RNA–Protein interactions for RNA: ENST00000560299.1

SPG11-221, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 437 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-221ENST00000560299 ALKQ9UM73 1620 aa9.01□□□□□ -0.97
SPG11-221ENST00000560299 STRCP1A6NGW2 1772 aa9□□□□□ -0.97
SPG11-221ENST00000560299 HSPA5P11021 654 aaKnown RBP9□□□□□ -0.97
SPG11-221ENST00000560299 NBPF1Q3BBV0 1214 aa9□□□□□ -0.97
SPG11-221ENST00000560299 CFAP70Q5T0N1 1121 aa9□□□□□ -0.97
SPG11-221ENST00000560299 NUTM2DQ5VT03 806 aaPredicted RBP9□□□□□ -0.97
SPG11-221ENST00000560299 BCANQ96GW7 911 aa9□□□□□ -0.97
SPG11-221ENST00000560299 SLC26A8Q96RN1 970 aa9□□□□□ -0.97
SPG11-221ENST00000560299 EIF3AQ14152 1382 aaKnown RBP8.99□□□□□ -0.97
SPG11-221ENST00000560299 USP47Q96K76 1375 aa8.99□□□□□ -0.97
SPG11-221ENST00000560299 FAM135BQ49AJ0 1406 aa8.99□□□□□ -0.97
SPG11-221ENST00000560299 TOM1O60784 492 aa8.99□□□□□ -0.97
SPG11-221ENST00000560299 METP08581 1390 aa8.99□□□□□ -0.97
SPG11-221ENST00000560299 KCNA4P22459 653 aa8.98□□□□□ -0.97
SPG11-221ENST00000560299 C19orf44Q9H6X5 657 aa8.98□□□□□ -0.97
SPG11-221ENST00000560299 LRPPRCP42704 1394 aaKnown RBP8.98□□□□□ -0.97
SPG11-221ENST00000560299 DLC1Q96QB1 1528 aa8.97□□□□□ -0.97
SPG11-221ENST00000560299 AMOTL2Q9Y2J4 779 aa8.97□□□□□ -0.97
SPG11-221ENST00000560299 TMEM94Q12767 1356 aa8.97□□□□□ -0.97
SPG11-221ENST00000560299 PTPRUQ92729 1446 aa8.97□□□□□ -0.97
SPG11-221ENST00000560299 ST20-MTHFSA0A0A6YYL1 179 aa8.96□□□□□ -0.98
SPG11-221ENST00000560299 AKT1S1Q96B36 256 aa8.96□□□□□ -0.98
SPG11-221ENST00000560299 HIRIP3Q9BW71 556 aaPredicted RBP8.96□□□□□ -0.98
SPG11-221ENST00000560299 KNDC1Q76NI1 1749 aa8.96□□□□□ -0.98
SPG11-221ENST00000560299 XIRP1Q702N8 1843 aaKnown RBP8.96□□□□□ -0.98
SPG11-221ENST00000560299 ADGRB1O14514 1584 aa8.95□□□□□ -0.98
SPG11-221ENST00000560299 CADPS2Q86UW7 1296 aa8.95□□□□□ -0.98
SPG11-221ENST00000560299 PROSER2Q86WR7 435 aaPredicted RBP8.95□□□□□ -0.98
SPG11-221ENST00000560299 MSH6P52701 1360 aa8.95□□□□□ -0.98
SPG11-221ENST00000560299 ADGRL3Q9HAR2 1447 aa8.95□□□□□ -0.98
SPG11-221ENST00000560299 TMF1P82094 1093 aa8.94□□□□□ -0.98
SPG11-221ENST00000560299 CDCA8Q53HL2 280 aa8.94□□□□□ -0.98
SPG11-221ENST00000560299 TMEM132EQ6IEE7 984 aa8.94□□□□□ -0.98
SPG11-221ENST00000560299 YTHDC2Q9H6S0 1430 aaKnown RBP8.94□□□□□ -0.98
SPG11-221ENST00000560299 HAX1O00165 279 aa8.93□□□□□ -0.98
SPG11-221ENST00000560299 DIEXFQ68CQ4 756 aaKnown RBP8.93□□□□□ -0.98
SPG11-221ENST00000560299 PIP4P2Q8N4L2 257 aa8.93□□□□□ -0.98
SPG11-221ENST00000560299 TRAK1Q9UPV9 953 aa8.93□□□□□ -0.98
SPG11-221ENST00000560299 ASXL1Q8IXJ9 1541 aa8.93□□□□□ -0.98
SPG11-221ENST00000560299 CENPJQ9HC77 1338 aaPredicted RBP8.92□□□□□ -0.98
SPG11-221ENST00000560299 CDC42BPGQ6DT37 1551 aa8.91□□□□□ -0.98
SPG11-221ENST00000560299 ROBO2Q9HCK4 1378 aa8.91□□□□□ -0.98
SPG11-221ENST00000560299 ILDR1Q86SU0 546 aaPredicted RBP8.91□□□□□ -0.98
SPG11-221ENST00000560299 POGKQ9P215 609 aa8.91□□□□□ -0.98
SPG11-221ENST00000560299 STK26Q9P289 416 aa8.91□□□□□ -0.98
SPG11-221ENST00000560299 UBAP1LF5GYI3 381 aa8.9□□□□□ -0.98
SPG11-221ENST00000560299 SLAIN2Q9P270 581 aa8.9□□□□□ -0.98
SPG11-221ENST00000560299 ADGRB2O60241 1585 aa8.9□□□□□ -0.99
SPG11-221ENST00000560299 CCDC7Q96M83 1385 aa8.89□□□□□ -0.99
SPG11-221ENST00000560299 SBNO2Q9Y2G9 1366 aa8.89□□□□□ -0.99
SPG11-221ENST00000560299 SIPA1L2Q9P2F8 1722 aaPredicted RBP8.89□□□□□ -0.99
SPG11-221ENST00000560299 WASHC2AQ641Q2 1341 aa8.89□□□□□ -0.99
SPG11-221ENST00000560299 ATF3P18847 181 aa8.89□□□□□ -0.99
SPG11-221ENST00000560299 DDX10Q13206 875 aaKnown RBP8.89□□□□□ -0.99
SPG11-221ENST00000560299 TESK2Q96S53 571 aa8.89□□□□□ -0.99
SPG11-221ENST00000560299 POLR3GLQ9BT43 218 aa8.89□□□□□ -0.99
SPG11-221ENST00000560299 KIF7Q2M1P5 1343 aa8.88□□□□□ -0.99
SPG11-221ENST00000560299 EVC2Q86UK5 1308 aa8.88□□□□□ -0.99
SPG11-221ENST00000560299 REM2Q8IYK8 340 aaPredicted RBP8.88□□□□□ -0.99
SPG11-221ENST00000560299 MST1RQ04912 1400 aa8.88□□□□□ -0.99
SPG11-221ENST00000560299 ANKARQ7Z5J8 1434 aa8.88□□□□□ -0.99
SPG11-221ENST00000560299 MYCNP04198 464 aaPredicted RBP8.87□□□□□ -0.99
SPG11-221ENST00000560299 PUS7Q96PZ0 661 aaKnown RBP8.87□□□□□ -0.99
SPG11-221ENST00000560299 PRAM1Q96QH2 718 aa8.87□□□□□ -0.99
SPG11-221ENST00000560299 AHDC1Q5TGY3 1603 aaPredicted RBP8.87□□□□□ -0.99
SPG11-221ENST00000560299 NALCNQ8IZF0 1738 aa8.86□□□□□ -0.99
SPG11-221ENST00000560299 ARHGEF28Q8N1W1 1705 aaKnown RBP8.86□□□□□ -0.99
SPG11-221ENST00000560299 C11orf95C9JLR9 678 aaPredicted RBP8.86□□□□□ -0.99
SPG11-221ENST00000560299 QRICH2Q9H0J4 1663 aa8.85□□□□□ -0.99
SPG11-221ENST00000560299 C1orf167Q5SNV9 1468 aa8.85□□□□□ -0.99
SPG11-221ENST00000560299 SAFB2Q14151 953 aaKnown RBP eCLIP8.85□□□□□ -0.99
SPG11-221ENST00000560299 DISP3Q9P2K9 1392 aa8.84□□□□□ -0.99
SPG11-221ENST00000560299 MINK1Q8N4C8 1332 aaPredicted RBP8.83□□□□□ -1
SPG11-221ENST00000560299 ANP32CO43423 234 aa8.83□□□□□ -1
SPG11-221ENST00000560299 SRPK2P78362 688 aaKnown RBP8.83□□□□□ -1
SPG11-221ENST00000560299 BRINP3Q76B58 766 aa8.83□□□□□ -1
SPG11-221ENST00000560299 WAPLQ7Z5K2 1190 aa8.83□□□□□ -1
SPG11-221ENST00000560299 C14orf37Q86TY3 774 aa8.83□□□□□ -1
SPG11-221ENST00000560299 ZBTB12Q9Y330 459 aaPredicted RBP8.83□□□□□ -1
SPG11-221ENST00000560299 ROBO1Q9Y6N7 1651 aa8.83□□□□□ -1
SPG11-221ENST00000560299 BRD4O60885 1362 aaPredicted RBP8.83□□□□□ -1
SPG11-221ENST00000560299 SOS2Q07890 1332 aaPredicted RBP8.82□□□□□ -1
SPG11-221ENST00000560299 NHSL1Q5SYE7 1610 aa8.82□□□□□ -1
SPG11-221ENST00000560299 ATAD2Q6PL18 1390 aa8.82□□□□□ -1
SPG11-221ENST00000560299 FMN2Q9NZ56 1722 aa8.82□□□□□ -1
SPG11-221ENST00000560299 KIF1AQ12756 1690 aa8.81□□□□□ -1
SPG11-221ENST00000560299 WASLO00401 505 aaPredicted RBP8.81□□□□□ -1
SPG11-221ENST00000560299 CDK19Q9BWU1 502 aa8.81□□□□□ -1
SPG11-221ENST00000560299 PLEKHH1Q9ULM0 1364 aa8.81□□□□□ -1
SPG11-221ENST00000560299 NINLQ9Y2I6 1382 aa8.81□□□□□ -1
SPG11-221ENST00000560299 SPATA31A6Q5VVP1 1343 aa8.8□□□□□ -1
SPG11-221ENST00000560299 NPHP3Q7Z494 1330 aa8.8□□□□□ -1
SPG11-221ENST00000560299 TULP4Q9NRJ4 1543 aa8.8□□□□□ -1
SPG11-221ENST00000560299 TMC1Q8TDI8 760 aa8.8□□□□□ -1
SPG11-221ENST00000560299 LRRC59Q96AG4 307 aaKnown RBP8.8□□□□□ -1
SPG11-221ENST00000560299 JCADQ9P266 1359 aa8.8□□□□□ -1
SPG11-221ENST00000560299 COL16A1Q07092 1604 aaPredicted RBP8.8□□□□□ -1
SPG11-221ENST00000560299 HSPA1LP34931 641 aa8.79□□□□□ -1
SPG11-221ENST00000560299 FXR2P51116 673 aaKnown RBP eCLIP8.79□□□□□ -1
SPG11-221ENST00000560299 PANK3Q9H999 370 aa8.79□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms