RNA–Protein interactions for RNA: ENST00000567720.5

COMMD4-220, Transcript of COMM domain containing 4, humanhuman

TSL 4

Gene COMMD4, Length 544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-220ENST00000567720 C19orf44Q9H6X5 657 aa24.76■■□□□ 1.55
COMMD4-220ENST00000567720 PIP4K2BP78356 416 aa24.75■■□□□ 1.55
COMMD4-220ENST00000567720 NBPF8Q3BBV2 869 aa24.75■■□□□ 1.55
COMMD4-220ENST00000567720 WAPLQ7Z5K2 1190 aa24.75■■□□□ 1.55
COMMD4-220ENST00000567720 RGPD8O14715 1765 aaPredicted RBP24.73■■□□□ 1.55
COMMD4-220ENST00000567720 SCAF1Q9H7N4 1312 aaKnown RBP24.73■■□□□ 1.55
COMMD4-220ENST00000567720 TRAK1Q9UPV9 953 aa24.73■■□□□ 1.55
COMMD4-220ENST00000567720 NHSL1Q5SYE7 1610 aa24.72■■□□□ 1.55
COMMD4-220ENST00000567720 GPRASP1Q5JY77 1395 aa24.71■■□□□ 1.55
COMMD4-220ENST00000567720 CADPS2Q86UW7 1296 aa24.71■■□□□ 1.55
COMMD4-220ENST00000567720 SIRT1Q96EB6 747 aa24.71■■□□□ 1.55
COMMD4-220ENST00000567720 PRAM1Q96QH2 718 aa24.71■■□□□ 1.55
COMMD4-220ENST00000567720 ROCK2O75116 1388 aaKnown RBP24.7■■□□□ 1.55
COMMD4-220ENST00000567720 USP32Q8NFA0 1604 aa24.7■■□□□ 1.54
COMMD4-220ENST00000567720 PHLPP1O60346 1717 aa24.69■■□□□ 1.54
COMMD4-220ENST00000567720 ATF3P18847 181 aa24.69■■□□□ 1.54
COMMD4-220ENST00000567720 AHDC1Q5TGY3 1603 aaPredicted RBP24.68■■□□□ 1.54
COMMD4-220ENST00000567720 C1orf167Q5SNV9 1468 aa24.67■■□□□ 1.54
COMMD4-220ENST00000567720 SAFB2Q14151 953 aaKnown RBP eCLIP24.66■■□□□ 1.54
COMMD4-220ENST00000567720 SLAIN2Q9P270 581 aa24.66■■□□□ 1.54
COMMD4-220ENST00000567720 COL16A1Q07092 1604 aaPredicted RBP24.65■■□□□ 1.54
COMMD4-220ENST00000567720 KIF1AQ12756 1690 aa24.63■■□□□ 1.53
COMMD4-220ENST00000567720 POGKQ9P215 609 aa24.63■■□□□ 1.53
COMMD4-220ENST00000567720 ITSN1Q15811 1721 aa24.63■■□□□ 1.53
COMMD4-220ENST00000567720 TOPAZ1Q8N9V7 1692 aa24.62■■□□□ 1.53
COMMD4-220ENST00000567720 TULP4Q9NRJ4 1543 aa24.61■■□□□ 1.53
COMMD4-220ENST00000567720 TIMELESSQ9UNS1 1208 aa24.6■■□□□ 1.53
COMMD4-220ENST00000567720 HSPA1LP34931 641 aa24.59■■□□□ 1.53
COMMD4-220ENST00000567720 MINK1Q8N4C8 1332 aaPredicted RBP24.59■■□□□ 1.53
COMMD4-220ENST00000567720 BRINP3Q76B58 766 aa24.58■■□□□ 1.53
COMMD4-220ENST00000567720 HIRIP3Q9BW71 556 aaPredicted RBP24.57■■□□□ 1.52
COMMD4-220ENST00000567720 EIF3AQ14152 1382 aaKnown RBP24.56■■□□□ 1.52
COMMD4-220ENST00000567720 ATP7BP35670 1465 aa24.56■■□□□ 1.52
COMMD4-220ENST00000567720 CENPJQ9HC77 1338 aaPredicted RBP24.56■■□□□ 1.52
COMMD4-220ENST00000567720 ANKARQ7Z5J8 1434 aa24.55■■□□□ 1.52
COMMD4-220ENST00000567720 CARD11Q9BXL7 1154 aa24.54■■□□□ 1.52
COMMD4-220ENST00000567720 SHPRHQ149N8 1683 aa24.53■■□□□ 1.52
COMMD4-220ENST00000567720 NUTM2FA1L443 756 aa24.52■■□□□ 1.52
COMMD4-220ENST00000567720 ORAI2Q96SN7 254 aa24.51■■□□□ 1.51
COMMD4-220ENST00000567720 PRR36Q9H6K5 1346 aa24.49■■□□□ 1.51
COMMD4-220ENST00000567720 WASLO00401 505 aaPredicted RBP24.48■■□□□ 1.51
COMMD4-220ENST00000567720 PXDNQ92626 1479 aa24.48■■□□□ 1.51
COMMD4-220ENST00000567720 SBNO2Q9Y2G9 1366 aa24.47■■□□□ 1.51
COMMD4-220ENST00000567720 DDX17Q92841 729 aaKnown RBP24.46■■□□□ 1.51
COMMD4-220ENST00000567720 TRPM3Q9HCF6 1732 aaPredicted RBP24.45■■□□□ 1.5
COMMD4-220ENST00000567720 USP47Q96K76 1375 aa24.44■■□□□ 1.5
COMMD4-220ENST00000567720 ESCO1Q5FWF5 840 aa24.44■■□□□ 1.5
COMMD4-220ENST00000567720 MED1Q15648 1581 aaPredicted RBP24.42■■□□□ 1.5
COMMD4-220ENST00000567720 COL22A1Q8NFW1 1626 aaPredicted RBP24.41■■□□□ 1.5
COMMD4-220ENST00000567720 CDK19Q9BWU1 502 aa24.4■■□□□ 1.5
COMMD4-220ENST00000567720 AKAP12Q02952 1782 aa24.39■■□□□ 1.49
COMMD4-220ENST00000567720 NPHP3Q7Z494 1330 aa24.38■■□□□ 1.49
COMMD4-220ENST00000567720 ALS2Q96Q42 1657 aa24.38■■□□□ 1.49
COMMD4-220ENST00000567720 PHF8Q9UPP1 1060 aa24.38■■□□□ 1.49
COMMD4-220ENST00000567720 ABCA3Q99758 1704 aa24.38■■□□□ 1.49
COMMD4-220ENST00000567720 SOS2Q07890 1332 aaPredicted RBP24.37■■□□□ 1.49
COMMD4-220ENST00000567720 JCADQ9P266 1359 aa24.37■■□□□ 1.49
COMMD4-220ENST00000567720 NUDT16Q96DE0 195 aaKnown RBP24.36■■□□□ 1.49
COMMD4-220ENST00000567720 FOXO3O43524 673 aa24.35■■□□□ 1.49
COMMD4-220ENST00000567720 PPIP5K1Q6PFW1 1433 aa24.35■■□□□ 1.49
COMMD4-220ENST00000567720 EVC2Q86UK5 1308 aa24.35■■□□□ 1.49
COMMD4-220ENST00000567720 ST20-MTHFSA0A0A6YYL1 179 aa24.34■■□□□ 1.49
COMMD4-220ENST00000567720 SRPK2P78362 688 aaKnown RBP24.34■■□□□ 1.49
COMMD4-220ENST00000567720 TESK2Q96S53 571 aa24.34■■□□□ 1.49
COMMD4-220ENST00000567720 CABP2Q9NPB3 220 aa24.34■■□□□ 1.49
COMMD4-220ENST00000567720 PNPLA6Q8IY17 1366 aa24.33■■□□□ 1.49
COMMD4-220ENST00000567720 XPCQ01831 940 aaPredicted RBP24.33■■□□□ 1.49
COMMD4-220ENST00000567720 PMFBP1Q8TBY8 1022 aa24.33■■□□□ 1.49
COMMD4-220ENST00000567720 NRKQ7Z2Y5 1582 aa24.33■■□□□ 1.48
COMMD4-220ENST00000567720 MON2Q7Z3U7 1717 aa24.32■■□□□ 1.48
COMMD4-220ENST00000567720 CRYBG1Q9Y4K1 1723 aa24.32■■□□□ 1.48
COMMD4-220ENST00000567720 LRP6O75581 1613 aa24.32■■□□□ 1.48
COMMD4-220ENST00000567720 MYOM1P52179 1685 aa24.31■■□□□ 1.48
COMMD4-220ENST00000567720 POLR3AO14802 1390 aaPredicted RBP24.3■■□□□ 1.48
COMMD4-220ENST00000567720 MARF1Q9Y4F3 1742 aaKnown RBP24.3■■□□□ 1.48
COMMD4-220ENST00000567720 TNS3Q68CZ2 1445 aa24.3■■□□□ 1.48
COMMD4-220ENST00000567720 DISP3Q9P2K9 1392 aa24.29■■□□□ 1.48
COMMD4-220ENST00000567720 CCDC61Q9Y6R9 512 aa24.28■■□□□ 1.48
COMMD4-220ENST00000567720 ATAD2Q6PL18 1390 aa24.28■■□□□ 1.48
COMMD4-220ENST00000567720 LRRC59Q96AG4 307 aaKnown RBP24.27■■□□□ 1.48
COMMD4-220ENST00000567720 SBNO1A3KN83 1393 aa24.26■■□□□ 1.47
COMMD4-220ENST00000567720 PHRF1Q9P1Y6 1649 aaKnown RBP24.24■■□□□ 1.47
COMMD4-220ENST00000567720 KRT28Q7Z3Y7 464 aa24.24■■□□□ 1.47
COMMD4-220ENST00000567720 PLEKHG3A1L390 1219 aa24.23■■□□□ 1.47
COMMD4-220ENST00000567720 NGDNQ8NEJ9 315 aaKnown RBP24.23■■□□□ 1.47
COMMD4-220ENST00000567720 ACEP12821 1306 aa24.23■■□□□ 1.47
COMMD4-220ENST00000567720 SPATA31A6Q5VVP1 1343 aa24.23■■□□□ 1.47
COMMD4-220ENST00000567720 SPATA31A3Q5VYP0 1347 aa24.23■■□□□ 1.47
COMMD4-220ENST00000567720 PIK3C2AO00443 1686 aa24.23■■□□□ 1.47
COMMD4-220ENST00000567720 CD163L1Q9NR16 1453 aa24.22■■□□□ 1.47
COMMD4-220ENST00000567720 USP6P35125 1406 aa24.2■■□□□ 1.46
COMMD4-220ENST00000567720 PSME1Q06323 249 aa24.2■■□□□ 1.46
COMMD4-220ENST00000567720 CABP1Q9NZU7 370 aa24.19■■□□□ 1.46
COMMD4-220ENST00000567720 CPSF1Q10570 1443 aaKnown RBP24.18■■□□□ 1.46
COMMD4-220ENST00000567720 HSPA5P11021 654 aaKnown RBP24.18■■□□□ 1.46
COMMD4-220ENST00000567720 EIF4G2P78344 907 aaKnown RBP eCLIP24.18■■□□□ 1.46
COMMD4-220ENST00000567720 ARHGEF10O15013 1369 aa24.17■■□□□ 1.46
COMMD4-220ENST00000567720 USP54Q70EL1 1684 aa24.16■■□□□ 1.46
COMMD4-220ENST00000567720 TMF1P82094 1093 aa24.16■■□□□ 1.46
COMMD4-220ENST00000567720 SSH2Q76I76 1423 aa24.16■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 133.9 ms