RNA–Protein interactions for RNA: ENST00000571249.1

CHD3-213, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 330 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-213ENST00000571249 PIK3R4Q99570 1358 aa11.3□□□□□ -0.6
CHD3-213ENST00000571249 NPM3O75607 178 aaKnown RBP11.3□□□□□ -0.6
CHD3-213ENST00000571249 HDGFP51858 240 aaKnown RBP11.3□□□□□ -0.6
CHD3-213ENST00000571249 COL22A1Q8NFW1 1626 aaPredicted RBP11.3□□□□□ -0.6
CHD3-213ENST00000571249 DISP2A7MBM2 1401 aa11.29□□□□□ -0.6
CHD3-213ENST00000571249 FAM98CQ17RN3 349 aaKnown RBP11.29□□□□□ -0.6
CHD3-213ENST00000571249 SLC52A1Q9NWF4 448 aa11.29□□□□□ -0.6
CHD3-213ENST00000571249 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.29□□□□□ -0.6
CHD3-213ENST00000571249 EIF2AK4Q9P2K8 1649 aaKnown RBP11.28□□□□□ -0.6
CHD3-213ENST00000571249 TRIM37O94972 964 aa11.28□□□□□ -0.6
CHD3-213ENST00000571249 MARF1Q9Y4F3 1742 aaKnown RBP11.28□□□□□ -0.6
CHD3-213ENST00000571249 NOS1P29475 1434 aa11.27□□□□□ -0.6
CHD3-213ENST00000571249 FYCO1Q9BQS8 1478 aa11.27□□□□□ -0.6
CHD3-213ENST00000571249 APBA3O96018 575 aa11.27□□□□□ -0.61
CHD3-213ENST00000571249 COL13A1Q5TAT6 717 aaPredicted RBP11.27□□□□□ -0.61
CHD3-213ENST00000571249 LAMC1P11047 1609 aa11.27□□□□□ -0.61
CHD3-213ENST00000571249 EHBP1L1Q8N3D4 1523 aa11.26□□□□□ -0.61
CHD3-213ENST00000571249 CHGAP10645 457 aaKnown RBP11.26□□□□□ -0.61
CHD3-213ENST00000571249 NBPF8Q3BBV2 869 aa11.26□□□□□ -0.61
CHD3-213ENST00000571249 NBPF14Q5TI25 921 aa11.26□□□□□ -0.61
CHD3-213ENST00000571249 PDGFDQ9GZP0 370 aaPredicted RBP11.26□□□□□ -0.61
CHD3-213ENST00000571249 CHD4Q14839 1912 aa11.26□□□□□ -0.61
CHD3-213ENST00000571249 GOLGB1Q14789 3259 aaKnown RBP11.26□□□□□ -0.61
CHD3-213ENST00000571249 RGPD1P0DJD0 1748 aa11.26□□□□□ -0.61
CHD3-213ENST00000571249 MYO5BQ9ULV0 1848 aa11.25□□□□□ -0.61
CHD3-213ENST00000571249 ZBTB22O15209 634 aa11.25□□□□□ -0.61
CHD3-213ENST00000571249 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.25□□□□□ -0.61
CHD3-213ENST00000571249 SYT17Q9BSW7 474 aa11.25□□□□□ -0.61
CHD3-213ENST00000571249 PLEKHG5O94827 1062 aa11.24□□□□□ -0.61
CHD3-213ENST00000571249 TNS1Q9HBL0 1735 aaKnown RBP11.23□□□□□ -0.61
CHD3-213ENST00000571249 FOXO3O43524 673 aa11.23□□□□□ -0.61
CHD3-213ENST00000571249 HSPA6P17066 643 aa11.23□□□□□ -0.61
CHD3-213ENST00000571249 PRELPP51888 382 aa11.23□□□□□ -0.61
CHD3-213ENST00000571249 FHDC1Q9C0D6 1143 aaPredicted RBP11.23□□□□□ -0.61
CHD3-213ENST00000571249 ARHGEF5Q12774 1597 aa11.23□□□□□ -0.61
CHD3-213ENST00000571249 ZBTB7AO95365 584 aa11.22□□□□□ -0.61
CHD3-213ENST00000571249 PTGER2P43116 358 aa11.22□□□□□ -0.61
CHD3-213ENST00000571249 METP08581 1390 aa11.21□□□□□ -0.61
CHD3-213ENST00000571249 CABLES1Q8TDN4 633 aa11.21□□□□□ -0.61
CHD3-213ENST00000571249 RRP7BPQ9NSQ0 103 aa11.21□□□□□ -0.61
CHD3-213ENST00000571249 NRKQ7Z2Y5 1582 aa11.2□□□□□ -0.62
CHD3-213ENST00000571249 PXDNQ92626 1479 aa11.2□□□□□ -0.62
CHD3-213ENST00000571249 FAM83GA6ND36 823 aa11.2□□□□□ -0.62
CHD3-213ENST00000571249 ESCO1Q5FWF5 840 aa11.2□□□□□ -0.62
CHD3-213ENST00000571249 PCDH10Q9P2E7 1040 aa11.2□□□□□ -0.62
CHD3-213ENST00000571249 ATF5Q9Y2D1 282 aaPredicted RBP11.2□□□□□ -0.62
CHD3-213ENST00000571249 NALCNQ8IZF0 1738 aa11.2□□□□□ -0.62
CHD3-213ENST00000571249 XRN1Q8IZH2 1706 aaKnown RBP11.2□□□□□ -0.62
CHD3-213ENST00000571249 TMEM131LA2VDJ0 1609 aa11.2□□□□□ -0.62
CHD3-213ENST00000571249 DUOX2Q9NRD8 1548 aa11.19□□□□□ -0.62
CHD3-213ENST00000571249 CEP162Q5TB80 1403 aa11.19□□□□□ -0.62
CHD3-213ENST00000571249 KANK1Q14678 1352 aa11.19□□□□□ -0.62
CHD3-213ENST00000571249 NPHP3Q7Z494 1330 aa11.18□□□□□ -0.62
CHD3-213ENST00000571249 RPRD2Q5VT52 1461 aaKnown RBP11.18□□□□□ -0.62
CHD3-213ENST00000571249 NUP188Q5SRE5 1749 aa11.18□□□□□ -0.62
CHD3-213ENST00000571249 MYOM1P52179 1685 aa11.17□□□□□ -0.62
CHD3-213ENST00000571249 GCC2Q8IWJ2 1684 aa11.17□□□□□ -0.62
CHD3-213ENST00000571249 PARD3Q8TEW0 1356 aa11.17□□□□□ -0.62
CHD3-213ENST00000571249 KIF15Q9NS87 1388 aa11.16□□□□□ -0.62
CHD3-213ENST00000571249 LMTK2Q8IWU2 1503 aa11.16□□□□□ -0.62
CHD3-213ENST00000571249 FAM196AQ6ZSG2 479 aa11.16□□□□□ -0.62
CHD3-213ENST00000571249 TNS4Q8IZW8 715 aa11.16□□□□□ -0.62
CHD3-213ENST00000571249 RREB1Q92766 1687 aa11.16□□□□□ -0.62
CHD3-213ENST00000571249 SHANK3Q9BYB0 1731 aa11.15□□□□□ -0.62
CHD3-213ENST00000571249 GPR162Q16538 588 aa11.15□□□□□ -0.62
CHD3-213ENST00000571249 ANO8Q9HCE9 1232 aaPredicted RBP11.15□□□□□ -0.62
CHD3-213ENST00000571249 USP32Q8NFA0 1604 aa11.15□□□□□ -0.62
CHD3-213ENST00000571249 PCNTO95613 3336 aa11.14□□□□□ -0.63
CHD3-213ENST00000571249 SPATA31A3Q5VYP0 1347 aa11.14□□□□□ -0.63
CHD3-213ENST00000571249 HAP1P54257 671 aaPredicted RBP11.14□□□□□ -0.63
CHD3-213ENST00000571249 DNAJC5GQ8N7S2 189 aa11.14□□□□□ -0.63
CHD3-213ENST00000571249 ADGRL2O95490 1459 aa11.13□□□□□ -0.63
CHD3-213ENST00000571249 ADGRB2O60241 1585 aa11.13□□□□□ -0.63
CHD3-213ENST00000571249 ERBINQ96RT1 1412 aa11.13□□□□□ -0.63
CHD3-213ENST00000571249 NRXN3Q9Y4C0 1643 aa11.13□□□□□ -0.63
CHD3-213ENST00000571249 PLCH1Q4KWH8 1693 aa11.12□□□□□ -0.63
CHD3-213ENST00000571249 NUTM2FA1L443 756 aa11.12□□□□□ -0.63
CHD3-213ENST00000571249 BTG4Q9NY30 223 aa11.12□□□□□ -0.63
CHD3-213ENST00000571249 SPATA31A5Q5VU36 1347 aa11.1□□□□□ -0.63
CHD3-213ENST00000571249 SPATA31A7Q8IWB4 1347 aa11.1□□□□□ -0.63
CHD3-213ENST00000571249 ROBO2Q9HCK4 1378 aa11.1□□□□□ -0.63
CHD3-213ENST00000571249 PTPN23Q9H3S7 1636 aa11.09□□□□□ -0.63
CHD3-213ENST00000571249 NWD2Q9ULI1 1742 aa11.09□□□□□ -0.63
CHD3-213ENST00000571249 CASZ1Q86V15 1759 aa11.09□□□□□ -0.63
CHD3-213ENST00000571249 PELP1Q8IZL8 1130 aaKnown RBP11.09□□□□□ -0.63
CHD3-213ENST00000571249 SGIP1Q9BQI5 828 aa11.09□□□□□ -0.63
CHD3-213ENST00000571249 PIAS4Q8N2W9 510 aaPredicted RBP11.08□□□□□ -0.64
CHD3-213ENST00000571249 KRT28Q7Z3Y7 464 aa11.07□□□□□ -0.64
CHD3-213ENST00000571249 FOXD4L1Q9NU39 408 aa11.07□□□□□ -0.64
CHD3-213ENST00000571249 DLC1Q96QB1 1528 aa11.07□□□□□ -0.64
CHD3-213ENST00000571249 ATP10DQ9P241 1426 aa11.07□□□□□ -0.64
CHD3-213ENST00000571249 THSD7AQ9UPZ6 1657 aa11.06□□□□□ -0.64
CHD3-213ENST00000571249 LMOD2Q6P5Q4 547 aa11.06□□□□□ -0.64
CHD3-213ENST00000571249 ZNF526Q8TF50 670 aaPredicted RBP11.06□□□□□ -0.64
CHD3-213ENST00000571249 GPBP1L1Q9HC44 474 aaPredicted RBP11.06□□□□□ -0.64
CHD3-213ENST00000571249 LRPPRCP42704 1394 aaKnown RBP11.05□□□□□ -0.64
CHD3-213ENST00000571249 ARXQ96QS3 562 aa11.05□□□□□ -0.64
CHD3-213ENST00000571249 NRAPQ86VF7 1730 aa11.04□□□□□ -0.64
CHD3-213ENST00000571249 PROM2Q8N271 834 aa11.04□□□□□ -0.64
CHD3-213ENST00000571249 BCL11BQ9C0K0 894 aaPredicted RBP11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms