RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 SLC24A1O60721 1099 aa28.99■■■□□ 2.23
CLN3-212ENST00000564574 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.98■■■□□ 2.23
CLN3-212ENST00000564574 LRRC7Q96NW7 1537 aa28.98■■■□□ 2.23
CLN3-212ENST00000564574 XIRP1Q702N8 1843 aaKnown RBP28.97■■■□□ 2.23
CLN3-212ENST00000564574 ADGRB2O60241 1585 aa28.96■■■□□ 2.23
CLN3-212ENST00000564574 NALCNQ8IZF0 1738 aa28.96■■■□□ 2.23
CLN3-212ENST00000564574 TMEM94Q12767 1356 aa28.93■■■□□ 2.22
CLN3-212ENST00000564574 SAFB2Q14151 953 aaKnown RBP eCLIP28.93■■■□□ 2.22
CLN3-212ENST00000564574 TESK2Q96S53 571 aa28.93■■■□□ 2.22
CLN3-212ENST00000564574 ADGRL3Q9HAR2 1447 aa28.93■■■□□ 2.22
CLN3-212ENST00000564574 MINK1Q8N4C8 1332 aaPredicted RBP28.9■■■□□ 2.22
CLN3-212ENST00000564574 CDC42BPGQ6DT37 1551 aa28.89■■■□□ 2.22
CLN3-212ENST00000564574 TULP4Q9NRJ4 1543 aa28.86■■■□□ 2.21
CLN3-212ENST00000564574 TMF1P82094 1093 aa28.86■■■□□ 2.21
CLN3-212ENST00000564574 C14orf37Q86TY3 774 aa28.86■■■□□ 2.21
CLN3-212ENST00000564574 HIRIP3Q9BW71 556 aaPredicted RBP28.86■■■□□ 2.21
CLN3-212ENST00000564574 EVC2Q86UK5 1308 aa28.86■■■□□ 2.21
CLN3-212ENST00000564574 IQSEC2Q5JU85 1478 aa28.85■■■□□ 2.21
CLN3-212ENST00000564574 DCCP43146 1447 aa28.85■■■□□ 2.21
CLN3-212ENST00000564574 RBM33Q96EV2 1170 aaKnown RBP28.84■■■□□ 2.21
CLN3-212ENST00000564574 C19orf44Q9H6X5 657 aa28.84■■■□□ 2.21
CLN3-212ENST00000564574 FMN2Q9NZ56 1722 aa28.83■■■□□ 2.21
CLN3-212ENST00000564574 MSH6P52701 1360 aa28.83■■■□□ 2.21
CLN3-212ENST00000564574 WASLO00401 505 aaPredicted RBP28.82■■■□□ 2.2
CLN3-212ENST00000564574 CDCA8Q53HL2 280 aa28.81■■■□□ 2.2
CLN3-212ENST00000564574 PUS7Q96PZ0 661 aaKnown RBP28.8■■■□□ 2.2
CLN3-212ENST00000564574 DISP3Q9P2K9 1392 aa28.79■■■□□ 2.2
CLN3-212ENST00000564574 CDK19Q9BWU1 502 aa28.78■■■□□ 2.2
CLN3-212ENST00000564574 ITSN1Q15811 1721 aa28.74■■■□□ 2.19
CLN3-212ENST00000564574 ATF3P18847 181 aa28.74■■■□□ 2.19
CLN3-212ENST00000564574 SRPK2P78362 688 aaKnown RBP28.74■■■□□ 2.19
CLN3-212ENST00000564574 CADPS2Q86UW7 1296 aa28.74■■■□□ 2.19
CLN3-212ENST00000564574 ANKARQ7Z5J8 1434 aa28.74■■■□□ 2.19
CLN3-212ENST00000564574 ZNF316A6NFI3 1004 aaPredicted RBP28.72■■■□□ 2.19
CLN3-212ENST00000564574 ATAD2Q6PL18 1390 aa28.72■■■□□ 2.19
CLN3-212ENST00000564574 USP32Q8NFA0 1604 aa28.72■■■□□ 2.19
CLN3-212ENST00000564574 TOPAZ1Q8N9V7 1692 aa28.7■■■□□ 2.19
CLN3-212ENST00000564574 C11orf95C9JLR9 678 aaPredicted RBP28.7■■■□□ 2.18
CLN3-212ENST00000564574 CABP2Q9NPB3 220 aa28.7■■■□□ 2.18
CLN3-212ENST00000564574 ATP7BP35670 1465 aa28.7■■■□□ 2.18
CLN3-212ENST00000564574 RGPD8O14715 1765 aaPredicted RBP28.7■■■□□ 2.18
CLN3-212ENST00000564574 CCDC7Q96M83 1385 aa28.69■■■□□ 2.18
CLN3-212ENST00000564574 KIF7Q2M1P5 1343 aa28.69■■■□□ 2.18
CLN3-212ENST00000564574 MST1RQ04912 1400 aa28.68■■■□□ 2.18
CLN3-212ENST00000564574 UBAP1LF5GYI3 381 aa28.67■■■□□ 2.18
CLN3-212ENST00000564574 NUDT16Q96DE0 195 aaKnown RBP28.66■■■□□ 2.18
CLN3-212ENST00000564574 WASHC2AQ641Q2 1341 aa28.66■■■□□ 2.18
CLN3-212ENST00000564574 NINLQ9Y2I6 1382 aa28.65■■■□□ 2.18
CLN3-212ENST00000564574 MYOM1P52179 1685 aa28.65■■■□□ 2.18
CLN3-212ENST00000564574 PRR36Q9H6K5 1346 aa28.65■■■□□ 2.18
CLN3-212ENST00000564574 C1orf167Q5SNV9 1468 aa28.65■■■□□ 2.18
CLN3-212ENST00000564574 CCDC61Q9Y6R9 512 aa28.63■■■□□ 2.17
CLN3-212ENST00000564574 KIF1AQ12756 1690 aa28.61■■■□□ 2.17
CLN3-212ENST00000564574 NUTM2FA1L443 756 aa28.61■■■□□ 2.17
CLN3-212ENST00000564574 POLR3GLQ9BT43 218 aa28.61■■■□□ 2.17
CLN3-212ENST00000564574 PPIP5K1Q6PFW1 1433 aa28.6■■■□□ 2.17
CLN3-212ENST00000564574 SLAIN2Q9P270 581 aa28.58■■■□□ 2.17
CLN3-212ENST00000564574 PLEKHG3A1L390 1219 aa28.56■■■□□ 2.16
CLN3-212ENST00000564574 TOM1O60784 492 aa28.56■■■□□ 2.16
CLN3-212ENST00000564574 TMC1Q8TDI8 760 aa28.55■■■□□ 2.16
CLN3-212ENST00000564574 AKAP12Q02952 1782 aa28.55■■■□□ 2.16
CLN3-212ENST00000564574 CABP1Q9NZU7 370 aa28.54■■■□□ 2.16
CLN3-212ENST00000564574 ESCO1Q5FWF5 840 aa28.53■■■□□ 2.16
CLN3-212ENST00000564574 PHF8Q9UPP1 1060 aa28.53■■■□□ 2.16
CLN3-212ENST00000564574 ORAI2Q96SN7 254 aa28.51■■■□□ 2.15
CLN3-212ENST00000564574 SLC12A5Q9H2X9 1139 aa28.51■■■□□ 2.15
CLN3-212ENST00000564574 POLR3AO14802 1390 aaPredicted RBP28.5■■■□□ 2.15
CLN3-212ENST00000564574 ANKRD36BQ8N2N9 1353 aa28.5■■■□□ 2.15
CLN3-212ENST00000564574 TERF2IPQ9NYB0 399 aa28.49■■■□□ 2.15
CLN3-212ENST00000564574 MON2Q7Z3U7 1717 aa28.49■■■□□ 2.15
CLN3-212ENST00000564574 ROBO1Q9Y6N7 1651 aa28.48■■■□□ 2.15
CLN3-212ENST00000564574 CD163L1Q9NR16 1453 aa28.48■■■□□ 2.15
CLN3-212ENST00000564574 CPSF1Q10570 1443 aaKnown RBP28.48■■■□□ 2.15
CLN3-212ENST00000564574 BRINP3Q76B58 766 aa28.47■■■□□ 2.15
CLN3-212ENST00000564574 HDGFL2Q7Z4V5 671 aaPredicted RBP28.47■■■□□ 2.15
CLN3-212ENST00000564574 PMFBP1Q8TBY8 1022 aa28.47■■■□□ 2.15
CLN3-212ENST00000564574 ACEP12821 1306 aa28.46■■■□□ 2.15
CLN3-212ENST00000564574 NGDNQ8NEJ9 315 aaKnown RBP28.46■■■□□ 2.15
CLN3-212ENST00000564574 ZNF692Q9BU19 519 aaPredicted RBP28.46■■■□□ 2.15
CLN3-212ENST00000564574 SCAF1Q9H7N4 1312 aaKnown RBP28.45■■■□□ 2.15
CLN3-212ENST00000564574 NHSL1Q5SYE7 1610 aa28.45■■■□□ 2.14
CLN3-212ENST00000564574 A0A1W2PP64 1363 aa28.45■■■□□ 2.14
CLN3-212ENST00000564574 PIP4K2BP78356 416 aa28.44■■■□□ 2.14
CLN3-212ENST00000564574 BRD4O60885 1362 aaPredicted RBP28.42■■■□□ 2.14
CLN3-212ENST00000564574 KTN1Q86UP2 1357 aaKnown RBP28.41■■■□□ 2.14
CLN3-212ENST00000564574 PANK3Q9H999 370 aa28.41■■■□□ 2.14
CLN3-212ENST00000564574 NRKQ7Z2Y5 1582 aa28.41■■■□□ 2.14
CLN3-212ENST00000564574 NPHP3Q7Z494 1330 aa28.41■■■□□ 2.14
CLN3-212ENST00000564574 USP6P35125 1406 aa28.4■■■□□ 2.14
CLN3-212ENST00000564574 DDX10Q13206 875 aaKnown RBP28.39■■■□□ 2.14
CLN3-212ENST00000564574 AHDC1Q5TGY3 1603 aaPredicted RBP28.39■■■□□ 2.13
CLN3-212ENST00000564574 EDC4Q6P2E9 1401 aaKnown RBP28.37■■■□□ 2.13
CLN3-212ENST00000564574 FOXO3O43524 673 aa28.37■■■□□ 2.13
CLN3-212ENST00000564574 PSME1Q06323 249 aa28.37■■■□□ 2.13
CLN3-212ENST00000564574 TRPM3Q9HCF6 1732 aaPredicted RBP28.36■■■□□ 2.13
CLN3-212ENST00000564574 ILDR2Q71H61 639 aa28.36■■■□□ 2.13
CLN3-212ENST00000564574 HSPA1LP34931 641 aa28.35■■■□□ 2.13
CLN3-212ENST00000564574 SSH2Q76I76 1423 aa28.35■■■□□ 2.13
CLN3-212ENST00000564574 NSD3Q9BZ95 1437 aa28.35■■■□□ 2.13
CLN3-212ENST00000564574 PXDNQ92626 1479 aa28.34■■■□□ 2.13
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms