RNA–Protein interactions for RNA: ENST00000559257.5

USP3-211, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 2,217 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-211ENST00000559257 FAM210AQ96ND0 272 aa10.39□□□□□ -0.75
USP3-211ENST00000559257 KIF27Q86VH2 1401 aa10.39□□□□□ -0.75
USP3-211ENST00000559257 KIAA1107Q9UPP5 1409 aa10.39□□□□□ -0.75
USP3-211ENST00000559257 SWT1Q5T5J6 900 aaKnown RBP10.38□□□□□ -0.75
USP3-211ENST00000559257 ZNF526Q8TF50 670 aaPredicted RBP10.38□□□□□ -0.75
USP3-211ENST00000559257 BCL2L12Q9HB09 334 aa10.38□□□□□ -0.75
USP3-211ENST00000559257 KNSTRNQ9Y448 316 aa10.38□□□□□ -0.75
USP3-211ENST00000559257 MAP3K1Q13233 1512 aa10.38□□□□□ -0.75
USP3-211ENST00000559257 PNISRQ8TF01 805 aaKnown RBP10.38□□□□□ -0.75
USP3-211ENST00000559257 MRVI1Q9Y6F6 885 aa10.38□□□□□ -0.75
USP3-211ENST00000559257 MORC2Q9Y6X9 1032 aaPredicted RBP10.38□□□□□ -0.75
USP3-211ENST00000559257 KLHL33A6NCF5 533 aa10.37□□□□□ -0.75
USP3-211ENST00000559257 U2AF2P26368 475 aaKnown RBP eCLIP10.37□□□□□ -0.752e-7■■■□□ 16.9
USP3-211ENST00000559257 RAD51AP2Q09MP3 1159 aa10.37□□□□□ -0.75
USP3-211ENST00000559257 TRDNQ13061 729 aa10.37□□□□□ -0.75
USP3-211ENST00000559257 SYCP1Q15431 976 aa10.37□□□□□ -0.75
USP3-211ENST00000559257 ARAP1Q96P48 1450 aa10.37□□□□□ -0.75
USP3-211ENST00000559257 C11orf91Q3C1V1 193 aa10.37□□□□□ -0.75
USP3-211ENST00000559257 BORCS6Q96GS4 357 aa10.37□□□□□ -0.75
USP3-211ENST00000559257 NLRP1Q9C000 1473 aa10.36□□□□□ -0.75
USP3-211ENST00000559257 RAB3GAP2Q9H2M9 1393 aa10.36□□□□□ -0.75
USP3-211ENST00000559257 CASQ1P31415 396 aa10.36□□□□□ -0.75
USP3-211ENST00000559257 GSCP56915 257 aaPredicted RBP10.36□□□□□ -0.75
USP3-211ENST00000559257 KIAA2012Q0VF49 1180 aa10.36□□□□□ -0.75
USP3-211ENST00000559257 MTA1Q13330 715 aa10.36□□□□□ -0.75
USP3-211ENST00000559257 HIRIP3Q9BW71 556 aaPredicted RBP10.36□□□□□ -0.75
USP3-211ENST00000559257 NBPF3Q9H094 633 aa10.36□□□□□ -0.75
USP3-211ENST00000559257 DDX41Q9UJV9 622 aaKnown RBP10.36□□□□□ -0.75
USP3-211ENST00000559257 GOLGA6L6A8MZA4 724 aa10.35□□□□□ -0.75
USP3-211ENST00000559257 RGL3Q3MIN7 710 aa10.35□□□□□ -0.75
USP3-211ENST00000559257 LRCH2Q5VUJ6 765 aa10.35□□□□□ -0.75
USP3-211ENST00000559257 CCDC91Q7Z6B0 441 aa10.35□□□□□ -0.75
USP3-211ENST00000559257 PABPN1Q86U42 306 aaKnown RBP eCLIP10.35□□□□□ -0.75
USP3-211ENST00000559257 JMYQ8N9B5 988 aa10.35□□□□□ -0.75
USP3-211ENST00000559257 CXorf56Q9H5V9 222 aa10.35□□□□□ -0.75
USP3-211ENST00000559257 SUFUQ9UMX1 484 aa10.35□□□□□ -0.75
USP3-211ENST00000559257 CCDC96Q2M329 555 aa10.35□□□□□ -0.75
USP3-211ENST00000559257 MUM1L1Q5H9M0 696 aa10.35□□□□□ -0.75
USP3-211ENST00000559257 CWC22Q9HCG8 908 aaKnown RBP10.35□□□□□ -0.75
USP3-211ENST00000559257 RCAN3Q9UKA8 241 aa10.35□□□□□ -0.75
USP3-211ENST00000559257 PLCB2Q00722 1185 aa10.34□□□□□ -0.75
USP3-211ENST00000559257 ANKRD23Q86SG2 305 aa10.34□□□□□ -0.75
USP3-211ENST00000559257 RPAINQ86UA6 219 aa10.34□□□□□ -0.75
USP3-211ENST00000559257 ABCA5Q8WWZ7 1642 aa10.34□□□□□ -0.75
USP3-211ENST00000559257 REC8O95072 547 aa10.34□□□□□ -0.75
USP3-211ENST00000559257 NPC1L1Q9UHC9 1359 aa10.33□□□□□ -0.75
USP3-211ENST00000559257 CTIFO43310 598 aaKnown RBP10.33□□□□□ -0.76
USP3-211ENST00000559257 LIG1P18858 919 aa10.33□□□□□ -0.76
USP3-211ENST00000559257 CALR3Q96L12 384 aaKnown RBP10.33□□□□□ -0.76
USP3-211ENST00000559257 CTNNA3Q9UI47 895 aa10.33□□□□□ -0.76
USP3-211ENST00000559257 ZBTB12Q9Y330 459 aaPredicted RBP10.33□□□□□ -0.76
USP3-211ENST00000559257 SETDB1Q15047 1291 aa10.33□□□□□ -0.76
USP3-211ENST00000559257 TSHZ1Q6ZSZ6 1077 aa10.33□□□□□ -0.76
USP3-211ENST00000559257 ZNF513Q8N8E2 541 aaPredicted RBP10.33□□□□□ -0.76
USP3-211ENST00000559257 TBC1D2Q9BYX2 928 aa10.33□□□□□ -0.76
USP3-211ENST00000559257 ZNF445P59923 1031 aa10.32□□□□□ -0.76
USP3-211ENST00000559257 KRT222Q8N1A0 295 aa10.32□□□□□ -0.76
USP3-211ENST00000559257 GOLGA6L1Q8N7Z2 621 aa10.32□□□□□ -0.76
USP3-211ENST00000559257 MKL1Q969V6 931 aa10.32□□□□□ -0.76
USP3-211ENST00000559257 ZNF692Q9BU19 519 aaPredicted RBP10.32□□□□□ -0.76
USP3-211ENST00000559257 CFTRP13569 1480 aa10.32□□□□□ -0.76
USP3-211ENST00000559257 ARHGAP31Q2M1Z3 1444 aa10.32□□□□□ -0.76
USP3-211ENST00000559257 NRDCO43847 1150 aa10.31□□□□□ -0.76
USP3-211ENST00000559257 CYP2C19P33261 490 aa10.31□□□□□ -0.76
USP3-211ENST00000559257 HNRNPH2P55795 449 aaKnown RBP10.31□□□□□ -0.76
USP3-211ENST00000559257 ZC3H12AQ5D1E8 599 aaKnown RBP10.31□□□□□ -0.76
USP3-211ENST00000559257 GBP4Q96PP9 640 aa10.31□□□□□ -0.76
USP3-211ENST00000559257 PAIP2Q9BPZ3 127 aaKnown RBP10.31□□□□□ -0.76
USP3-211ENST00000559257 DIAPH3Q9NSV4 1193 aa10.31□□□□□ -0.76
USP3-211ENST00000559257 CUX1P39880 1505 aa10.31□□□□□ -0.76
USP3-211ENST00000559257 MPHOSPH10O00566 681 aaKnown RBP10.31□□□□□ -0.76
USP3-211ENST00000559257 JRKLQ9Y4A0 524 aa10.31□□□□□ -0.76
USP3-211ENST00000559257 CTAGE5O15320 804 aa10.3□□□□□ -0.76
USP3-211ENST00000559257 ATP2B1P20020 1258 aa10.3□□□□□ -0.76
USP3-211ENST00000559257 CHAF1AQ13111 956 aaPredicted RBP10.3□□□□□ -0.76
USP3-211ENST00000559257 PDE3BQ13370 1112 aa10.3□□□□□ -0.76
USP3-211ENST00000559257 CIZ1Q9ULV3 898 aaPredicted RBP10.3□□□□□ -0.76
USP3-211ENST00000559257 PAXBP1Q9Y5B6 917 aa10.3□□□□□ -0.76
USP3-211ENST00000559257 ZMYM3Q14202 1370 aa10.3□□□□□ -0.76
USP3-211ENST00000559257 GOLGA6L22H0YM25 854 aa10.3□□□□□ -0.76
USP3-211ENST00000559257 DNAJC21Q5F1R6 531 aaKnown RBP10.3□□□□□ -0.76
USP3-211ENST00000559257 TMTC2Q8N394 836 aa10.3□□□□□ -0.76
USP3-211ENST00000559257 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.3□□□□□ -0.762e-22■■■■■ 279.5
USP3-211ENST00000559257 FAM53CQ9NYF3 392 aa10.3□□□□□ -0.76
USP3-211ENST00000559257 SETD5Q9C0A6 1442 aa10.3□□□□□ -0.76
USP3-211ENST00000559257 CCDC196A0A1B0GTZ2 297 aa10.29□□□□□ -0.76
USP3-211ENST00000559257 TBC1D22AQ8WUA7 517 aa10.29□□□□□ -0.76
USP3-211ENST00000559257 PIBF1Q8WXW3 757 aa10.29□□□□□ -0.76
USP3-211ENST00000559257 TSC1Q92574 1164 aa10.29□□□□□ -0.76
USP3-211ENST00000559257 NOL10Q9BSC4 688 aaKnown RBP10.29□□□□□ -0.76
USP3-211ENST00000559257 CCNB3Q8WWL7 1395 aa10.29□□□□□ -0.76
USP3-211ENST00000559257 DEF6Q9H4E7 631 aa10.29□□□□□ -0.76
USP3-211ENST00000559257 NCOA3Q9Y6Q9 1424 aa10.29□□□□□ -0.76
USP3-211ENST00000559257 HSPA5P11021 654 aaKnown RBP10.28□□□□□ -0.76
USP3-211ENST00000559257 ATP6V1AP38606 617 aa10.28□□□□□ -0.76
USP3-211ENST00000559257 FKBP5Q13451 457 aaPredicted RBP10.28□□□□□ -0.76
USP3-211ENST00000559257 SPTLC3Q9NUV7 552 aa10.28□□□□□ -0.76
USP3-211ENST00000559257 A0A1B0GUL7 405 aa10.27□□□□□ -0.76
USP3-211ENST00000559257 COQ9O75208 318 aa10.27□□□□□ -0.76
USP3-211ENST00000559257 BIRC2Q13490 618 aa10.27□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms