RNA–Protein interactions for RNA: ENST00000570937.1

NUP88-202, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 361 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-202ENST00000570937 RSPH6AQ9H0K4 717 aa9.2□□□□□ -0.94
NUP88-202ENST00000570937 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.2□□□□□ -0.94
NUP88-202ENST00000570937 PCDHGC3Q9UN70 934 aa9.2□□□□□ -0.94
NUP88-202ENST00000570937 PLEKHG3A1L390 1219 aa9.19□□□□□ -0.94
NUP88-202ENST00000570937 TUSC1Q2TAM9 212 aa9.19□□□□□ -0.94
NUP88-202ENST00000570937 FAM160A2Q8N612 972 aaPredicted RBP9.19□□□□□ -0.94
NUP88-202ENST00000570937 SLC6A16Q9GZN6 736 aa9.19□□□□□ -0.94
NUP88-202ENST00000570937 RIC3Q7Z5B4 369 aa9.18□□□□□ -0.94
NUP88-202ENST00000570937 S1PR4O95977 384 aa9.17□□□□□ -0.94
NUP88-202ENST00000570937 USB1Q9BQ65 265 aaKnown RBP9.17□□□□□ -0.94
NUP88-202ENST00000570937 SH3D19Q5HYK7 790 aa9.16□□□□□ -0.94
NUP88-202ENST00000570937 RETREG3Q86VR2 466 aa9.16□□□□□ -0.94
NUP88-202ENST00000570937 RNF223E7ERA6 249 aa9.15□□□□□ -0.94
NUP88-202ENST00000570937 PRPF38BQ5VTL8 546 aaKnown RBP9.15□□□□□ -0.94
NUP88-202ENST00000570937 LIMD1Q9UGP4 676 aa9.15□□□□□ -0.94
NUP88-202ENST00000570937 SPDYE5A6NIY4 337 aa9.14□□□□□ -0.95
NUP88-202ENST00000570937 MMP16P51512 607 aa9.14□□□□□ -0.95
NUP88-202ENST00000570937 MTMR2Q13614 643 aa9.14□□□□□ -0.95
NUP88-202ENST00000570937 SKIV2LQ15477 1246 aaKnown RBP9.14□□□□□ -0.95
NUP88-202ENST00000570937 ANKLE1Q8NAG6 615 aa9.14□□□□□ -0.95
NUP88-202ENST00000570937 SYMPKQ92797 1274 aaKnown RBP9.14□□□□□ -0.95
NUP88-202ENST00000570937 PCDHB15Q9Y5E8 787 aa9.14□□□□□ -0.95
NUP88-202ENST00000570937 C6orf229H3BNL8 230 aa9.13□□□□□ -0.95
NUP88-202ENST00000570937 CLK2P49760 499 aaKnown RBP9.13□□□□□ -0.95
NUP88-202ENST00000570937 GOPCQ9HD26 462 aa9.13□□□□□ -0.95
NUP88-202ENST00000570937 DXOO77932 396 aaKnown RBP9.12□□□□□ -0.95
NUP88-202ENST00000570937 ZBTB3Q9H5J0 574 aa9.12□□□□□ -0.95
NUP88-202ENST00000570937 PRDM9Q9NQV7 894 aa9.12□□□□□ -0.95
NUP88-202ENST00000570937 LILRB3O75022 631 aa9.11□□□□□ -0.95
NUP88-202ENST00000570937 HRCP23327 699 aa9.11□□□□□ -0.95
NUP88-202ENST00000570937 POLR3EQ9NVU0 708 aa9.11□□□□□ -0.95
NUP88-202ENST00000570937 PPEF1O14829 653 aaPredicted RBP9.1□□□□□ -0.95
NUP88-202ENST00000570937 DESI1Q6ICB0 168 aa9.1□□□□□ -0.95
NUP88-202ENST00000570937 IL27Q8NEV9 243 aa9.1□□□□□ -0.95
NUP88-202ENST00000570937 JUNDP17535 347 aa9.09□□□□□ -0.95
NUP88-202ENST00000570937 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.09□□□□□ -0.95
NUP88-202ENST00000570937 V9GY48 417 aaPredicted RBP9.09□□□□□ -0.95
NUP88-202ENST00000570937 QPCTQ16769 361 aa9.08□□□□□ -0.96
NUP88-202ENST00000570937 PRR7Q8TB68 274 aa9.08□□□□□ -0.96
NUP88-202ENST00000570937 CSPP1Q1MSJ5 1256 aa9.07□□□□□ -0.96
NUP88-202ENST00000570937 CABLES1Q8TDN4 633 aa9.07□□□□□ -0.96
NUP88-202ENST00000570937 EMID1Q96A84 441 aaPredicted RBP9.07□□□□□ -0.96
NUP88-202ENST00000570937 IRX2Q9BZI1 471 aaPredicted RBP9.07□□□□□ -0.96
NUP88-202ENST00000570937 FCF1Q9Y324 198 aaKnown RBP9.07□□□□□ -0.96
NUP88-202ENST00000570937 CFAP99D6REC4 459 aa9.06□□□□□ -0.96
NUP88-202ENST00000570937 PLA2G2CQ5R387 149 aa9.06□□□□□ -0.96
NUP88-202ENST00000570937 PRKD2Q9BZL6 878 aa9.06□□□□□ -0.96
NUP88-202ENST00000570937 PPP2R2DQ66LE6 453 aa9.05□□□□□ -0.96
NUP88-202ENST00000570937 PROCA1Q8NCQ7 364 aaPredicted RBP9.05□□□□□ -0.96
NUP88-202ENST00000570937 NUTM2BA6NNL0 878 aaPredicted RBP9.04□□□□□ -0.96
NUP88-202ENST00000570937 NUTM2EB1AL46 878 aaPredicted RBP9.04□□□□□ -0.96
NUP88-202ENST00000570937 PTPRNQ16849 979 aa9.04□□□□□ -0.96
NUP88-202ENST00000570937 RTL5Q5HYW3 569 aaPredicted RBP9.04□□□□□ -0.96
NUP88-202ENST00000570937 NUTM2DQ5VT03 806 aaPredicted RBP9.04□□□□□ -0.96
NUP88-202ENST00000570937 NUTM2AQ8IVF1 878 aaPredicted RBP9.04□□□□□ -0.96
NUP88-202ENST00000570937 SLC19A1P41440 591 aa9.03□□□□□ -0.96
NUP88-202ENST00000570937 RPIAP49247 311 aa9.03□□□□□ -0.96
NUP88-202ENST00000570937 LIAT1Q6ZQX7 453 aa9.03□□□□□ -0.96
NUP88-202ENST00000570937 PCMTD1Q96MG8 357 aaPredicted RBP9.03□□□□□ -0.96
NUP88-202ENST00000570937 LYPD8Q6UX82 237 aa9.02□□□□□ -0.97
NUP88-202ENST00000570937 NUDT12Q9BQG2 462 aa9.02□□□□□ -0.97
NUP88-202ENST00000570937 FBXO31Q5XUX0 539 aaPredicted RBP9.01□□□□□ -0.97
NUP88-202ENST00000570937 CCNYL3P0C7X3 344 aa9□□□□□ -0.97
NUP88-202ENST00000570937 SPRYD7Q5W111 196 aa9□□□□□ -0.97
NUP88-202ENST00000570937 EVA1BQ9NVM1 165 aa9□□□□□ -0.97
NUP88-202ENST00000570937 HELBQ8NG08 1087 aaPredicted RBP8.99□□□□□ -0.97
NUP88-202ENST00000570937 ZBTB24O43167 697 aaPredicted RBP8.98□□□□□ -0.97
NUP88-202ENST00000570937 ZNF598Q86UK7 904 aaKnown RBP8.98□□□□□ -0.97
NUP88-202ENST00000570937 CCDC24Q8N4L8 307 aa8.98□□□□□ -0.97
NUP88-202ENST00000570937 CD2BP2O95400 341 aaKnown RBP8.97□□□□□ -0.97
NUP88-202ENST00000570937 KCNH2Q12809 1159 aa8.97□□□□□ -0.97
NUP88-202ENST00000570937 ATP1B4Q9UN42 357 aaPredicted RBP8.97□□□□□ -0.97
NUP88-202ENST00000570937 PER1O15534 1290 aaPredicted RBP8.96□□□□□ -0.98
NUP88-202ENST00000570937 F12P00748 615 aaPredicted RBP8.96□□□□□ -0.98
NUP88-202ENST00000570937 RFC5P40937 340 aa8.96□□□□□ -0.98
NUP88-202ENST00000570937 PTCRAQ6ISU1 281 aaPredicted RBP8.96□□□□□ -0.98
NUP88-202ENST00000570937 ZNF697Q5TEC3 545 aa8.95□□□□□ -0.98
NUP88-202ENST00000570937 TSC1Q92574 1164 aa8.95□□□□□ -0.98
NUP88-202ENST00000570937 CTDSPL2Q05D32 466 aa8.94□□□□□ -0.98
NUP88-202ENST00000570937 TRIM32Q13049 653 aa8.94□□□□□ -0.98
NUP88-202ENST00000570937 UNC93B1Q9H1C4 597 aa8.93□□□□□ -0.98
NUP88-202ENST00000570937 TMEM259Q4ZIN3 620 aa8.92□□□□□ -0.98
NUP88-202ENST00000570937 TRIM67Q6ZTA4 783 aa8.92□□□□□ -0.98
NUP88-202ENST00000570937 GFRA3O60609 400 aa8.91□□□□□ -0.98
NUP88-202ENST00000570937 WNT7BP56706 349 aa8.91□□□□□ -0.98
NUP88-202ENST00000570937 PRR20EP86478 221 aa8.91□□□□□ -0.98
NUP88-202ENST00000570937 PRR20CP86479 221 aa8.91□□□□□ -0.98
NUP88-202ENST00000570937 PRR20DP86480 221 aa8.91□□□□□ -0.98
NUP88-202ENST00000570937 PRR20BP86481 221 aa8.91□□□□□ -0.98
NUP88-202ENST00000570937 PRR20AP86496 221 aa8.91□□□□□ -0.98
NUP88-202ENST00000570937 MAP10Q9P2G4 905 aa8.91□□□□□ -0.98
NUP88-202ENST00000570937 GDF9O60383 454 aa8.9□□□□□ -0.98
NUP88-202ENST00000570937 AP1G2O75843 785 aa8.9□□□□□ -0.98
NUP88-202ENST00000570937 CTHP32929 405 aa8.9□□□□□ -0.98
NUP88-202ENST00000570937 USP17L8P0C7I0 530 aa8.89□□□□□ -0.99
NUP88-202ENST00000570937 LAPTM4AQ15012 233 aa8.89□□□□□ -0.99
NUP88-202ENST00000570937 LRRN4Q8WUT4 740 aa8.89□□□□□ -0.99
NUP88-202ENST00000570937 PKD2L1Q9P0L9 805 aa8.89□□□□□ -0.99
NUP88-202ENST00000570937 WNT7AO00755 349 aa8.88□□□□□ -0.99
NUP88-202ENST00000570937 SKOR1P84550 965 aa8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms