RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 INSRP06213 1382 aa17.49■□□□□ 0.39
CLK3-215ENST00000564353 C14orf93Q9H972 538 aaKnown RBP17.48■□□□□ 0.39
CLK3-215ENST00000564353 U2AF1L5P0DN76 240 aaPredicted RBP17.48■□□□□ 0.39
CLK3-215ENST00000564353 U2AF1Q01081 240 aaKnown RBP eCLIP17.48■□□□□ 0.39
CLK3-215ENST00000564353 C8orf34Q49A92 452 aa17.48■□□□□ 0.39
CLK3-215ENST00000564353 VWDEQ8N2E2 1590 aa17.47■□□□□ 0.39
CLK3-215ENST00000564353 GGNBP2Q9H3C7 697 aa17.47■□□□□ 0.39
CLK3-215ENST00000564353 EFCAB6Q5THR3 1501 aa17.47■□□□□ 0.39
CLK3-215ENST00000564353 SRPK2P78362 688 aaKnown RBP17.47■□□□□ 0.39
CLK3-215ENST00000564353 POGZQ7Z3K3 1410 aa17.47■□□□□ 0.39
CLK3-215ENST00000564353 U2SURPO15042 1029 aaKnown RBP17.46■□□□□ 0.39
CLK3-215ENST00000564353 FBLN1P23142 703 aa17.45■□□□□ 0.38
CLK3-215ENST00000564353 MINK1Q8N4C8 1332 aaPredicted RBP17.45■□□□□ 0.38
CLK3-215ENST00000564353 RLBP1P12271 317 aa17.45■□□□□ 0.38
CLK3-215ENST00000564353 FAM161AQ3B820 660 aa17.45■□□□□ 0.38
CLK3-215ENST00000564353 DAXXQ9UER7 740 aaPredicted RBP17.45■□□□□ 0.38
CLK3-215ENST00000564353 NPC1L1Q9UHC9 1359 aa17.45■□□□□ 0.38
CLK3-215ENST00000564353 IDI1Q13907 227 aa17.44■□□□□ 0.38
CLK3-215ENST00000564353 TSR2Q969E8 191 aaKnown RBP17.44■□□□□ 0.38
CLK3-215ENST00000564353 MYOM2P54296 1465 aa17.43■□□□□ 0.38
CLK3-215ENST00000564353 RUNDC1Q96C34 613 aa17.43■□□□□ 0.38
CLK3-215ENST00000564353 FAM69CQ0P6D2 419 aa17.42■□□□□ 0.38
CLK3-215ENST00000564353 SEC24BO95487 1268 aa17.42■□□□□ 0.38
CLK3-215ENST00000564353 CGNL1Q0VF96 1302 aa17.42■□□□□ 0.38
CLK3-215ENST00000564353 KIF1BO60333 1816 aa17.41■□□□□ 0.38
CLK3-215ENST00000564353 PPM1GO15355 546 aaPredicted RBP17.41■□□□□ 0.38
CLK3-215ENST00000564353 FRMPD1Q5SYB0 1578 aa17.41■□□□□ 0.38
CLK3-215ENST00000564353 FBXO31Q5XUX0 539 aaPredicted RBP17.41■□□□□ 0.38
CLK3-215ENST00000564353 MLH3Q9UHC1 1453 aa17.4■□□□□ 0.38
CLK3-215ENST00000564353 RARSP54136 660 aaKnown RBP17.4■□□□□ 0.38
CLK3-215ENST00000564353 POLR3AO14802 1390 aaPredicted RBP17.39■□□□□ 0.37
CLK3-215ENST00000564353 CFAP53Q96M91 514 aa17.39■□□□□ 0.37
CLK3-215ENST00000564353 RTN4Q9NQC3 1192 aaKnown RBP17.39■□□□□ 0.37
CLK3-215ENST00000564353 EVC2Q86UK5 1308 aa17.38■□□□□ 0.37
CLK3-215ENST00000564353 PCDHB15Q9Y5E8 787 aa17.38■□□□□ 0.37
CLK3-215ENST00000564353 YEATS2Q9ULM3 1422 aa17.38■□□□□ 0.37
CLK3-215ENST00000564353 VGFO15240 615 aaPredicted RBP17.37■□□□□ 0.37
CLK3-215ENST00000564353 PRAM1Q96QH2 718 aa17.37■□□□□ 0.37
CLK3-215ENST00000564353 DDRGK1Q96HY6 314 aa17.37■□□□□ 0.37
CLK3-215ENST00000564353 ADGRB3O60242 1522 aa17.37■□□□□ 0.37
CLK3-215ENST00000564353 POGKQ9P215 609 aa17.36■□□□□ 0.37
CLK3-215ENST00000564353 MLECQ14165 292 aa17.36■□□□□ 0.37
CLK3-215ENST00000564353 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.35■□□□□ 0.37
CLK3-215ENST00000564353 NRXN1Q9ULB1 1477 aa17.35■□□□□ 0.37
CLK3-215ENST00000564353 HECW2Q9P2P5 1572 aa17.35■□□□□ 0.37
CLK3-215ENST00000564353 PKNOX2Q96KN3 472 aa17.34■□□□□ 0.37
CLK3-215ENST00000564353 STAG3Q9UJ98 1225 aa17.34■□□□□ 0.37
CLK3-215ENST00000564353 NFKBIBQ15653 356 aa17.34■□□□□ 0.37
CLK3-215ENST00000564353 IL27Q8NEV9 243 aa17.33■□□□□ 0.36
CLK3-215ENST00000564353 NEO1Q92859 1461 aa17.33■□□□□ 0.36
CLK3-215ENST00000564353 ADGRB1O14514 1584 aa17.33■□□□□ 0.36
CLK3-215ENST00000564353 KIAA1210Q9ULL0 1709 aa17.33■□□□□ 0.36
CLK3-215ENST00000564353 PDE3AQ14432 1141 aa17.33■□□□□ 0.36
CLK3-215ENST00000564353 SBNO2Q9Y2G9 1366 aa17.33■□□□□ 0.36
CLK3-215ENST00000564353 A0A1W2PP64 1363 aa17.32■□□□□ 0.36
CLK3-215ENST00000564353 QRICH2Q9H0J4 1663 aa17.32■□□□□ 0.36
CLK3-215ENST00000564353 EXOSC9Q06265 439 aaKnown RBP17.32■□□□□ 0.36
CLK3-215ENST00000564353 ABCC3O15438 1527 aa17.3■□□□□ 0.36
CLK3-215ENST00000564353 FTSJ3Q8IY81 847 aaKnown RBP17.3■□□□□ 0.36
CLK3-215ENST00000564353 CFAP74Q9C0B2 1584 aa17.3■□□□□ 0.36
CLK3-215ENST00000564353 IFT172Q9UG01 1749 aa17.3■□□□□ 0.36
CLK3-215ENST00000564353 WAPLQ7Z5K2 1190 aa17.3■□□□□ 0.36
CLK3-215ENST00000564353 SPRYD3Q8NCJ5 442 aa17.3■□□□□ 0.36
CLK3-215ENST00000564353 CABP1Q9NZU7 370 aa17.3■□□□□ 0.36
CLK3-215ENST00000564353 RIMBP3CA6NJZ7 1639 aa17.3■□□□□ 0.36
CLK3-215ENST00000564353 RIMBP3BA6NNM3 1639 aa17.3■□□□□ 0.36
CLK3-215ENST00000564353 RIMBP3Q9UFD9 1639 aa17.3■□□□□ 0.36
CLK3-215ENST00000564353 LMTK2Q8IWU2 1503 aa17.3■□□□□ 0.36
CLK3-215ENST00000564353 FRAT2O75474 233 aaPredicted RBP17.29■□□□□ 0.36
CLK3-215ENST00000564353 SLKQ9H2G2 1235 aaPredicted RBP17.29■□□□□ 0.36
CLK3-215ENST00000564353 SMC4Q9NTJ3 1288 aa17.29■□□□□ 0.36
CLK3-215ENST00000564353 TULP4Q9NRJ4 1543 aa17.29■□□□□ 0.36
CLK3-215ENST00000564353 FYB1O15117 783 aa17.29■□□□□ 0.36
CLK3-215ENST00000564353 PDZRN3Q9UPQ7 1066 aa17.29■□□□□ 0.36
CLK3-215ENST00000564353 RPGRIP1LQ68CZ1 1315 aa17.29■□□□□ 0.36
CLK3-215ENST00000564353 ANKRD36BQ8N2N9 1353 aa17.28■□□□□ 0.36
CLK3-215ENST00000564353 WDR63Q8IWG1 891 aa17.27■□□□□ 0.35
CLK3-215ENST00000564353 THUMPD2Q9BTF0 503 aaKnown RBP17.27■□□□□ 0.35
CLK3-215ENST00000564353 MAPK8IP3Q9UPT6 1336 aa17.27■□□□□ 0.35
CLK3-215ENST00000564353 DIP2CQ9Y2E4 1556 aa17.27■□□□□ 0.35
CLK3-215ENST00000564353 GLI2P10070 1586 aa17.26■□□□□ 0.35
CLK3-215ENST00000564353 RIPK4P57078 832 aa17.26■□□□□ 0.35
CLK3-215ENST00000564353 SHPRHQ149N8 1683 aa17.26■□□□□ 0.35
CLK3-215ENST00000564353 ITPRIPQ8IWB1 547 aa17.26■□□□□ 0.35
CLK3-215ENST00000564353 SIGLEC1Q9BZZ2 1709 aa17.26■□□□□ 0.35
CLK3-215ENST00000564353 MYH16Q9H6N6 1097 aa17.26■□□□□ 0.35
CLK3-215ENST00000564353 USP19O94966 1318 aa17.26■□□□□ 0.35
CLK3-215ENST00000564353 HMOX1P09601 288 aa17.26■□□□□ 0.35
CLK3-215ENST00000564353 TMPOP42166 694 aaKnown RBP17.26■□□□□ 0.35
CLK3-215ENST00000564353 CDK19Q9BWU1 502 aa17.26■□□□□ 0.35
CLK3-215ENST00000564353 PPLO60437 1756 aa17.25■□□□□ 0.35
CLK3-215ENST00000564353 ELL2O00472 640 aaPredicted RBP17.25■□□□□ 0.35
CLK3-215ENST00000564353 SSH1Q8WYL5 1049 aa17.25■□□□□ 0.35
CLK3-215ENST00000564353 PHF23Q9BUL5 403 aaPredicted RBP17.25■□□□□ 0.35
CLK3-215ENST00000564353 TRIM35Q9UPQ4 493 aa17.25■□□□□ 0.35
CLK3-215ENST00000564353 TSPOAP1O95153 1857 aa17.24■□□□□ 0.35
CLK3-215ENST00000564353 NCKAP5LQ9HCH0 1330 aa17.24■□□□□ 0.35
CLK3-215ENST00000564353 SETBP1Q9Y6X0 1596 aa17.23■□□□□ 0.35
CLK3-215ENST00000564353 IQSEC2Q5JU85 1478 aa17.23■□□□□ 0.35
CLK3-215ENST00000564353 ZRANB1Q9UGI0 708 aa17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms