RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 FRAT2O75474 233 aaPredicted RBP14.55□□□□□ -0.08
CUX1-218ENST00000560541 SEC24BO95487 1268 aa14.55□□□□□ -0.08
CUX1-218ENST00000560541 CLUAP1Q96AJ1 413 aa14.55□□□□□ -0.08
CUX1-218ENST00000560541 NSD3Q9BZ95 1437 aa14.54□□□□□ -0.08
CUX1-218ENST00000560541 DEPDC5O75140 1603 aa14.53□□□□□ -0.08
CUX1-218ENST00000560541 HSP90AA1P07900 732 aaKnown RBP14.53□□□□□ -0.08
CUX1-218ENST00000560541 NUTM2DQ5VT03 806 aaPredicted RBP14.53□□□□□ -0.08
CUX1-218ENST00000560541 MAP3K4Q9Y6R4 1608 aa14.53□□□□□ -0.08
CUX1-218ENST00000560541 CGNL1Q0VF96 1302 aa14.53□□□□□ -0.08
CUX1-218ENST00000560541 NOS1P29475 1434 aa14.52□□□□□ -0.08
CUX1-218ENST00000560541 TCP11L2Q8N4U5 519 aa14.52□□□□□ -0.08
CUX1-218ENST00000560541 ADGRL1O94910 1474 aa14.52□□□□□ -0.08
CUX1-218ENST00000560541 UHRF1BP1LA0JNW5 1464 aa14.51□□□□□ -0.09
CUX1-218ENST00000560541 PDE3AQ14432 1141 aa14.51□□□□□ -0.09
CUX1-218ENST00000560541 RLBP1P12271 317 aa14.51□□□□□ -0.09
CUX1-218ENST00000560541 CFAP65Q6ZU64 1925 aaKnown RBP14.51□□□□□ -0.09
CUX1-218ENST00000560541 RRAGDQ9NQL2 400 aaPredicted RBP14.5□□□□□ -0.09
CUX1-218ENST00000560541 POLR3AO14802 1390 aaPredicted RBP14.5□□□□□ -0.09
CUX1-218ENST00000560541 USP19O94966 1318 aa14.5□□□□□ -0.09
CUX1-218ENST00000560541 MTHFSP49914 203 aa14.5□□□□□ -0.09
CUX1-218ENST00000560541 GGT6Q6P531 493 aa14.5□□□□□ -0.09
CUX1-218ENST00000560541 RARSP54136 660 aaKnown RBP14.49□□□□□ -0.09
CUX1-218ENST00000560541 MYOM2P54296 1465 aa14.49□□□□□ -0.09
CUX1-218ENST00000560541 VWDEQ8N2E2 1590 aa14.49□□□□□ -0.09
CUX1-218ENST00000560541 KIAA1210Q9ULL0 1709 aa14.49□□□□□ -0.09
CUX1-218ENST00000560541 RUNDC1Q96C34 613 aa14.49□□□□□ -0.09
CUX1-218ENST00000560541 INO80Q9ULG1 1556 aaPredicted RBP14.49□□□□□ -0.09
CUX1-218ENST00000560541 PCDHB15Q9Y5E8 787 aa14.48□□□□□ -0.09
CUX1-218ENST00000560541 MROH2AA6NES4 1674 aa14.48□□□□□ -0.09
CUX1-218ENST00000560541 SAFB2Q14151 953 aaKnown RBP eCLIP14.48□□□□□ -0.09
CUX1-218ENST00000560541 SLKQ9H2G2 1235 aaPredicted RBP14.48□□□□□ -0.09
CUX1-218ENST00000560541 MROH1Q8NDA8 1641 aa14.48□□□□□ -0.09
CUX1-218ENST00000560541 RRP9O43818 475 aaKnown RBP14.48□□□□□ -0.09
CUX1-218ENST00000560541 KIF1BO60333 1816 aa14.47□□□□□ -0.09
CUX1-218ENST00000560541 NGEFQ8N5V2 710 aa14.46□□□□□ -0.09
CUX1-218ENST00000560541 EFCAB6Q5THR3 1501 aa14.45□□□□□ -0.1
CUX1-218ENST00000560541 U2AF1L5P0DN76 240 aaPredicted RBP14.45□□□□□ -0.1
CUX1-218ENST00000560541 U2AF1Q01081 240 aaKnown RBP eCLIP14.45□□□□□ -0.15e-6■□□□□ 11.2
CUX1-218ENST00000560541 MAPK8IP3Q9UPT6 1336 aa14.45□□□□□ -0.1
CUX1-218ENST00000560541 ARAP3Q8WWN8 1544 aa14.45□□□□□ -0.1
CUX1-218ENST00000560541 PPRC1Q5VV67 1664 aaKnown RBP14.45□□□□□ -0.1
CUX1-218ENST00000560541 ARXQ96QS3 562 aa14.44□□□□□ -0.1
CUX1-218ENST00000560541 ABCA9Q8IUA7 1624 aa14.43□□□□□ -0.1
CUX1-218ENST00000560541 SBNO2Q9Y2G9 1366 aa14.43□□□□□ -0.1
CUX1-218ENST00000560541 C14orf93Q9H972 538 aaKnown RBP14.43□□□□□ -0.1
CUX1-218ENST00000560541 PDZRN3Q9UPQ7 1066 aa14.43□□□□□ -0.1
CUX1-218ENST00000560541 SHPRHQ149N8 1683 aa14.43□□□□□ -0.1
CUX1-218ENST00000560541 TSR2Q969E8 191 aaKnown RBP14.43□□□□□ -0.1
CUX1-218ENST00000560541 CABP2Q9NPB3 220 aa14.43□□□□□ -0.1
CUX1-218ENST00000560541 CFAP53Q96M91 514 aa14.42□□□□□ -0.1
CUX1-218ENST00000560541 NINLQ9Y2I6 1382 aa14.42□□□□□ -0.1
CUX1-218ENST00000560541 PMFBP1Q8TBY8 1022 aa14.42□□□□□ -0.1
CUX1-218ENST00000560541 NRXN1Q9ULB1 1477 aa14.41□□□□□ -0.1
CUX1-218ENST00000560541 IFT172Q9UG01 1749 aa14.41□□□□□ -0.1
CUX1-218ENST00000560541 SPRYD3Q8NCJ5 442 aa14.41□□□□□ -0.1
CUX1-218ENST00000560541 U2SURPO15042 1029 aaKnown RBP14.4□□□□□ -0.1
CUX1-218ENST00000560541 NPATQ14207 1427 aa14.4□□□□□ -0.1
CUX1-218ENST00000560541 WDR63Q8IWG1 891 aa14.4□□□□□ -0.1
CUX1-218ENST00000560541 PHF23Q9BUL5 403 aaPredicted RBP14.4□□□□□ -0.1
CUX1-218ENST00000560541 IQSEC2Q5JU85 1478 aa14.4□□□□□ -0.1
CUX1-218ENST00000560541 PNNQ9H307 717 aaKnown RBP14.4□□□□□ -0.1
CUX1-218ENST00000560541 FTSJ3Q8IY81 847 aaKnown RBP14.4□□□□□ -0.1
CUX1-218ENST00000560541 STK26Q9P289 416 aa14.4□□□□□ -0.1
CUX1-218ENST00000560541 NEURL4Q96JN8 1562 aa14.39□□□□□ -0.11
CUX1-218ENST00000560541 QRICH2Q9H0J4 1663 aa14.39□□□□□ -0.11
CUX1-218ENST00000560541 ASXL2Q76L83 1435 aa14.39□□□□□ -0.11
CUX1-218ENST00000560541 MYO3AQ8NEV4 1616 aa14.39□□□□□ -0.11
CUX1-218ENST00000560541 BECN1Q14457 450 aa14.39□□□□□ -0.11
CUX1-218ENST00000560541 POGKQ9P215 609 aa14.39□□□□□ -0.11
CUX1-218ENST00000560541 KIDINS220Q9ULH0 1771 aa14.39□□□□□ -0.11
CUX1-218ENST00000560541 ADGRB3O60242 1522 aa14.39□□□□□ -0.11
CUX1-218ENST00000560541 ZNF518AQ6AHZ1 1483 aa14.39□□□□□ -0.11
CUX1-218ENST00000560541 MYH16Q9H6N6 1097 aa14.38□□□□□ -0.11
CUX1-218ENST00000560541 UPF2Q9HAU5 1272 aaKnown RBP14.38□□□□□ -0.11
CUX1-218ENST00000560541 NLRP1Q9C000 1473 aa14.38□□□□□ -0.11
CUX1-218ENST00000560541 GGNBP2Q9H3C7 697 aa14.38□□□□□ -0.11
CUX1-218ENST00000560541 VIRMAQ69YN4 1812 aaKnown RBP14.37□□□□□ -0.11
CUX1-218ENST00000560541 RWDD1Q9H446 243 aaPredicted RBP14.37□□□□□ -0.11
CUX1-218ENST00000560541 SMC4Q9NTJ3 1288 aa14.37□□□□□ -0.11
CUX1-218ENST00000560541 EVC2Q86UK5 1308 aa14.37□□□□□ -0.11
CUX1-218ENST00000560541 ADGRB1O14514 1584 aa14.37□□□□□ -0.11
CUX1-218ENST00000560541 MVPQ14764 893 aaKnown RBP14.36□□□□□ -0.11
CUX1-218ENST00000560541 EXOSC9Q06265 439 aaKnown RBP14.36□□□□□ -0.11
CUX1-218ENST00000560541 PAXIP1Q6ZW49 1069 aaPredicted RBP14.36□□□□□ -0.11
CUX1-218ENST00000560541 ZKSCAN2Q63HK3 967 aa14.36□□□□□ -0.11
CUX1-218ENST00000560541 SETBP1Q9Y6X0 1596 aa14.36□□□□□ -0.11
CUX1-218ENST00000560541 SRPK2P78362 688 aaKnown RBP14.35□□□□□ -0.11
CUX1-218ENST00000560541 DZIP1LQ8IYY4 767 aaKnown RBP14.35□□□□□ -0.11
CUX1-218ENST00000560541 BBXQ8WY36 941 aaPredicted RBP14.35□□□□□ -0.11
CUX1-218ENST00000560541 CHMP4BQ9H444 224 aaKnown RBP14.35□□□□□ -0.11
CUX1-218ENST00000560541 CCDC27Q2M243 656 aa14.35□□□□□ -0.11
CUX1-218ENST00000560541 TBC1D32Q96NH3 1257 aa14.35□□□□□ -0.11
CUX1-218ENST00000560541 TBC1D2Q9BYX2 928 aa14.35□□□□□ -0.11
CUX1-218ENST00000560541 ITPRIPQ8IWB1 547 aa14.34□□□□□ -0.11
CUX1-218ENST00000560541 KLHL34Q8N239 644 aa14.34□□□□□ -0.11
CUX1-218ENST00000560541 ANKRD36BQ8N2N9 1353 aa14.33□□□□□ -0.12
CUX1-218ENST00000560541 MFAP1P55081 439 aaKnown RBP14.33□□□□□ -0.12
CUX1-218ENST00000560541 PPLO60437 1756 aa14.33□□□□□ -0.12
CUX1-218ENST00000560541 ZC3H13Q5T200 1668 aaKnown RBP14.33□□□□□ -0.12
CUX1-218ENST00000560541 TRIM27P14373 513 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms