RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 FOXO3O43524 673 aa16.96■□□□□ 0.31
VPS53-207ENST00000570510 LRPPRCP42704 1394 aaKnown RBP16.95■□□□□ 0.3
VPS53-207ENST00000570510 A0A0G2JS52 829 aa16.95■□□□□ 0.3
VPS53-207ENST00000570510 PSDA5PKW4 1024 aaPredicted RBP16.95■□□□□ 0.3
VPS53-207ENST00000570510 VGFO15240 615 aaPredicted RBP16.95■□□□□ 0.3
VPS53-207ENST00000570510 MYT1Q01538 1121 aa16.95■□□□□ 0.3
VPS53-207ENST00000570510 ITGAEP38570 1179 aa16.94■□□□□ 0.3
VPS53-207ENST00000570510 BAG6P46379 1132 aa16.94■□□□□ 0.3
VPS53-207ENST00000570510 SEPT12Q8IYM1 358 aa16.94■□□□□ 0.3
VPS53-207ENST00000570510 IQGAP3Q86VI3 1631 aa16.94■□□□□ 0.3
VPS53-207ENST00000570510 MYOM2P54296 1465 aa16.93■□□□□ 0.3
VPS53-207ENST00000570510 ROBO2Q9HCK4 1378 aa16.93■□□□□ 0.3
VPS53-207ENST00000570510 LAMC1P11047 1609 aa16.92■□□□□ 0.3
VPS53-207ENST00000570510 RALGAPBQ86X10 1494 aa16.92■□□□□ 0.3
VPS53-207ENST00000570510 COL22A1Q8NFW1 1626 aaPredicted RBP16.92■□□□□ 0.3
VPS53-207ENST00000570510 KRT27Q7Z3Y8 459 aa16.91■□□□□ 0.3
VPS53-207ENST00000570510 ROCK1Q13464 1354 aa16.9■□□□□ 0.3
VPS53-207ENST00000570510 HFM1A2PYH4 1435 aa16.9■□□□□ 0.3
VPS53-207ENST00000570510 NUTM2FA1L443 756 aa16.9■□□□□ 0.3
VPS53-207ENST00000570510 HRCP23327 699 aa16.9■□□□□ 0.3
VPS53-207ENST00000570510 PLEKHG5O94827 1062 aa16.89■□□□□ 0.29
VPS53-207ENST00000570510 LRP5O75197 1615 aa16.88■□□□□ 0.29
VPS53-207ENST00000570510 VPS72Q15906 364 aa16.86■□□□□ 0.29
VPS53-207ENST00000570510 SPHKAPQ2M3C7 1700 aa16.86■□□□□ 0.29
VPS53-207ENST00000570510 PXDNQ92626 1479 aa16.86■□□□□ 0.29
VPS53-207ENST00000570510 NEXMIFQ5QGS0 1516 aa16.86■□□□□ 0.29
VPS53-207ENST00000570510 LMOD2Q6P5Q4 547 aa16.85■□□□□ 0.29
VPS53-207ENST00000570510 MARF1Q9Y4F3 1742 aaKnown RBP16.84■□□□□ 0.29
VPS53-207ENST00000570510 SLIT2O94813 1529 aa16.84■□□□□ 0.29
VPS53-207ENST00000570510 GLI3P10071 1580 aa16.84■□□□□ 0.29
VPS53-207ENST00000570510 YY1P25490 414 aa16.83■□□□□ 0.28
VPS53-207ENST00000570510 R3HDM1Q15032 1099 aaKnown RBP16.83■□□□□ 0.28
VPS53-207ENST00000570510 SPATA31A3Q5VYP0 1347 aa16.83■□□□□ 0.28
VPS53-207ENST00000570510 KRT28Q7Z3Y7 464 aa16.83■□□□□ 0.28
VPS53-207ENST00000570510 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.82■□□□□ 0.28
VPS53-207ENST00000570510 RPGRIP1LQ68CZ1 1315 aa16.82■□□□□ 0.28
VPS53-207ENST00000570510 PSME1Q06323 249 aa16.82■□□□□ 0.28
VPS53-207ENST00000570510 STK26Q9P289 416 aa16.82■□□□□ 0.28
VPS53-207ENST00000570510 EN1Q05925 392 aaPredicted RBP16.81■□□□□ 0.28
VPS53-207ENST00000570510 DCAF8L1A6NGE4 600 aa16.8■□□□□ 0.28
VPS53-207ENST00000570510 ONECUT3O60422 494 aaPredicted RBP16.8■□□□□ 0.28
VPS53-207ENST00000570510 CABLES1Q8TDN4 633 aa16.8■□□□□ 0.28
VPS53-207ENST00000570510 CCDC144AA2RUR9 1427 aa16.79■□□□□ 0.28
VPS53-207ENST00000570510 FAM98CQ17RN3 349 aaKnown RBP16.79■□□□□ 0.28
VPS53-207ENST00000570510 BRWD3Q6RI45 1802 aa16.79■□□□□ 0.28
VPS53-207ENST00000570510 NAIPQ13075 1403 aa16.79■□□□□ 0.28
VPS53-207ENST00000570510 CLTCL1P53675 1640 aa16.78■□□□□ 0.28
VPS53-207ENST00000570510 CDC42BPGQ6DT37 1551 aa16.78■□□□□ 0.28
VPS53-207ENST00000570510 WAPLQ7Z5K2 1190 aa16.78■□□□□ 0.28
VPS53-207ENST00000570510 KIF1BO60333 1816 aa16.77■□□□□ 0.28
VPS53-207ENST00000570510 PRAG1Q86YV5 1406 aa16.77■□□□□ 0.27
VPS53-207ENST00000570510 USP32Q8NFA0 1604 aa16.75■□□□□ 0.27
VPS53-207ENST00000570510 FAM83GA6ND36 823 aa16.73■□□□□ 0.27
VPS53-207ENST00000570510 FAM182BQ5T319 152 aa16.73■□□□□ 0.27
VPS53-207ENST00000570510 PHF8Q9UPP1 1060 aa16.73■□□□□ 0.27
VPS53-207ENST00000570510 TNS3Q68CZ2 1445 aa16.72■□□□□ 0.27
VPS53-207ENST00000570510 BTG4Q9NY30 223 aa16.72■□□□□ 0.27
VPS53-207ENST00000570510 PPP1R1BQ9UD71 204 aaPredicted RBP16.72■□□□□ 0.27
VPS53-207ENST00000570510 ARHGEF10O15013 1369 aa16.72■□□□□ 0.27
VPS53-207ENST00000570510 EZH2Q15910 746 aaKnown RBP16.71■□□□□ 0.27
VPS53-207ENST00000570510 TMEM132EQ6IEE7 984 aa16.69■□□□□ 0.26
VPS53-207ENST00000570510 KIF1AQ12756 1690 aa16.69■□□□□ 0.26
VPS53-207ENST00000570510 RGL3Q3MIN7 710 aa16.68■□□□□ 0.26
VPS53-207ENST00000570510 SLC4A1APQ9BWU0 796 aaKnown RBP16.68■□□□□ 0.26
VPS53-207ENST00000570510 NWD2Q9ULI1 1742 aa16.67■□□□□ 0.26
VPS53-207ENST00000570510 SBNO1A3KN83 1393 aa16.67■□□□□ 0.26
VPS53-207ENST00000570510 PLCH1Q4KWH8 1693 aa16.67■□□□□ 0.26
VPS53-207ENST00000570510 NBPF8Q3BBV2 869 aa16.67■□□□□ 0.26
VPS53-207ENST00000570510 NBPF14Q5TI25 921 aa16.67■□□□□ 0.26
VPS53-207ENST00000570510 ABCC11Q96J66 1382 aa16.66■□□□□ 0.26
VPS53-207ENST00000570510 PLEKHH1Q9ULM0 1364 aa16.66■□□□□ 0.26
VPS53-207ENST00000570510 TRIM37O94972 964 aa16.66■□□□□ 0.26
VPS53-207ENST00000570510 APBA3O96018 575 aa16.66■□□□□ 0.26
VPS53-207ENST00000570510 ADGRF5Q8IZF2 1346 aa16.66■□□□□ 0.26
VPS53-207ENST00000570510 RGPD1P0DJD0 1748 aa16.65■□□□□ 0.26
VPS53-207ENST00000570510 FAM196AQ6ZSG2 479 aa16.65■□□□□ 0.26
VPS53-207ENST00000570510 TECPR2O15040 1411 aa16.64■□□□□ 0.25
VPS53-207ENST00000570510 PMFBP1Q8TBY8 1022 aa16.64■□□□□ 0.25
VPS53-207ENST00000570510 SAFB2Q14151 953 aaKnown RBP eCLIP16.63■□□□□ 0.25
VPS53-207ENST00000570510 CAMKK2Q96RR4 588 aa16.63■□□□□ 0.25
VPS53-207ENST00000570510 DISP2A7MBM2 1401 aa16.62■□□□□ 0.25
VPS53-207ENST00000570510 RRBP1Q9P2E9 1410 aaKnown RBP16.62■□□□□ 0.25
VPS53-207ENST00000570510 PPARGC1BQ86YN6 1023 aaKnown RBP16.62■□□□□ 0.25
VPS53-207ENST00000570510 SPON1Q9HCB6 807 aa16.62■□□□□ 0.25
VPS53-207ENST00000570510 SPATA31A5Q5VU36 1347 aa16.62■□□□□ 0.25
VPS53-207ENST00000570510 SPATA31A7Q8IWB4 1347 aa16.62■□□□□ 0.25
VPS53-207ENST00000570510 FMN2Q9NZ56 1722 aa16.62■□□□□ 0.25
VPS53-207ENST00000570510 PPLO60437 1756 aa16.61■□□□□ 0.25
VPS53-207ENST00000570510 PRDM11Q9NQV5 511 aa16.61■□□□□ 0.25
VPS53-207ENST00000570510 GPRASP1Q5JY77 1395 aa16.61■□□□□ 0.25
VPS53-207ENST00000570510 PARD3Q8TEW0 1356 aa16.61■□□□□ 0.25
VPS53-207ENST00000570510 ANKRD30BQ9BXX2 1392 aa16.61■□□□□ 0.25
VPS53-207ENST00000570510 ADGRB2O60241 1585 aa16.6■□□□□ 0.25
VPS53-207ENST00000570510 PDE3BQ13370 1112 aa16.6■□□□□ 0.25
VPS53-207ENST00000570510 YTHDC2Q9H6S0 1430 aaKnown RBP16.6■□□□□ 0.25
VPS53-207ENST00000570510 PAK3O75914 559 aaPredicted RBP16.59■□□□□ 0.25
VPS53-207ENST00000570510 SIRT1Q96EB6 747 aa16.59■□□□□ 0.25
VPS53-207ENST00000570510 POGKQ9P215 609 aa16.59■□□□□ 0.25
VPS53-207ENST00000570510 NRXN1Q9ULB1 1477 aa16.59■□□□□ 0.25
VPS53-207ENST00000570510 STRN4Q9NRL3 753 aa16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 89.5 ms