RNA–Protein interactions for RNA: ENST00000569784.1

SCAPER-223, Transcript of S-phase cyclin A associated protein in the ER, human

TSL 4

Gene SCAPER, Length 580 nt, Biotype processed transcript.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SCAPER-223	ENST00000569784	COL16A1	Q07092	1604 aa	Predicted RBP	12.68	□□□□□ -0.38
SCAPER-223	ENST00000569784	NRXN3	Q9Y4C0	1643 aa		12.68	□□□□□ -0.38
SCAPER-223	ENST00000569784	XRN1	Q8IZH2	1706 aa	Known RBP	12.68	□□□□□ -0.38
SCAPER-223	ENST00000569784	MET	P08581	1390 aa		12.68	□□□□□ -0.38
SCAPER-223	ENST00000569784	RPGRIP1L	Q68CZ1	1315 aa		12.67	□□□□□ -0.38
SCAPER-223	ENST00000569784	RGL3	Q3MIN7	710 aa		12.67	□□□□□ -0.38
SCAPER-223	ENST00000569784	ZNF772	Q68DY9	489 aa	Predicted RBP	12.67	□□□□□ -0.38
SCAPER-223	ENST00000569784	POTEA	Q6S8J7	498 aa		12.67	□□□□□ -0.38
SCAPER-223	ENST00000569784	BRINP3	Q76B58	766 aa		12.67	□□□□□ -0.38
SCAPER-223	ENST00000569784	RGS17	Q9UGC6	210 aa	Predicted RBP	12.67	□□□□□ -0.38
SCAPER-223	ENST00000569784	DCC	P43146	1447 aa		12.67	□□□□□ -0.38
SCAPER-223	ENST00000569784	AHDC1	Q5TGY3	1603 aa	Predicted RBP	12.66	□□□□□ -0.38
SCAPER-223	ENST00000569784	CCDC144A	A2RUR9	1427 aa		12.66	□□□□□ -0.38
SCAPER-223	ENST00000569784	SHPRH	Q149N8	1683 aa		12.65	□□□□□ -0.38
SCAPER-223	ENST00000569784	PITPNM1	O00562	1244 aa		12.65	□□□□□ -0.38
SCAPER-223	ENST00000569784	LRRC59	Q96AG4	307 aa	Known RBP	12.65	□□□□□ -0.38
SCAPER-223	ENST00000569784	SETD1A	O15047	1707 aa	Known RBP	12.65	□□□□□ -0.38
SCAPER-223	ENST00000569784	ADGRL3	Q9HAR2	1447 aa		12.64	□□□□□ -0.39
SCAPER-223	ENST00000569784	ASXL1	Q8IXJ9	1541 aa		12.64	□□□□□ -0.39
SCAPER-223	ENST00000569784	NALCN	Q8IZF0	1738 aa		12.64	□□□□□ -0.39
SCAPER-223	ENST00000569784	PPL	O60437	1756 aa		12.64	□□□□□ -0.39
SCAPER-223	ENST00000569784	ACIN1	Q9UKV3	1341 aa	Known RBP	12.62	□□□□□ -0.39
SCAPER-223	ENST00000569784	MST1R	Q04912	1400 aa		12.62	□□□□□ -0.39
SCAPER-223	ENST00000569784	MPHOSPH9	Q99550	1183 aa		12.62	□□□□□ -0.39
SCAPER-223	ENST00000569784	STK26	Q9P289	416 aa		12.62	□□□□□ -0.39
SCAPER-223	ENST00000569784	NHSL1	Q5SYE7	1610 aa		12.6	□□□□□ -0.39
SCAPER-223	ENST00000569784	RXRB	P28702	533 aa		12.6	□□□□□ -0.39
SCAPER-223	ENST00000569784	SPDYE1	Q8NFV5	336 aa	Predicted RBP	12.6	□□□□□ -0.39
SCAPER-223	ENST00000569784	DDX17	Q92841	729 aa	Known RBP	12.6	□□□□□ -0.39
SCAPER-223	ENST00000569784	C8orf37	Q96NL8	207 aa		12.6	□□□□□ -0.39
SCAPER-223	ENST00000569784	CLEC11A	Q9Y240	323 aa		12.6	□□□□□ -0.39
SCAPER-223	ENST00000569784	LRP6	O75581	1613 aa		12.59	□□□□□ -0.39
SCAPER-223	ENST00000569784	PTCH1	Q13635	1447 aa		12.59	□□□□□ -0.39
SCAPER-223	ENST00000569784	ADAMTS2	O95450	1211 aa		12.58	□□□□□ -0.4
SCAPER-223	ENST00000569784	ESCO1	Q5FWF5	840 aa		12.58	□□□□□ -0.4
SCAPER-223	ENST00000569784	AFF2	P51816	1311 aa		12.58	□□□□□ -0.4
SCAPER-223	ENST00000569784	ANKRD30B	Q9BXX2	1392 aa		12.57	□□□□□ -0.4
SCAPER-223	ENST00000569784	ROBO2	Q9HCK4	1378 aa		12.57	□□□□□ -0.4
SCAPER-223	ENST00000569784	SETD5	Q9C0A6	1442 aa		12.57	□□□□□ -0.4
SCAPER-223	ENST00000569784	NGLY1	Q96IV0	654 aa		12.57	□□□□□ -0.4
SCAPER-223	ENST00000569784	C1orf167	Q5SNV9	1468 aa		12.57	□□□□□ -0.4
SCAPER-223	ENST00000569784	NUTM2F	A1L443	756 aa		12.56	□□□□□ -0.4
SCAPER-223	ENST00000569784	ORAI2	Q96SN7	254 aa		12.56	□□□□□ -0.4
SCAPER-223	ENST00000569784	ADGRF5	Q8IZF2	1346 aa		12.56	□□□□□ -0.4
SCAPER-223	ENST00000569784	LRPPRC	P42704	1394 aa	Known RBP	12.55	□□□□□ -0.4
SCAPER-223	ENST00000569784	TMEM132E	Q6IEE7	984 aa		12.54	□□□□□ -0.4
SCAPER-223	ENST00000569784	NPHP3	Q7Z494	1330 aa		12.54	□□□□□ -0.4
SCAPER-223	ENST00000569784	PNPLA6	Q8IY17	1366 aa		12.54	□□□□□ -0.4
SCAPER-223	ENST00000569784	HAP1	P54257	671 aa	Predicted RBP	12.53	□□□□□ -0.4
SCAPER-223	ENST00000569784	WAPL	Q7Z5K2	1190 aa		12.53	□□□□□ -0.4
SCAPER-223	ENST00000569784	QTRT2	Q9H974	415 aa	Known RBP	12.53	□□□□□ -0.4
SCAPER-223	ENST00000569784	IFT172	Q9UG01	1749 aa		12.53	□□□□□ -0.4
SCAPER-223	ENST00000569784	XPC	Q01831	940 aa	Predicted RBP	12.51	□□□□□ -0.41
SCAPER-223	ENST00000569784	CHRDL2	Q6WN34	429 aa		12.51	□□□□□ -0.41
SCAPER-223	ENST00000569784	POGK	Q9P215	609 aa		12.51	□□□□□ -0.41
SCAPER-223	ENST00000569784	DHX57	Q6P158	1386 aa	Known RBP	12.51	□□□□□ -0.41
SCAPER-223	ENST00000569784	CDC42BPG	Q6DT37	1551 aa		12.51	□□□□□ -0.41
SCAPER-223	ENST00000569784	FOXO3	O43524	673 aa		12.5	□□□□□ -0.41
SCAPER-223	ENST00000569784	RBM6	P78332	1123 aa	Known RBP	12.5	□□□□□ -0.41
SCAPER-223	ENST00000569784	USP21	Q9UK80	565 aa		12.5	□□□□□ -0.41
SCAPER-223	ENST00000569784	KNDC1	Q76NI1	1749 aa		12.49	□□□□□ -0.41
SCAPER-223	ENST00000569784	LAMC1	P11047	1609 aa		12.49	□□□□□ -0.41
SCAPER-223	ENST00000569784	SPATA31E1	Q6ZUB1	1445 aa		12.49	□□□□□ -0.41
SCAPER-223	ENST00000569784	RAB3GAP2	Q9H2M9	1393 aa		12.49	□□□□□ -0.41
SCAPER-223	ENST00000569784	SOS2	Q07890	1332 aa	Predicted RBP	12.49	□□□□□ -0.41
SCAPER-223	ENST00000569784	PLEKHG5	O94827	1062 aa		12.49	□□□□□ -0.41
SCAPER-223	ENST00000569784	SAFB2	Q14151	953 aa	Known RBP eCLIP	12.49	□□□□□ -0.41
SCAPER-223	ENST00000569784	LMOD2	Q6P5Q4	547 aa		12.49	□□□□□ -0.41
SCAPER-223	ENST00000569784	YTHDC2	Q9H6S0	1430 aa	Known RBP	12.48	□□□□□ -0.41
SCAPER-223	ENST00000569784	KDM2A	Q9Y2K7	1162 aa		12.48	□□□□□ -0.41
SCAPER-223	ENST00000569784	PIK3C2G	O75747	1445 aa		12.47	□□□□□ -0.41
SCAPER-223	ENST00000569784	PRAG1	Q86YV5	1406 aa		12.47	□□□□□ -0.41
SCAPER-223	ENST00000569784	ABCC11	Q96J66	1382 aa		12.47	□□□□□ -0.41
SCAPER-223	ENST00000569784	PSME1	Q06323	249 aa		12.47	□□□□□ -0.41
SCAPER-223	ENST00000569784	CFAP70	Q5T0N1	1121 aa		12.47	□□□□□ -0.41
SCAPER-223	ENST00000569784	UPF1	Q92900	1129 aa	Known RBP eCLIP	12.47	□□□□□ -0.41
SCAPER-223	ENST00000569784	TRPC5	Q9UL62	973 aa	Predicted RBP	12.47	□□□□□ -0.41
SCAPER-223	ENST00000569784	CDK12	Q9NYV4	1490 aa	Predicted RBP	12.46	□□□□□ -0.41
SCAPER-223	ENST00000569784	KIF1A	Q12756	1690 aa		12.46	□□□□□ -0.41
SCAPER-223	ENST00000569784	PRR29	P0C7W0	189 aa		12.46	□□□□□ -0.41
SCAPER-223	ENST00000569784	FMN2	Q9NZ56	1722 aa		12.45	□□□□□ -0.42
SCAPER-223	ENST00000569784	PLEKHH1	Q9ULM0	1364 aa		12.45	□□□□□ -0.42
SCAPER-223	ENST00000569784	POTEH	Q6S545	545 aa		12.45	□□□□□ -0.42
SCAPER-223	ENST00000569784	DCAF11	Q8TEB1	546 aa		12.45	□□□□□ -0.42
SCAPER-223	ENST00000569784	PRAM1	Q96QH2	718 aa		12.45	□□□□□ -0.42
SCAPER-223	ENST00000569784	C14orf93	Q9H972	538 aa	Known RBP	12.45	□□□□□ -0.42
SCAPER-223	ENST00000569784	FBXO3	Q9UK99	471 aa		12.45	□□□□□ -0.42
SCAPER-223	ENST00000569784	TECPR2	O15040	1411 aa		12.45	□□□□□ -0.42
SCAPER-223	ENST00000569784	KRT28	Q7Z3Y7	464 aa		12.44	□□□□□ -0.42
SCAPER-223	ENST00000569784	PHF8	Q9UPP1	1060 aa		12.44	□□□□□ -0.42
SCAPER-223	ENST00000569784	MYOM2	P54296	1465 aa		12.44	□□□□□ -0.42
SCAPER-223	ENST00000569784	COL22A1	Q8NFW1	1626 aa	Predicted RBP	12.44	□□□□□ -0.42
SCAPER-223	ENST00000569784	RGPD8	O14715	1765 aa	Predicted RBP	12.43	□□□□□ -0.42
SCAPER-223	ENST00000569784	MARF1	Q9Y4F3	1742 aa	Known RBP	12.43	□□□□□ -0.42
SCAPER-223	ENST00000569784	SIRT1	Q96EB6	747 aa		12.43	□□□□□ -0.42
SCAPER-223	ENST00000569784	TRAK1	Q9UPV9	953 aa		12.43	□□□□□ -0.42
SCAPER-223	ENST00000569784	CCDC9	Q9Y3X0	531 aa	Known RBP	12.43	□□□□□ -0.42
SCAPER-223	ENST00000569784	RGS12	O14924	1447 aa		12.42	□□□□□ -0.42
SCAPER-223	ENST00000569784	ATAD2	Q6PL18	1390 aa		12.42	□□□□□ -0.42
SCAPER-223	ENST00000569784	PXDN	Q92626	1479 aa		12.41	□□□□□ -0.42

Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms