
CCDC40-216ENST00000576241 SF3B2Q13435 895 aaKnown RBP20.22■□□□□ 0.83
CCDC40-216ENST00000576241 IFT172Q9UG01 1749 aa20.22■□□□□ 0.83
CCDC40-216ENST00000576241 LRPPRCP42704 1394 aaKnown RBP20.21■□□□□ 0.83
CCDC40-216ENST00000576241 HRCP23327 699 aa20.21■□□□□ 0.83
CCDC40-216ENST00000576241 MARF1Q9Y4F3 1742 aaKnown RBP20.21■□□□□ 0.83
CCDC40-216ENST00000576241 BRWD3Q6RI45 1802 aa20.2■□□□□ 0.82
CCDC40-216ENST00000576241 TECPR2O15040 1411 aa20.2■□□□□ 0.82
CCDC40-216ENST00000576241 MYOM2P54296 1465 aa20.2■□□□□ 0.82
CCDC40-216ENST00000576241 CDC42BPGQ6DT37 1551 aa20.2■□□□□ 0.82
CCDC40-216ENST00000576241 TMEM132EQ6IEE7 984 aa20.19■□□□□ 0.82
CCDC40-216ENST00000576241 ABCC11Q96J66 1382 aa20.19■□□□□ 0.82
CCDC40-216ENST00000576241 GLI3P10071 1580 aa20.18■□□□□ 0.82
CCDC40-216ENST00000576241 WAPLQ7Z5K2 1190 aa20.17■□□□□ 0.82
CCDC40-216ENST00000576241 RALGAPBQ86X10 1494 aa20.17■□□□□ 0.82
CCDC40-216ENST00000576241 ESCO1Q5FWF5 840 aa20.16■□□□□ 0.82
CCDC40-216ENST00000576241 YTHDC2Q9H6S0 1430 aaKnown RBP20.16■□□□□ 0.82
CCDC40-216ENST00000576241 TNKS1BP1Q9C0C2 1729 aaKnown RBP20.16■□□□□ 0.82
CCDC40-216ENST00000576241 NPHP3Q7Z494 1330 aa20.14■□□□□ 0.81
CCDC40-216ENST00000576241 C14orf93Q9H972 538 aaKnown RBP20.14■□□□□ 0.81
CCDC40-216ENST00000576241 KNDC1Q76NI1 1749 aa20.13■□□□□ 0.81
CCDC40-216ENST00000576241 NRXN1Q9ULB1 1477 aa20.13■□□□□ 0.81
CCDC40-216ENST00000576241 DHX57Q6P158 1386 aaKnown RBP20.12■□□□□ 0.81
CCDC40-216ENST00000576241 PLEKHH1Q9ULM0 1364 aa20.12■□□□□ 0.81
CCDC40-216ENST00000576241 YY1P25490 414 aa20.12■□□□□ 0.81
CCDC40-216ENST00000576241 UNC5CLQ8IV45 518 aa20.12■□□□□ 0.81
CCDC40-216ENST00000576241 NUTM2FA1L443 756 aa20.11■□□□□ 0.81
CCDC40-216ENST00000576241 CFAP70Q5T0N1 1121 aa20.11■□□□□ 0.81
CCDC40-216ENST00000576241 SEPT12Q8IYM1 358 aa20.11■□□□□ 0.81
CCDC40-216ENST00000576241 SIRT1Q96EB6 747 aa20.1■□□□□ 0.81
CCDC40-216ENST00000576241 FOXO3O43524 673 aa20.09■□□□□ 0.81
CCDC40-216ENST00000576241 SLIT2O94813 1529 aa20.08■□□□□ 0.81
CCDC40-216ENST00000576241 PXDNQ92626 1479 aa20.07■□□□□ 0.8
CCDC40-216ENST00000576241 BAG6P46379 1132 aa20.07■□□□□ 0.8
CCDC40-216ENST00000576241 XPCQ01831 940 aaPredicted RBP20.07■□□□□ 0.8
CCDC40-216ENST00000576241 KRT27Q7Z3Y8 459 aa20.06■□□□□ 0.8
CCDC40-216ENST00000576241 R3HDM1Q15032 1099 aaKnown RBP20.05■□□□□ 0.8
CCDC40-216ENST00000576241 PRAM1Q96QH2 718 aa20.05■□□□□ 0.8
CCDC40-216ENST00000576241 SAFB2Q14151 953 aaKnown RBP eCLIP20.04■□□□□ 0.8
CCDC40-216ENST00000576241 POGKQ9P215 609 aa20.04■□□□□ 0.8
CCDC40-216ENST00000576241 FMN2Q9NZ56 1722 aa20.04■□□□□ 0.8
CCDC40-216ENST00000576241 DCAF11Q8TEB1 546 aa20.03■□□□□ 0.8
CCDC40-216ENST00000576241 KDM2AQ9Y2K7 1162 aa20.03■□□□□ 0.8
CCDC40-216ENST00000576241 STAC3Q96MF2 364 aa20.02■□□□□ 0.8
CCDC40-216ENST00000576241 DLC1Q96QB1 1528 aa20.02■□□□□ 0.79
CCDC40-216ENST00000576241 KIF1AQ12756 1690 aa20.01■□□□□ 0.79
CCDC40-216ENST00000576241 ONECUT3O60422 494 aaPredicted RBP20.01■□□□□ 0.79
CCDC40-216ENST00000576241 EN1Q05925 392 aaPredicted RBP20.01■□□□□ 0.79
CCDC40-216ENST00000576241 VPS72Q15906 364 aa19.99■□□□□ 0.79
CCDC40-216ENST00000576241 PHF8Q9UPP1 1060 aa19.99■□□□□ 0.79
CCDC40-216ENST00000576241 ADGRB1O14514 1584 aa19.99■□□□□ 0.79
CCDC40-216ENST00000576241 KRT28Q7Z3Y7 464 aa19.98■□□□□ 0.79
CCDC40-216ENST00000576241 TRAK1Q9UPV9 953 aa19.98■□□□□ 0.79
CCDC40-216ENST00000576241 CCDC9Q9Y3X0 531 aaKnown RBP19.98■□□□□ 0.79
CCDC40-216ENST00000576241 USP32Q8NFA0 1604 aa19.97■□□□□ 0.79
CCDC40-216ENST00000576241 SPATA31A3Q5VYP0 1347 aa19.97■□□□□ 0.79
CCDC40-216ENST00000576241 PSME1Q06323 249 aa19.96■□□□□ 0.79
CCDC40-216ENST00000576241 ANKARQ7Z5J8 1434 aa19.95■□□□□ 0.78
CCDC40-216ENST00000576241 A0A0G2JS52 829 aa19.94■□□□□ 0.78
CCDC40-216ENST00000576241 MYT1Q01538 1121 aa19.94■□□□□ 0.78
CCDC40-216ENST00000576241 ADGRB2O60241 1585 aa19.94■□□□□ 0.78
CCDC40-216ENST00000576241 EIF3AQ14152 1382 aaKnown RBP19.94■□□□□ 0.78
CCDC40-216ENST00000576241 RGPD1P0DJD0 1748 aa19.93■□□□□ 0.78
CCDC40-216ENST00000576241 HAP1P54257 671 aaPredicted RBP19.93■□□□□ 0.78
CCDC40-216ENST00000576241 HIRIP3Q9BW71 556 aaPredicted RBP19.93■□□□□ 0.78
CCDC40-216ENST00000576241 PLCH1Q4KWH8 1693 aa19.93■□□□□ 0.78
CCDC40-216ENST00000576241 TNS3Q68CZ2 1445 aa19.93■□□□□ 0.78
CCDC40-216ENST00000576241 MINK1Q8N4C8 1332 aaPredicted RBP19.92■□□□□ 0.78
CCDC40-216ENST00000576241 NWD2Q9ULI1 1742 aa19.91■□□□□ 0.78
CCDC40-216ENST00000576241 SBNO1A3KN83 1393 aa19.91■□□□□ 0.78
CCDC40-216ENST00000576241 LMOD2Q6P5Q4 547 aa19.9■□□□□ 0.78
CCDC40-216ENST00000576241 PMFBP1Q8TBY8 1022 aa19.9■□□□□ 0.78
CCDC40-216ENST00000576241 RGPD8O14715 1765 aaPredicted RBP19.89■□□□□ 0.77
CCDC40-216ENST00000576241 ARHGEF10O15013 1369 aa19.89■□□□□ 0.77
CCDC40-216ENST00000576241 EZH2Q15910 746 aaKnown RBP19.89■□□□□ 0.77
CCDC40-216ENST00000576241 FAM182BQ5T319 152 aa19.89■□□□□ 0.77
CCDC40-216ENST00000576241 PLEKHG5O94827 1062 aa19.88■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms