RNA–Protein interactions for RNA: ENST00000569794.1

CHD9-220, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 5

Gene CHD9, Length 485 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-220ENST00000569794 KDM4AO75164 1064 aa12.95□□□□□ -0.34
CHD9-220ENST00000569794 AVPP01185 164 aa12.95□□□□□ -0.34
CHD9-220ENST00000569794 MMP16P51512 607 aa12.94□□□□□ -0.34
CHD9-220ENST00000569794 TULP1O00294 542 aaPredicted RBP12.93□□□□□ -0.34
CHD9-220ENST00000569794 MDM2Q00987 491 aaPredicted RBP12.93□□□□□ -0.34
CHD9-220ENST00000569794 MINK1Q8N4C8 1332 aaPredicted RBP12.92□□□□□ -0.34
CHD9-220ENST00000569794 USB1Q9BQ65 265 aaKnown RBP12.92□□□□□ -0.34
CHD9-220ENST00000569794 DXOO77932 396 aaKnown RBP12.9□□□□□ -0.34
CHD9-220ENST00000569794 USP46P62068 366 aa12.9□□□□□ -0.34
CHD9-220ENST00000569794 TRIM32Q13049 653 aa12.9□□□□□ -0.34
CHD9-220ENST00000569794 HLA-CQ95604 372 aa12.9□□□□□ -0.34
CHD9-220ENST00000569794 DACH1Q9UI36 760 aa12.9□□□□□ -0.34
CHD9-220ENST00000569794 WNT7AO00755 349 aa12.89□□□□□ -0.35
CHD9-220ENST00000569794 CTC1Q2NKJ3 1217 aa12.89□□□□□ -0.35
CHD9-220ENST00000569794 TTC24A2A3L6 582 aaPredicted RBP12.88□□□□□ -0.35
CHD9-220ENST00000569794 AXIN1O15169 862 aa12.88□□□□□ -0.35
CHD9-220ENST00000569794 CCDC102AQ96A19 550 aa12.88□□□□□ -0.35
CHD9-220ENST00000569794 HOXA2O43364 376 aa12.87□□□□□ -0.35
CHD9-220ENST00000569794 VSIG10Q8N0Z9 540 aa12.87□□□□□ -0.35
CHD9-220ENST00000569794 SMCPP49901 116 aaPredicted RBP12.86□□□□□ -0.35
CHD9-220ENST00000569794 SNIP1Q8TAD8 396 aaKnown RBP12.85□□□□□ -0.35
CHD9-220ENST00000569794 GPCPD1Q9NPB8 672 aa12.84□□□□□ -0.35
CHD9-220ENST00000569794 SMPD1P17405 629 aa12.83□□□□□ -0.36
CHD9-220ENST00000569794 CLCN1P35523 988 aa12.83□□□□□ -0.36
CHD9-220ENST00000569794 MRGPRX2Q96LB1 330 aa12.83□□□□□ -0.36
CHD9-220ENST00000569794 FAM217BQ9NTX9 383 aaPredicted RBP12.83□□□□□ -0.36
CHD9-220ENST00000569794 GMPR2Q9P2T1 348 aaKnown RBP12.83□□□□□ -0.36
CHD9-220ENST00000569794 GUCA2AQ02747 115 aa12.82□□□□□ -0.36
CHD9-220ENST00000569794 LCE2AQ5TA79 106 aaPredicted RBP12.81□□□□□ -0.36
CHD9-220ENST00000569794 TREML4Q6UXN2 200 aa12.81□□□□□ -0.36
CHD9-220ENST00000569794 CCDC24Q8N4L8 307 aa12.8□□□□□ -0.36
CHD9-220ENST00000569794 C11orf95C9JLR9 678 aaPredicted RBP12.79□□□□□ -0.36
CHD9-220ENST00000569794 J3QL48 77 aa12.78□□□□□ -0.36
CHD9-220ENST00000569794 REPIN1Q9BWE0 567 aaKnown RBP12.78□□□□□ -0.36
CHD9-220ENST00000569794 JUNDP17535 347 aa12.77□□□□□ -0.37
CHD9-220ENST00000569794 SYMPKQ92797 1274 aaKnown RBP12.77□□□□□ -0.37
CHD9-220ENST00000569794 SKOR1P84550 965 aa12.76□□□□□ -0.37
CHD9-220ENST00000569794 WNT7BP56706 349 aa12.75□□□□□ -0.37
CHD9-220ENST00000569794 RC3H1Q5TC82 1133 aaKnown RBP12.75□□□□□ -0.37
CHD9-220ENST00000569794 NUTM1Q86Y26 1132 aa12.75□□□□□ -0.37
CHD9-220ENST00000569794 KRI1Q8N9T8 703 aaKnown RBP12.74□□□□□ -0.37
CHD9-220ENST00000569794 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.73□□□□□ -0.37
CHD9-220ENST00000569794 RETREG3Q86VR2 466 aa12.73□□□□□ -0.37
CHD9-220ENST00000569794 ATP13A2Q9NQ11 1180 aa12.73□□□□□ -0.37
CHD9-220ENST00000569794 HPS1Q92902 700 aa12.72□□□□□ -0.37
CHD9-220ENST00000569794 NUDT12Q9BQG2 462 aa12.7□□□□□ -0.38
CHD9-220ENST00000569794 PCDHGC3Q9UN70 934 aa12.7□□□□□ -0.38
CHD9-220ENST00000569794 FDX1P10109 184 aa12.69□□□□□ -0.38
CHD9-220ENST00000569794 WFS1O76024 890 aa12.68□□□□□ -0.38
CHD9-220ENST00000569794 PTCRAQ6ISU1 281 aaPredicted RBP12.68□□□□□ -0.38
CHD9-220ENST00000569794 SSTR3P32745 418 aaPredicted RBP12.67□□□□□ -0.38
CHD9-220ENST00000569794 C6orf229H3BNL8 230 aa12.66□□□□□ -0.38
CHD9-220ENST00000569794 SNRPBP14678 240 aaKnown RBP12.66□□□□□ -0.38
CHD9-220ENST00000569794 TRIM47Q96LD4 638 aa12.66□□□□□ -0.38
CHD9-220ENST00000569794 NFX1Q12986 1120 aaKnown RBP12.65□□□□□ -0.38
CHD9-220ENST00000569794 SPIRE2Q8WWL2 714 aa12.65□□□□□ -0.38
CHD9-220ENST00000569794 SENP2Q9HC62 589 aa12.65□□□□□ -0.38
CHD9-220ENST00000569794 ALDH1A1P00352 501 aa12.64□□□□□ -0.39
CHD9-220ENST00000569794 SIAH2O43255 324 aa12.63□□□□□ -0.39
CHD9-220ENST00000569794 MS4A1P11836 297 aa12.63□□□□□ -0.39
CHD9-220ENST00000569794 CCNYL3P0C7X3 344 aa12.62□□□□□ -0.39
CHD9-220ENST00000569794 BARGINQ6ZT62 677 aa12.62□□□□□ -0.39
CHD9-220ENST00000569794 EHBP1Q8NDI1 1231 aa12.62□□□□□ -0.39
CHD9-220ENST00000569794 NDUFV2P19404 249 aa12.61□□□□□ -0.39
CHD9-220ENST00000569794 TTLL12Q14166 644 aaPredicted RBP12.61□□□□□ -0.39
CHD9-220ENST00000569794 MOXD2PA6NHM9 499 aa12.6□□□□□ -0.39
CHD9-220ENST00000569794 ZMYND10O75800 440 aa12.6□□□□□ -0.39
CHD9-220ENST00000569794 AMHR2Q16671 573 aa12.6□□□□□ -0.39
CHD9-220ENST00000569794 SH3BP2P78314 561 aa12.59□□□□□ -0.39
CHD9-220ENST00000569794 PTPRNQ16849 979 aa12.59□□□□□ -0.39
CHD9-220ENST00000569794 KIFC2Q96AC6 838 aa12.59□□□□□ -0.39
CHD9-220ENST00000569794 GIGYF2Q6Y7W6 1299 aaKnown RBP12.57□□□□□ -0.4
CHD9-220ENST00000569794 EVA1BQ9NVM1 165 aa12.57□□□□□ -0.4
CHD9-220ENST00000569794 PRR7Q8TB68 274 aa12.56□□□□□ -0.4
CHD9-220ENST00000569794 UNC93B1Q9H1C4 597 aa12.56□□□□□ -0.4
CHD9-220ENST00000569794 TERTO14746 1132 aaKnown RBP12.55□□□□□ -0.4
CHD9-220ENST00000569794 WIPF1O43516 503 aa12.55□□□□□ -0.4
CHD9-220ENST00000569794 LCE2CQ5TA81 110 aa12.55□□□□□ -0.4
CHD9-220ENST00000569794 ZC3H15Q8WU90 426 aaKnown RBP12.55□□□□□ -0.4
CHD9-220ENST00000569794 MTMR2Q13614 643 aa12.54□□□□□ -0.4
CHD9-220ENST00000569794 WASF2Q9Y6W5 498 aa12.54□□□□□ -0.4
CHD9-220ENST00000569794 SPDYE5A6NIY4 337 aa12.53□□□□□ -0.4
CHD9-220ENST00000569794 KCNH2Q12809 1159 aa12.53□□□□□ -0.4
CHD9-220ENST00000569794 DESI1Q6ICB0 168 aa12.53□□□□□ -0.4
CHD9-220ENST00000569794 BEGAINQ9BUH8 593 aa12.53□□□□□ -0.4
CHD9-220ENST00000569794 LINC01559Q495D7 138 aa12.52□□□□□ -0.41
CHD9-220ENST00000569794 BAP1Q92560 729 aa12.52□□□□□ -0.41
CHD9-220ENST00000569794 CAPN5O15484 640 aaPredicted RBP12.51□□□□□ -0.41
CHD9-220ENST00000569794 BMP1P13497 986 aa12.5□□□□□ -0.41
CHD9-220ENST00000569794 GJA5P36382 358 aa12.5□□□□□ -0.41
CHD9-220ENST00000569794 TRIM46Q7Z4K8 759 aa12.5□□□□□ -0.41
CHD9-220ENST00000569794 TBC1D2Q9BYX2 928 aa12.5□□□□□ -0.41
CHD9-220ENST00000569794 ZNF511Q8NB15 262 aa12.49□□□□□ -0.41
CHD9-220ENST00000569794 TLL2Q9Y6L7 1015 aa12.48□□□□□ -0.41
CHD9-220ENST00000569794 INSM1Q01101 510 aaPredicted RBP12.47□□□□□ -0.41
CHD9-220ENST00000569794 RSBN1LQ6PCB5 846 aaPredicted RBP12.47□□□□□ -0.41
CHD9-220ENST00000569794 PARP9Q8IXQ6 854 aa12.47□□□□□ -0.41
CHD9-220ENST00000569794 VARSP26640 1264 aaKnown RBP12.46□□□□□ -0.41
CHD9-220ENST00000569794 STK17AQ9UEE5 414 aa12.46□□□□□ -0.41
CHD9-220ENST00000569794 DIXDC1Q155Q3 683 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 92.8 ms