RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 CDC42BPGQ6DT37 1551 aa14.05□□□□□ -0.16
CLK3-208ENST00000562626 ROCK2O75116 1388 aaKnown RBP14.04□□□□□ -0.16
CLK3-208ENST00000562626 ROBO1Q9Y6N7 1651 aa14.04□□□□□ -0.16
CLK3-208ENST00000562626 PHF23Q9BUL5 403 aaPredicted RBP14.03□□□□□ -0.16
CLK3-208ENST00000562626 SAFB2Q14151 953 aaKnown RBP eCLIP14.02□□□□□ -0.17
CLK3-208ENST00000562626 PRAM1Q96QH2 718 aa14.02□□□□□ -0.17
CLK3-208ENST00000562626 TIMELESSQ9UNS1 1208 aa14.02□□□□□ -0.17
CLK3-208ENST00000562626 NCOA3Q9Y6Q9 1424 aa14.01□□□□□ -0.17
CLK3-208ENST00000562626 MED1Q15648 1581 aaPredicted RBP14□□□□□ -0.17
CLK3-208ENST00000562626 TOPAZ1Q8N9V7 1692 aa14□□□□□ -0.17
CLK3-208ENST00000562626 TULP4Q9NRJ4 1543 aa14□□□□□ -0.17
CLK3-208ENST00000562626 MSH6P52701 1360 aa13.99□□□□□ -0.17
CLK3-208ENST00000562626 UBAP1LF5GYI3 381 aa13.99□□□□□ -0.17
CLK3-208ENST00000562626 MST1RQ04912 1400 aa13.98□□□□□ -0.17
CLK3-208ENST00000562626 ITSN1Q15811 1721 aa13.98□□□□□ -0.17
CLK3-208ENST00000562626 NHSL1Q5SYE7 1610 aa13.98□□□□□ -0.17
CLK3-208ENST00000562626 C14orf37Q86TY3 774 aa13.98□□□□□ -0.17
CLK3-208ENST00000562626 SIRT1Q96EB6 747 aa13.98□□□□□ -0.17
CLK3-208ENST00000562626 DCCP43146 1447 aa13.98□□□□□ -0.17
CLK3-208ENST00000562626 MINK1Q8N4C8 1332 aaPredicted RBP13.96□□□□□ -0.17
CLK3-208ENST00000562626 HIRIP3Q9BW71 556 aaPredicted RBP13.96□□□□□ -0.17
CLK3-208ENST00000562626 CARD11Q9BXL7 1154 aa13.96□□□□□ -0.17
CLK3-208ENST00000562626 C19orf44Q9H6X5 657 aa13.96□□□□□ -0.17
CLK3-208ENST00000562626 PHLPP1O60346 1717 aa13.95□□□□□ -0.18
CLK3-208ENST00000562626 POGKQ9P215 609 aa13.95□□□□□ -0.18
CLK3-208ENST00000562626 C1orf167Q5SNV9 1468 aa13.93□□□□□ -0.18
CLK3-208ENST00000562626 CENPJQ9HC77 1338 aaPredicted RBP13.93□□□□□ -0.18
CLK3-208ENST00000562626 USP47Q96K76 1375 aa13.93□□□□□ -0.18
CLK3-208ENST00000562626 ATP7BP35670 1465 aa13.93□□□□□ -0.18
CLK3-208ENST00000562626 KIF1AQ12756 1690 aa13.92□□□□□ -0.18
CLK3-208ENST00000562626 AKAP12Q02952 1782 aa13.92□□□□□ -0.18
CLK3-208ENST00000562626 NUTM2FA1L443 756 aa13.92□□□□□ -0.18
CLK3-208ENST00000562626 PIP4K2BP78356 416 aa13.92□□□□□ -0.18
CLK3-208ENST00000562626 COL16A1Q07092 1604 aaPredicted RBP13.92□□□□□ -0.18
CLK3-208ENST00000562626 MYOM1P52179 1685 aa13.91□□□□□ -0.18
CLK3-208ENST00000562626 PRR36Q9H6K5 1346 aa13.91□□□□□ -0.18
CLK3-208ENST00000562626 ATF3P18847 181 aa13.91□□□□□ -0.18
CLK3-208ENST00000562626 CADPS2Q86UW7 1296 aa13.9□□□□□ -0.18
CLK3-208ENST00000562626 SLAIN2Q9P270 581 aa13.9□□□□□ -0.18
CLK3-208ENST00000562626 EIF3AQ14152 1382 aaKnown RBP13.9□□□□□ -0.18
CLK3-208ENST00000562626 TRPM3Q9HCF6 1732 aaPredicted RBP13.9□□□□□ -0.18
CLK3-208ENST00000562626 AHDC1Q5TGY3 1603 aaPredicted RBP13.9□□□□□ -0.19
CLK3-208ENST00000562626 ST20-MTHFSA0A0A6YYL1 179 aa13.89□□□□□ -0.19
CLK3-208ENST00000562626 TOM1O60784 492 aa13.89□□□□□ -0.19
CLK3-208ENST00000562626 TESK2Q96S53 571 aa13.89□□□□□ -0.19
CLK3-208ENST00000562626 ORAI2Q96SN7 254 aa13.89□□□□□ -0.19
CLK3-208ENST00000562626 SCAF1Q9H7N4 1312 aaKnown RBP13.89□□□□□ -0.19
CLK3-208ENST00000562626 SBNO2Q9Y2G9 1366 aa13.88□□□□□ -0.19
CLK3-208ENST00000562626 WASLO00401 505 aaPredicted RBP13.88□□□□□ -0.19
CLK3-208ENST00000562626 HSPA1LP34931 641 aa13.88□□□□□ -0.19
CLK3-208ENST00000562626 BRINP3Q76B58 766 aa13.87□□□□□ -0.19
CLK3-208ENST00000562626 DDX17Q92841 729 aaKnown RBP13.87□□□□□ -0.19
CLK3-208ENST00000562626 CDK19Q9BWU1 502 aa13.87□□□□□ -0.19
CLK3-208ENST00000562626 MON2Q7Z3U7 1717 aa13.87□□□□□ -0.19
CLK3-208ENST00000562626 ANKARQ7Z5J8 1434 aa13.86□□□□□ -0.19
CLK3-208ENST00000562626 CABP2Q9NPB3 220 aa13.85□□□□□ -0.19
CLK3-208ENST00000562626 MARF1Q9Y4F3 1742 aaKnown RBP13.84□□□□□ -0.19
CLK3-208ENST00000562626 NRKQ7Z2Y5 1582 aa13.84□□□□□ -0.19
CLK3-208ENST00000562626 HSPA5P11021 654 aaKnown RBP13.84□□□□□ -0.19
CLK3-208ENST00000562626 PXDNQ92626 1479 aa13.84□□□□□ -0.19
CLK3-208ENST00000562626 ALS2Q96Q42 1657 aa13.84□□□□□ -0.19
CLK3-208ENST00000562626 ABCA3Q99758 1704 aa13.84□□□□□ -0.19
CLK3-208ENST00000562626 CRYBG1Q9Y4K1 1723 aa13.84□□□□□ -0.19
CLK3-208ENST00000562626 SHPRHQ149N8 1683 aa13.83□□□□□ -0.2
CLK3-208ENST00000562626 NUDT16Q96DE0 195 aaKnown RBP13.82□□□□□ -0.2
CLK3-208ENST00000562626 ESCO1Q5FWF5 840 aa13.81□□□□□ -0.2
CLK3-208ENST00000562626 PPIP5K1Q6PFW1 1433 aa13.81□□□□□ -0.2
CLK3-208ENST00000562626 CD163L1Q9NR16 1453 aa13.8□□□□□ -0.2
CLK3-208ENST00000562626 SRPK2P78362 688 aaKnown RBP13.8□□□□□ -0.2
CLK3-208ENST00000562626 PMFBP1Q8TBY8 1022 aa13.8□□□□□ -0.2
CLK3-208ENST00000562626 EVC2Q86UK5 1308 aa13.8□□□□□ -0.2
CLK3-208ENST00000562626 C11orf95C9JLR9 678 aaPredicted RBP13.79□□□□□ -0.2
CLK3-208ENST00000562626 EIF4G2P78344 907 aaKnown RBP eCLIP13.79□□□□□ -0.2
CLK3-208ENST00000562626 XPCQ01831 940 aaPredicted RBP13.79□□□□□ -0.2
CLK3-208ENST00000562626 PHF8Q9UPP1 1060 aa13.79□□□□□ -0.2
CLK3-208ENST00000562626 COL22A1Q8NFW1 1626 aaPredicted RBP13.79□□□□□ -0.2
CLK3-208ENST00000562626 PIK3C2AO00443 1686 aa13.79□□□□□ -0.2
CLK3-208ENST00000562626 FOXO3O43524 673 aa13.77□□□□□ -0.21
CLK3-208ENST00000562626 KIF20BQ96Q89 1820 aa13.77□□□□□ -0.21
CLK3-208ENST00000562626 PHRF1Q9P1Y6 1649 aaKnown RBP13.76□□□□□ -0.21
CLK3-208ENST00000562626 POLR3AO14802 1390 aaPredicted RBP13.76□□□□□ -0.21
CLK3-208ENST00000562626 SOS2Q07890 1332 aaPredicted RBP13.76□□□□□ -0.21
CLK3-208ENST00000562626 ACEP12821 1306 aa13.75□□□□□ -0.21
CLK3-208ENST00000562626 CABP1Q9NZU7 370 aa13.75□□□□□ -0.21
CLK3-208ENST00000562626 CCDC61Q9Y6R9 512 aa13.75□□□□□ -0.21
CLK3-208ENST00000562626 ATAD2Q6PL18 1390 aa13.74□□□□□ -0.21
CLK3-208ENST00000562626 PLEKHG3A1L390 1219 aa13.74□□□□□ -0.21
CLK3-208ENST00000562626 USP54Q70EL1 1684 aa13.74□□□□□ -0.21
CLK3-208ENST00000562626 CPSF1Q10570 1443 aaKnown RBP13.73□□□□□ -0.21
CLK3-208ENST00000562626 TMF1P82094 1093 aa13.73□□□□□ -0.21
CLK3-208ENST00000562626 SLC12A5Q9H2X9 1139 aa13.73□□□□□ -0.21
CLK3-208ENST00000562626 LRP6O75581 1613 aa13.72□□□□□ -0.21
CLK3-208ENST00000562626 NPHP3Q7Z494 1330 aa13.72□□□□□ -0.21
CLK3-208ENST00000562626 KRT28Q7Z3Y7 464 aa13.72□□□□□ -0.21
CLK3-208ENST00000562626 USP6P35125 1406 aa13.72□□□□□ -0.21
CLK3-208ENST00000562626 SSH2Q76I76 1423 aa13.72□□□□□ -0.21
CLK3-208ENST00000562626 PNPLA6Q8IY17 1366 aa13.71□□□□□ -0.21
CLK3-208ENST00000562626 ANKRD26Q9UPS8 1709 aa13.71□□□□□ -0.21
CLK3-208ENST00000562626 NGDNQ8NEJ9 315 aaKnown RBP13.71□□□□□ -0.21
CLK3-208ENST00000562626 TNS3Q68CZ2 1445 aa13.71□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 78.2 ms