RNA–Protein interactions for RNA: ENST00000563455.1

SMPD3-205, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 4

Gene SMPD3, Length 546 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-205ENST00000563455 KTN1Q86UP2 1357 aaKnown RBP19.08■□□□□ 0.65
SMPD3-205ENST00000563455 ADGRF5Q8IZF2 1346 aa19.08■□□□□ 0.65
SMPD3-205ENST00000563455 C11orf95C9JLR9 678 aaPredicted RBP19.08■□□□□ 0.64
SMPD3-205ENST00000563455 ADAMTS13Q76LX8 1427 aa19.08■□□□□ 0.64
SMPD3-205ENST00000563455 JCADQ9P266 1359 aa19.07■□□□□ 0.64
SMPD3-205ENST00000563455 SBNO2Q9Y2G9 1366 aa19.07■□□□□ 0.64
SMPD3-205ENST00000563455 XIRP1Q702N8 1843 aaKnown RBP19.07■□□□□ 0.64
SMPD3-205ENST00000563455 TESK2Q96S53 571 aa19.06■□□□□ 0.64
SMPD3-205ENST00000563455 PPLO60437 1756 aa19.06■□□□□ 0.64
SMPD3-205ENST00000563455 CHD2O14647 1828 aaKnown RBP19.04■□□□□ 0.64
SMPD3-205ENST00000563455 NEXMIFQ5QGS0 1516 aa19.04■□□□□ 0.64
SMPD3-205ENST00000563455 CFAP70Q5T0N1 1121 aa19.03■□□□□ 0.64
SMPD3-205ENST00000563455 PUS7Q96PZ0 661 aaKnown RBP19.03■□□□□ 0.64
SMPD3-205ENST00000563455 ROBO1Q9Y6N7 1651 aa19.03■□□□□ 0.64
SMPD3-205ENST00000563455 SPATA31A6Q5VVP1 1343 aa19.02■□□□□ 0.64
SMPD3-205ENST00000563455 RGS17Q9UGC6 210 aaPredicted RBP19.02■□□□□ 0.64
SMPD3-205ENST00000563455 DCCP43146 1447 aa18.99■□□□□ 0.63
SMPD3-205ENST00000563455 MYO5BQ9ULV0 1848 aa18.98■□□□□ 0.63
SMPD3-205ENST00000563455 MEX3CQ5U5Q3 659 aaKnown RBP18.98■□□□□ 0.63
SMPD3-205ENST00000563455 PRKRIP1Q9H875 184 aaPredicted RBP18.98■□□□□ 0.63
SMPD3-205ENST00000563455 CENPJQ9HC77 1338 aaPredicted RBP18.97■□□□□ 0.63
SMPD3-205ENST00000563455 ZNF772Q68DY9 489 aaPredicted RBP18.96■□□□□ 0.63
SMPD3-205ENST00000563455 PTPRUQ92729 1446 aa18.95■□□□□ 0.62
SMPD3-205ENST00000563455 RALBP1Q15311 655 aa18.95■□□□□ 0.62
SMPD3-205ENST00000563455 POTEAQ6S8J7 498 aa18.95■□□□□ 0.62
SMPD3-205ENST00000563455 BRINP3Q76B58 766 aa18.95■□□□□ 0.62
SMPD3-205ENST00000563455 LRRC59Q96AG4 307 aaKnown RBP18.95■□□□□ 0.62
SMPD3-205ENST00000563455 ADGRB1O14514 1584 aa18.94■□□□□ 0.62
SMPD3-205ENST00000563455 METP08581 1390 aa18.93■□□□□ 0.62
SMPD3-205ENST00000563455 POLR3GLQ9BT43 218 aa18.93■□□□□ 0.62
SMPD3-205ENST00000563455 PHLPP1O60346 1717 aa18.92■□□□□ 0.62
SMPD3-205ENST00000563455 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.89■□□□□ 0.61
SMPD3-205ENST00000563455 SIRT1Q96EB6 747 aa18.89■□□□□ 0.61
SMPD3-205ENST00000563455 AHDC1Q5TGY3 1603 aaPredicted RBP18.87■□□□□ 0.61
SMPD3-205ENST00000563455 ADGRL3Q9HAR2 1447 aa18.87■□□□□ 0.61
SMPD3-205ENST00000563455 NPC1L1Q9UHC9 1359 aa18.86■□□□□ 0.61
SMPD3-205ENST00000563455 NINLQ9Y2I6 1382 aa18.86■□□□□ 0.61
SMPD3-205ENST00000563455 EVC2Q86UK5 1308 aa18.86■□□□□ 0.61
SMPD3-205ENST00000563455 TRAK1Q9UPV9 953 aa18.86■□□□□ 0.61
SMPD3-205ENST00000563455 MST1RQ04912 1400 aa18.85■□□□□ 0.61
SMPD3-205ENST00000563455 NUTM2BA6NNL0 878 aaPredicted RBP18.85■□□□□ 0.61
SMPD3-205ENST00000563455 NUTM2EB1AL46 878 aaPredicted RBP18.85■□□□□ 0.61
SMPD3-205ENST00000563455 PER1O15534 1290 aaPredicted RBP18.85■□□□□ 0.61
SMPD3-205ENST00000563455 NUTM2AQ8IVF1 878 aaPredicted RBP18.85■□□□□ 0.61
SMPD3-205ENST00000563455 COL16A1Q07092 1604 aaPredicted RBP18.85■□□□□ 0.61
SMPD3-205ENST00000563455 YTHDC2Q9H6S0 1430 aaKnown RBP18.84■□□□□ 0.61
SMPD3-205ENST00000563455 ABCC11Q96J66 1382 aa18.84■□□□□ 0.61
SMPD3-205ENST00000563455 KNSTRNQ9Y448 316 aa18.84■□□□□ 0.61
SMPD3-205ENST00000563455 DLC1Q96QB1 1528 aa18.84■□□□□ 0.61
SMPD3-205ENST00000563455 XRN1Q8IZH2 1706 aaKnown RBP18.83■□□□□ 0.61
SMPD3-205ENST00000563455 LRPPRCP42704 1394 aaKnown RBP18.83■□□□□ 0.61
SMPD3-205ENST00000563455 NRXN3Q9Y4C0 1643 aa18.83■□□□□ 0.61
SMPD3-205ENST00000563455 RXRBP28702 533 aa18.83■□□□□ 0.6
SMPD3-205ENST00000563455 TMEM132EQ6IEE7 984 aa18.83■□□□□ 0.6
SMPD3-205ENST00000563455 PTCH1Q13635 1447 aa18.83■□□□□ 0.6
SMPD3-205ENST00000563455 PANK3Q9H999 370 aa18.82■□□□□ 0.6
SMPD3-205ENST00000563455 MYBBP1AQ9BQG0 1328 aaKnown RBP18.81■□□□□ 0.6
SMPD3-205ENST00000563455 ASXL1Q8IXJ9 1541 aa18.81■□□□□ 0.6
SMPD3-205ENST00000563455 YTHDC1Q96MU7 727 aaKnown RBP18.81■□□□□ 0.6
SMPD3-205ENST00000563455 BRD4O60885 1362 aaPredicted RBP18.8■□□□□ 0.6
SMPD3-205ENST00000563455 POGKQ9P215 609 aa18.79■□□□□ 0.6
SMPD3-205ENST00000563455 MRS2Q9HD23 443 aa18.78■□□□□ 0.6
SMPD3-205ENST00000563455 PARD3Q8TEW0 1356 aa18.78■□□□□ 0.6
SMPD3-205ENST00000563455 C1orf167Q5SNV9 1468 aa18.77■□□□□ 0.6
SMPD3-205ENST00000563455 NLRP13Q86W25 1043 aa18.77■□□□□ 0.6
SMPD3-205ENST00000563455 ATAD2Q6PL18 1390 aa18.77■□□□□ 0.6
SMPD3-205ENST00000563455 ROBO2Q9HCK4 1378 aa18.77■□□□□ 0.6
SMPD3-205ENST00000563455 TECPR2O15040 1411 aa18.76■□□□□ 0.59
SMPD3-205ENST00000563455 SHPRHQ149N8 1683 aa18.76■□□□□ 0.59
SMPD3-205ENST00000563455 LRP6O75581 1613 aa18.75■□□□□ 0.59
SMPD3-205ENST00000563455 TMC1Q8TDI8 760 aa18.75■□□□□ 0.59
SMPD3-205ENST00000563455 NGLY1Q96IV0 654 aa18.75■□□□□ 0.59
SMPD3-205ENST00000563455 ORAI2Q96SN7 254 aa18.75■□□□□ 0.59
SMPD3-205ENST00000563455 AFF2P51816 1311 aa18.74■□□□□ 0.59
SMPD3-205ENST00000563455 ESCO1Q5FWF5 840 aa18.74■□□□□ 0.59
SMPD3-205ENST00000563455 C8orf37Q96NL8 207 aa18.74■□□□□ 0.59
SMPD3-205ENST00000563455 ARHGEF28Q8N1W1 1705 aaKnown RBP18.74■□□□□ 0.59
SMPD3-205ENST00000563455 SOS2Q07890 1332 aaPredicted RBP18.74■□□□□ 0.59
SMPD3-205ENST00000563455 QRICH2Q9H0J4 1663 aa18.73■□□□□ 0.59
SMPD3-205ENST00000563455 PNPLA6Q8IY17 1366 aa18.73■□□□□ 0.59
SMPD3-205ENST00000563455 DDX17Q92841 729 aaKnown RBP18.73■□□□□ 0.59
SMPD3-205ENST00000563455 QTRT2Q9H974 415 aaKnown RBP18.73■□□□□ 0.59
SMPD3-205ENST00000563455 NPHP3Q7Z494 1330 aa18.73■□□□□ 0.59
SMPD3-205ENST00000563455 INSRP06213 1382 aa18.72■□□□□ 0.59
SMPD3-205ENST00000563455 RBM6P78332 1123 aaKnown RBP18.72■□□□□ 0.59
SMPD3-205ENST00000563455 PRAM1Q96QH2 718 aa18.72■□□□□ 0.59
SMPD3-205ENST00000563455 STK26Q9P289 416 aa18.72■□□□□ 0.59
SMPD3-205ENST00000563455 ADAMTS2O95450 1211 aa18.69■□□□□ 0.58
SMPD3-205ENST00000563455 AMER1Q5JTC6 1135 aaPredicted RBP18.69■□□□□ 0.58
SMPD3-205ENST00000563455 TERF2IPQ9NYB0 399 aa18.69■□□□□ 0.58
SMPD3-205ENST00000563455 CDK12Q9NYV4 1490 aaPredicted RBP18.69■□□□□ 0.58
SMPD3-205ENST00000563455 NSD2O96028 1365 aa18.68■□□□□ 0.58
SMPD3-205ENST00000563455 NHSL1Q5SYE7 1610 aa18.68■□□□□ 0.58
SMPD3-205ENST00000563455 UPF1Q92900 1129 aaKnown RBP eCLIP18.67■□□□□ 0.58
SMPD3-205ENST00000563455 ANKRD36BQ8N2N9 1353 aa18.67■□□□□ 0.58
SMPD3-205ENST00000563455 SETD1AO15047 1707 aaKnown RBP18.66■□□□□ 0.58
SMPD3-205ENST00000563455 FOXO3O43524 673 aa18.66■□□□□ 0.58
SMPD3-205ENST00000563455 SRPK2P78362 688 aaKnown RBP18.66■□□□□ 0.58
SMPD3-205ENST00000563455 WAPLQ7Z5K2 1190 aa18.66■□□□□ 0.58
SMPD3-205ENST00000563455 TRPC5Q9UL62 973 aaPredicted RBP18.66■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms