RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 ADGRB2O60241 1585 aa24.13■■□□□ 1.45
NUP88-210ENST00000574867 CDC42BPGQ6DT37 1551 aa24.11■■□□□ 1.45
NUP88-210ENST00000574867 DCCP43146 1447 aa24.11■■□□□ 1.45
NUP88-210ENST00000574867 C14orf37Q86TY3 774 aa24.11■■□□□ 1.45
NUP88-210ENST00000574867 MSH6P52701 1360 aa24.11■■□□□ 1.45
NUP88-210ENST00000574867 RBM33Q96EV2 1170 aaKnown RBP24.11■■□□□ 1.45
NUP88-210ENST00000574867 SBNO2Q9Y2G9 1366 aa24.1■■□□□ 1.45
NUP88-210ENST00000574867 SAFB2Q14151 953 aaKnown RBP eCLIP24.09■■□□□ 1.45
NUP88-210ENST00000574867 EIF4G2P78344 907 aaKnown RBP eCLIP24.08■■□□□ 1.45
NUP88-210ENST00000574867 CERKQ8TCT0 537 aa24.07■■□□□ 1.44
NUP88-210ENST00000574867 C19orf44Q9H6X5 657 aa24.07■■□□□ 1.44
NUP88-210ENST00000574867 ST20-MTHFSA0A0A6YYL1 179 aa24.04■■□□□ 1.44
NUP88-210ENST00000574867 MINK1Q8N4C8 1332 aaPredicted RBP24.04■■□□□ 1.44
NUP88-210ENST00000574867 FMN2Q9NZ56 1722 aa24.03■■□□□ 1.44
NUP88-210ENST00000574867 SLC24A1O60721 1099 aa24.03■■□□□ 1.44
NUP88-210ENST00000574867 CADPS2Q86UW7 1296 aa24.01■■□□□ 1.43
NUP88-210ENST00000574867 HSPA5P11021 654 aaKnown RBP24.01■■□□□ 1.43
NUP88-210ENST00000574867 ATF3P18847 181 aa24.01■■□□□ 1.43
NUP88-210ENST00000574867 TULP4Q9NRJ4 1543 aa24.01■■□□□ 1.43
NUP88-210ENST00000574867 HIRIP3Q9BW71 556 aaPredicted RBP24■■□□□ 1.43
NUP88-210ENST00000574867 TESK2Q96S53 571 aa23.99■■□□□ 1.43
NUP88-210ENST00000574867 WASLO00401 505 aaPredicted RBP23.98■■□□□ 1.43
NUP88-210ENST00000574867 EVC2Q86UK5 1308 aa23.98■■□□□ 1.43
NUP88-210ENST00000574867 MST1RQ04912 1400 aa23.96■■□□□ 1.43
NUP88-210ENST00000574867 ANKARQ7Z5J8 1434 aa23.95■■□□□ 1.43
NUP88-210ENST00000574867 USP32Q8NFA0 1604 aa23.93■■□□□ 1.42
NUP88-210ENST00000574867 TMF1P82094 1093 aa23.93■■□□□ 1.42
NUP88-210ENST00000574867 CDK19Q9BWU1 502 aa23.93■■□□□ 1.42
NUP88-210ENST00000574867 ITSN1Q15811 1721 aa23.93■■□□□ 1.42
NUP88-210ENST00000574867 TOM1O60784 492 aa23.92■■□□□ 1.42
NUP88-210ENST00000574867 ATP7BP35670 1465 aa23.92■■□□□ 1.42
NUP88-210ENST00000574867 C1orf167Q5SNV9 1468 aa23.91■■□□□ 1.42
NUP88-210ENST00000574867 SRPK2P78362 688 aaKnown RBP23.9■■□□□ 1.42
NUP88-210ENST00000574867 TOPAZ1Q8N9V7 1692 aa23.9■■□□□ 1.42
NUP88-210ENST00000574867 DISP3Q9P2K9 1392 aa23.9■■□□□ 1.42
NUP88-210ENST00000574867 SLAIN2Q9P270 581 aa23.89■■□□□ 1.41
NUP88-210ENST00000574867 UBAP1LF5GYI3 381 aa23.88■■□□□ 1.41
NUP88-210ENST00000574867 CDCA8Q53HL2 280 aa23.88■■□□□ 1.41
NUP88-210ENST00000574867 PUS7Q96PZ0 661 aaKnown RBP23.88■■□□□ 1.41
NUP88-210ENST00000574867 ATAD2Q6PL18 1390 aa23.88■■□□□ 1.41
NUP88-210ENST00000574867 RGPD8O14715 1765 aaPredicted RBP23.88■■□□□ 1.41
NUP88-210ENST00000574867 KIF1AQ12756 1690 aa23.86■■□□□ 1.41
NUP88-210ENST00000574867 CABP2Q9NPB3 220 aa23.86■■□□□ 1.41
NUP88-210ENST00000574867 NUTM2FA1L443 756 aa23.85■■□□□ 1.41
NUP88-210ENST00000574867 PRR36Q9H6K5 1346 aa23.85■■□□□ 1.41
NUP88-210ENST00000574867 NUDT16Q96DE0 195 aaKnown RBP23.85■■□□□ 1.41
NUP88-210ENST00000574867 ROBO1Q9Y6N7 1651 aa23.84■■□□□ 1.41
NUP88-210ENST00000574867 CCDC61Q9Y6R9 512 aa23.82■■□□□ 1.4
NUP88-210ENST00000574867 PPIP5K1Q6PFW1 1433 aa23.81■■□□□ 1.4
NUP88-210ENST00000574867 NINLQ9Y2I6 1382 aa23.81■■□□□ 1.4
NUP88-210ENST00000574867 ESCO1Q5FWF5 840 aa23.8■■□□□ 1.4
NUP88-210ENST00000574867 BRINP3Q76B58 766 aa23.79■■□□□ 1.4
NUP88-210ENST00000574867 ORAI2Q96SN7 254 aa23.79■■□□□ 1.4
NUP88-210ENST00000574867 MYOM1P52179 1685 aa23.77■■□□□ 1.4
NUP88-210ENST00000574867 PIP4K2BP78356 416 aa23.77■■□□□ 1.4
NUP88-210ENST00000574867 PHF8Q9UPP1 1060 aa23.77■■□□□ 1.4
NUP88-210ENST00000574867 NHSL1Q5SYE7 1610 aa23.77■■□□□ 1.4
NUP88-210ENST00000574867 SCAF1Q9H7N4 1312 aaKnown RBP23.76■■□□□ 1.39
NUP88-210ENST00000574867 AHDC1Q5TGY3 1603 aaPredicted RBP23.75■■□□□ 1.39
NUP88-210ENST00000574867 PLEKHG3A1L390 1219 aa23.75■■□□□ 1.39
NUP88-210ENST00000574867 KIF7Q2M1P5 1343 aa23.75■■□□□ 1.39
NUP88-210ENST00000574867 C11orf95C9JLR9 678 aaPredicted RBP23.74■■□□□ 1.39
NUP88-210ENST00000574867 POLR3AO14802 1390 aaPredicted RBP23.74■■□□□ 1.39
NUP88-210ENST00000574867 CCDC7Q96M83 1385 aa23.73■■□□□ 1.39
NUP88-210ENST00000574867 CABP1Q9NZU7 370 aa23.73■■□□□ 1.39
NUP88-210ENST00000574867 NPHP3Q7Z494 1330 aa23.72■■□□□ 1.39
NUP88-210ENST00000574867 AKAP12Q02952 1782 aa23.72■■□□□ 1.39
NUP88-210ENST00000574867 PMFBP1Q8TBY8 1022 aa23.72■■□□□ 1.39
NUP88-210ENST00000574867 TMC1Q8TDI8 760 aa23.71■■□□□ 1.39
NUP88-210ENST00000574867 FBXO41Q8TF61 875 aa23.71■■□□□ 1.39
NUP88-210ENST00000574867 WASHC2AQ641Q2 1341 aa23.7■■□□□ 1.39
NUP88-210ENST00000574867 NGDNQ8NEJ9 315 aaKnown RBP23.7■■□□□ 1.38
NUP88-210ENST00000574867 POLR3GLQ9BT43 218 aa23.7■■□□□ 1.38
NUP88-210ENST00000574867 ACEP12821 1306 aa23.69■■□□□ 1.38
NUP88-210ENST00000574867 PHLPP1O60346 1717 aa23.69■■□□□ 1.38
NUP88-210ENST00000574867 CPSF1Q10570 1443 aaKnown RBP23.68■■□□□ 1.38
NUP88-210ENST00000574867 CD163L1Q9NR16 1453 aa23.68■■□□□ 1.38
NUP88-210ENST00000574867 MON2Q7Z3U7 1717 aa23.68■■□□□ 1.38
NUP88-210ENST00000574867 PXDNQ92626 1479 aa23.68■■□□□ 1.38
NUP88-210ENST00000574867 FOXO3O43524 673 aa23.68■■□□□ 1.38
NUP88-210ENST00000574867 SLC12A5Q9H2X9 1139 aa23.68■■□□□ 1.38
NUP88-210ENST00000574867 TERF2IPQ9NYB0 399 aa23.67■■□□□ 1.38
NUP88-210ENST00000574867 ANKRD36BQ8N2N9 1353 aa23.67■■□□□ 1.38
NUP88-210ENST00000574867 HDGFL2Q7Z4V5 671 aaPredicted RBP23.66■■□□□ 1.38
NUP88-210ENST00000574867 COL16A1Q07092 1604 aaPredicted RBP23.65■■□□□ 1.38
NUP88-210ENST00000574867 A0A1W2PP64 1363 aa23.65■■□□□ 1.38
NUP88-210ENST00000574867 BRD4O60885 1362 aaPredicted RBP23.65■■□□□ 1.38
NUP88-210ENST00000574867 ZNF692Q9BU19 519 aaPredicted RBP23.65■■□□□ 1.38
NUP88-210ENST00000574867 USP6P35125 1406 aa23.65■■□□□ 1.38
NUP88-210ENST00000574867 PSME1Q06323 249 aa23.64■■□□□ 1.38
NUP88-210ENST00000574867 TRPM3Q9HCF6 1732 aaPredicted RBP23.64■■□□□ 1.38
NUP88-210ENST00000574867 NRKQ7Z2Y5 1582 aa23.64■■□□□ 1.38
NUP88-210ENST00000574867 SOS2Q07890 1332 aaPredicted RBP23.64■■□□□ 1.37
NUP88-210ENST00000574867 KTN1Q86UP2 1357 aaKnown RBP23.63■■□□□ 1.37
NUP88-210ENST00000574867 DDX17Q92841 729 aaKnown RBP23.62■■□□□ 1.37
NUP88-210ENST00000574867 ZNF316A6NFI3 1004 aaPredicted RBP23.61■■□□□ 1.37
NUP88-210ENST00000574867 KRT28Q7Z3Y7 464 aa23.61■■□□□ 1.37
NUP88-210ENST00000574867 SBNO1A3KN83 1393 aa23.61■■□□□ 1.37
NUP88-210ENST00000574867 EDC4Q6P2E9 1401 aaKnown RBP23.6■■□□□ 1.37
NUP88-210ENST00000574867 XPCQ01831 940 aaPredicted RBP23.59■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms