RNA–Protein interactions for RNA: ENST00000569036.2

CDH3-208, Transcript of cadherin 3, humanhuman

TSL 4

Gene CDH3, Length 563 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-208ENST00000569036 PTPN23Q9H3S7 1636 aa17.89■□□□□ 0.45
CDH3-208ENST00000569036 ANKRD30AQ9BXX3 1397 aa17.87■□□□□ 0.45
CDH3-208ENST00000569036 KRT27Q7Z3Y8 459 aa17.86■□□□□ 0.45
CDH3-208ENST00000569036 PXDNQ92626 1479 aa17.86■□□□□ 0.45
CDH3-208ENST00000569036 RGPD1P0DJD0 1748 aa17.86■□□□□ 0.45
CDH3-208ENST00000569036 E9PCH4 1651 aa17.83■□□□□ 0.45
CDH3-208ENST00000569036 IQGAP3Q86VI3 1631 aa17.83■□□□□ 0.45
CDH3-208ENST00000569036 SENP3-EIF4A1A0A087X0R7 540 aa17.83■□□□□ 0.44
CDH3-208ENST00000569036 EN1Q05925 392 aaPredicted RBP17.83■□□□□ 0.44
CDH3-208ENST00000569036 CHIC2Q9UKJ5 165 aa17.82■□□□□ 0.44
CDH3-208ENST00000569036 USP32Q8NFA0 1604 aa17.81■□□□□ 0.44
CDH3-208ENST00000569036 TNS1Q9HBL0 1735 aaKnown RBP17.81■□□□□ 0.44
CDH3-208ENST00000569036 NPHP3Q7Z494 1330 aa17.8■□□□□ 0.44
CDH3-208ENST00000569036 ONECUT3O60422 494 aaPredicted RBP17.8■□□□□ 0.44
CDH3-208ENST00000569036 KANK4Q5T7N3 995 aaPredicted RBP17.79■□□□□ 0.44
CDH3-208ENST00000569036 PLCH1Q4KWH8 1693 aa17.79■□□□□ 0.44
CDH3-208ENST00000569036 DISP2A7MBM2 1401 aa17.79■□□□□ 0.44
CDH3-208ENST00000569036 ADGRL2O95490 1459 aa17.78■□□□□ 0.44
CDH3-208ENST00000569036 VPS72Q15906 364 aa17.78■□□□□ 0.44
CDH3-208ENST00000569036 NWD2Q9ULI1 1742 aa17.78■□□□□ 0.44
CDH3-208ENST00000569036 XPCQ01831 940 aaPredicted RBP17.77■□□□□ 0.44
CDH3-208ENST00000569036 CAMTA1Q9Y6Y1 1673 aa17.76■□□□□ 0.43
CDH3-208ENST00000569036 ANKRD50Q9ULJ7 1429 aa17.74■□□□□ 0.43
CDH3-208ENST00000569036 DCAF8L1A6NGE4 600 aa17.74■□□□□ 0.43
CDH3-208ENST00000569036 ZNF784Q8NCA9 323 aaPredicted RBP17.74■□□□□ 0.43
CDH3-208ENST00000569036 ROBO2Q9HCK4 1378 aa17.74■□□□□ 0.43
CDH3-208ENST00000569036 CEP350Q5VT06 3117 aa17.74■□□□□ 0.43
CDH3-208ENST00000569036 UTRNP46939 3433 aa17.73■□□□□ 0.43
CDH3-208ENST00000569036 CCDC9Q9Y3X0 531 aaKnown RBP17.73■□□□□ 0.43
CDH3-208ENST00000569036 NINLQ9Y2I6 1382 aa17.72■□□□□ 0.43
CDH3-208ENST00000569036 EZH2Q15910 746 aaKnown RBP17.72■□□□□ 0.43
CDH3-208ENST00000569036 ESCO1Q5FWF5 840 aa17.72■□□□□ 0.43
CDH3-208ENST00000569036 CDC42BPGQ6DT37 1551 aa17.71■□□□□ 0.43
CDH3-208ENST00000569036 A0A0G2JS52 829 aa17.71■□□□□ 0.43
CDH3-208ENST00000569036 FOXO3O43524 673 aa17.71■□□□□ 0.43
CDH3-208ENST00000569036 MYT1Q01538 1121 aa17.71■□□□□ 0.43
CDH3-208ENST00000569036 ADGRB2O60241 1585 aa17.7■□□□□ 0.42
CDH3-208ENST00000569036 C1QTNF8P60827 252 aa17.69■□□□□ 0.42
CDH3-208ENST00000569036 PRAG1Q86YV5 1406 aa17.69■□□□□ 0.42
CDH3-208ENST00000569036 RREB1Q92766 1687 aa17.68■□□□□ 0.42
CDH3-208ENST00000569036 FAM182BQ5T319 152 aa17.68■□□□□ 0.42
CDH3-208ENST00000569036 PPP1R1BQ9UD71 204 aaPredicted RBP17.68■□□□□ 0.42
CDH3-208ENST00000569036 NEXMIFQ5QGS0 1516 aa17.67■□□□□ 0.42
CDH3-208ENST00000569036 LRPPRCP42704 1394 aaKnown RBP17.67■□□□□ 0.42
CDH3-208ENST00000569036 NUP188Q5SRE5 1749 aa17.67■□□□□ 0.42
CDH3-208ENST00000569036 NRAPQ86VF7 1730 aa17.67■□□□□ 0.42
CDH3-208ENST00000569036 ABCA3Q99758 1704 aa17.67■□□□□ 0.42
CDH3-208ENST00000569036 VPS8Q8N3P4 1428 aa17.67■□□□□ 0.42
CDH3-208ENST00000569036 CAMKK2Q96RR4 588 aa17.67■□□□□ 0.42
CDH3-208ENST00000569036 SPATA31A3Q5VYP0 1347 aa17.67■□□□□ 0.42
CDH3-208ENST00000569036 FAM98CQ17RN3 349 aaKnown RBP17.66■□□□□ 0.42
CDH3-208ENST00000569036 HFM1A2PYH4 1435 aa17.65■□□□□ 0.42
CDH3-208ENST00000569036 ZNF326Q5BKZ1 582 aaKnown RBP17.65■□□□□ 0.42
CDH3-208ENST00000569036 SPON1Q9HCB6 807 aa17.63■□□□□ 0.41
CDH3-208ENST00000569036 PARD3Q8TEW0 1356 aa17.63■□□□□ 0.41
CDH3-208ENST00000569036 THSD7AQ9UPZ6 1657 aa17.62■□□□□ 0.41
CDH3-208ENST00000569036 HAP1P54257 671 aaPredicted RBP17.62■□□□□ 0.41
CDH3-208ENST00000569036 CCDC144AA2RUR9 1427 aa17.62■□□□□ 0.41
CDH3-208ENST00000569036 KIF1AQ12756 1690 aa17.61■□□□□ 0.41
CDH3-208ENST00000569036 CABLES1Q8TDN4 633 aa17.6■□□□□ 0.41
CDH3-208ENST00000569036 CHD4Q14839 1912 aa17.59■□□□□ 0.41
CDH3-208ENST00000569036 KCNQ2O43526 872 aa17.59■□□□□ 0.41
CDH3-208ENST00000569036 TNS3Q68CZ2 1445 aa17.58■□□□□ 0.41
CDH3-208ENST00000569036 TRIM37O94972 964 aa17.58■□□□□ 0.4
CDH3-208ENST00000569036 NAIPQ13075 1403 aa17.57■□□□□ 0.4
CDH3-208ENST00000569036 NUTM2FA1L443 756 aa17.56■□□□□ 0.4
CDH3-208ENST00000569036 FAM83GA6ND36 823 aa17.56■□□□□ 0.4
CDH3-208ENST00000569036 PLEKHG5O94827 1062 aa17.56■□□□□ 0.4
CDH3-208ENST00000569036 NRKQ7Z2Y5 1582 aa17.55■□□□□ 0.4
CDH3-208ENST00000569036 APBA3O96018 575 aa17.55■□□□□ 0.4
CDH3-208ENST00000569036 NBPF8Q3BBV2 869 aa17.55■□□□□ 0.4
CDH3-208ENST00000569036 NBPF14Q5TI25 921 aa17.55■□□□□ 0.4
CDH3-208ENST00000569036 KRT28Q7Z3Y7 464 aa17.55■□□□□ 0.4
CDH3-208ENST00000569036 FMN2Q9NZ56 1722 aa17.55■□□□□ 0.4
CDH3-208ENST00000569036 CLTCL1P53675 1640 aa17.54■□□□□ 0.4
CDH3-208ENST00000569036 BTG4Q9NY30 223 aa17.52■□□□□ 0.4
CDH3-208ENST00000569036 COL14A1Q05707 1796 aaKnown RBP17.52■□□□□ 0.4
CDH3-208ENST00000569036 SPATA31A5Q5VU36 1347 aa17.51■□□□□ 0.39
CDH3-208ENST00000569036 SPATA31A7Q8IWB4 1347 aa17.51■□□□□ 0.39
CDH3-208ENST00000569036 FAM196AQ6ZSG2 479 aa17.51■□□□□ 0.39
CDH3-208ENST00000569036 KIF1BO60333 1816 aa17.51■□□□□ 0.39
CDH3-208ENST00000569036 MYOM1P52179 1685 aa17.51■□□□□ 0.39
CDH3-208ENST00000569036 NUP155O75694 1391 aa17.51■□□□□ 0.39
CDH3-208ENST00000569036 CASZ1Q86V15 1759 aa17.5■□□□□ 0.39
CDH3-208ENST00000569036 SBNO1A3KN83 1393 aa17.48■□□□□ 0.39
CDH3-208ENST00000569036 ARHGEF10O15013 1369 aa17.48■□□□□ 0.39
CDH3-208ENST00000569036 RGPD8O14715 1765 aaPredicted RBP17.48■□□□□ 0.39
CDH3-208ENST00000569036 RRBP1Q9P2E9 1410 aaKnown RBP17.47■□□□□ 0.39
CDH3-208ENST00000569036 PSME1Q06323 249 aa17.46■□□□□ 0.39
CDH3-208ENST00000569036 LMOD2Q6P5Q4 547 aa17.46■□□□□ 0.39
CDH3-208ENST00000569036 VGFO15240 615 aaPredicted RBP17.45■□□□□ 0.38
CDH3-208ENST00000569036 GIGYF1O75420 1035 aaPredicted RBP17.45■□□□□ 0.38
CDH3-208ENST00000569036 FAM50AQ14320 339 aaKnown RBP17.45■□□□□ 0.38
CDH3-208ENST00000569036 IFT172Q9UG01 1749 aa17.44■□□□□ 0.38
CDH3-208ENST00000569036 WAPLQ7Z5K2 1190 aa17.43■□□□□ 0.38
CDH3-208ENST00000569036 TECPR2O15040 1411 aa17.43■□□□□ 0.38
CDH3-208ENST00000569036 PPLO60437 1756 aa17.42■□□□□ 0.38
CDH3-208ENST00000569036 NRXN1Q9ULB1 1477 aa17.42■□□□□ 0.38
CDH3-208ENST00000569036 PHF8Q9UPP1 1060 aa17.41■□□□□ 0.38
CDH3-208ENST00000569036 KNDC1Q76NI1 1749 aa17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms