RNA–Protein interactions for RNA: ENST00000558861.1

LRRC28-209, Transcript of leucine rich repeat containing 28, humanhuman

TSL 3

Gene LRRC28, Length 744 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-209ENST00000558861 HPS5Q9UPZ3 1129 aa10.74□□□□□ -0.69
LRRC28-209ENST00000558861 LILRB3O75022 631 aa10.73□□□□□ -0.69
LRRC28-209ENST00000558861 FLIIQ13045 1269 aa10.73□□□□□ -0.69
LRRC28-209ENST00000558861 MCM6Q14566 821 aa10.73□□□□□ -0.69
LRRC28-209ENST00000558861 KMT5BQ4FZB7 885 aa10.73□□□□□ -0.69
LRRC28-209ENST00000558861 TOP2AP11388 1531 aaKnown RBP10.73□□□□□ -0.69
LRRC28-209ENST00000558861 ATP6V1AP38606 617 aa10.71□□□□□ -0.69
LRRC28-209ENST00000558861 RTL5Q5HYW3 569 aaPredicted RBP10.71□□□□□ -0.69
LRRC28-209ENST00000558861 CDAN1Q8IWY9 1227 aa10.71□□□□□ -0.69
LRRC28-209ENST00000558861 NECTIN2Q92692 538 aa10.71□□□□□ -0.69
LRRC28-209ENST00000558861 NUTM2BA6NNL0 878 aaPredicted RBP10.7□□□□□ -0.7
LRRC28-209ENST00000558861 NUTM2EB1AL46 878 aaPredicted RBP10.7□□□□□ -0.7
LRRC28-209ENST00000558861 ACTN4O43707 911 aaKnown RBP10.7□□□□□ -0.7
LRRC28-209ENST00000558861 HRCP23327 699 aa10.7□□□□□ -0.7
LRRC28-209ENST00000558861 APLP1P51693 650 aa10.7□□□□□ -0.7
LRRC28-209ENST00000558861 PPP4CP60510 307 aa10.7□□□□□ -0.7
LRRC28-209ENST00000558861 PUS10Q3MIT2 529 aaKnown RBP10.7□□□□□ -0.7
LRRC28-209ENST00000558861 NUTM2DQ5VT03 806 aaPredicted RBP10.7□□□□□ -0.7
LRRC28-209ENST00000558861 NUTM2AQ8IVF1 878 aaPredicted RBP10.7□□□□□ -0.7
LRRC28-209ENST00000558861 ZBTB3Q9H5J0 574 aa10.7□□□□□ -0.7
LRRC28-209ENST00000558861 GRIPAP1Q4V328 841 aa10.69□□□□□ -0.7
LRRC28-209ENST00000558861 PRPF38BQ5VTL8 546 aaKnown RBP10.69□□□□□ -0.7
LRRC28-209ENST00000558861 TSR3Q9UJK0 312 aaKnown RBP10.69□□□□□ -0.7
LRRC28-209ENST00000558861 MORN1Q5T089 497 aa10.68□□□□□ -0.7
LRRC28-209ENST00000558861 WBP1LQ9NX94 342 aa10.68□□□□□ -0.7
LRRC28-209ENST00000558861 THSD4Q6ZMP0 1018 aa10.67□□□□□ -0.7
LRRC28-209ENST00000558861 KCTD12Q96CX2 325 aaKnown RBP10.67□□□□□ -0.7
LRRC28-209ENST00000558861 MTMR2Q13614 643 aa10.66□□□□□ -0.7
LRRC28-209ENST00000558861 TMEM259Q4ZIN3 620 aa10.66□□□□□ -0.7
LRRC28-209ENST00000558861 SYMPKQ92797 1274 aaKnown RBP10.66□□□□□ -0.7
LRRC28-209ENST00000558861 PRR14Q9BWN1 585 aa10.66□□□□□ -0.7
LRRC28-209ENST00000558861 ZMYND15Q9H091 742 aa10.66□□□□□ -0.7
LRRC28-209ENST00000558861 SNRKQ9NRH2 765 aa10.66□□□□□ -0.7
LRRC28-209ENST00000558861 SLC27A5Q9Y2P5 690 aa10.66□□□□□ -0.7
LRRC28-209ENST00000558861 C6orf229H3BNL8 230 aa10.65□□□□□ -0.7
LRRC28-209ENST00000558861 AP1G2O75843 785 aa10.65□□□□□ -0.7
LRRC28-209ENST00000558861 SPDYE5A6NIY4 337 aa10.64□□□□□ -0.71
LRRC28-209ENST00000558861 BANK1Q8NDB2 785 aa10.64□□□□□ -0.71
LRRC28-209ENST00000558861 CLUAP1Q96AJ1 413 aa10.64□□□□□ -0.71
LRRC28-209ENST00000558861 UBTFP17480 764 aaKnown RBP10.63□□□□□ -0.71
LRRC28-209ENST00000558861 PCDHB3Q9Y5E6 796 aa10.63□□□□□ -0.71
LRRC28-209ENST00000558861 CFAP99D6REC4 459 aa10.62□□□□□ -0.71
LRRC28-209ENST00000558861 SUPT5HO00267 1087 aaKnown RBP10.62□□□□□ -0.71
LRRC28-209ENST00000558861 USP17L8P0C7I0 530 aa10.62□□□□□ -0.71
LRRC28-209ENST00000558861 MTMR14Q8NCE2 650 aa10.62□□□□□ -0.71
LRRC28-209ENST00000558861 CCDC88BA6NC98 1476 aa10.61□□□□□ -0.71
LRRC28-209ENST00000558861 BLOC1S3Q6QNY0 202 aa10.61□□□□□ -0.71
LRRC28-209ENST00000558861 RNF19BQ6ZMZ0 732 aa10.61□□□□□ -0.71
LRRC28-209ENST00000558861 TSC1Q92574 1164 aa10.61□□□□□ -0.71
LRRC28-209ENST00000558861 POM121Q96HA1 1249 aa10.6□□□□□ -0.71
LRRC28-209ENST00000558861 Q3C1V9 767 aa10.59□□□□□ -0.71
LRRC28-209ENST00000558861 PRR7Q8TB68 274 aa10.59□□□□□ -0.71
LRRC28-209ENST00000558861 NESP48681 1621 aa10.58□□□□□ -0.72
LRRC28-209ENST00000558861 CADPSQ9ULU8 1353 aa10.58□□□□□ -0.72
LRRC28-209ENST00000558861 CTDSPL2Q05D32 466 aa10.58□□□□□ -0.72
LRRC28-209ENST00000558861 RETREG3Q86VR2 466 aa10.57□□□□□ -0.72
LRRC28-209ENST00000558861 SCUBE3Q8IX30 993 aa10.57□□□□□ -0.72
LRRC28-209ENST00000558861 HELBQ8NG08 1087 aaPredicted RBP10.57□□□□□ -0.72
LRRC28-209ENST00000558861 CFTRP13569 1480 aa10.56□□□□□ -0.72
LRRC28-209ENST00000558861 NR1I2O75469 434 aa10.56□□□□□ -0.72
LRRC28-209ENST00000558861 PTPN5P54829 565 aa10.56□□□□□ -0.72
LRRC28-209ENST00000558861 COPS2P61201 443 aa10.56□□□□□ -0.72
LRRC28-209ENST00000558861 COG6Q9Y2V7 657 aa10.56□□□□□ -0.72
LRRC28-209ENST00000558861 BRICD5Q6PL45 260 aa10.55□□□□□ -0.72
LRRC28-209ENST00000558861 LRRN4Q8WUT4 740 aa10.55□□□□□ -0.72
LRRC28-209ENST00000558861 THAP11Q96EK4 314 aa10.55□□□□□ -0.72
LRRC28-209ENST00000558861 HMX1Q9NP08 348 aaPredicted RBP10.55□□□□□ -0.72
LRRC28-209ENST00000558861 A6NJR5 290 aa10.54□□□□□ -0.72
LRRC28-209ENST00000558861 MYT1LQ9UL68 1186 aa10.54□□□□□ -0.72
LRRC28-209ENST00000558861 LAMC3Q9Y6N6 1575 aa10.54□□□□□ -0.72
LRRC28-209ENST00000558861 PER1O15534 1290 aaPredicted RBP10.53□□□□□ -0.72
LRRC28-209ENST00000558861 USB1Q9BQ65 265 aaKnown RBP10.53□□□□□ -0.72
LRRC28-209ENST00000558861 PCDH10Q9P2E7 1040 aa10.53□□□□□ -0.72
LRRC28-209ENST00000558861 SALL2Q9Y467 1007 aaPredicted RBP10.53□□□□□ -0.72
LRRC28-209ENST00000558861 SOCS7O14512 581 aa10.52□□□□□ -0.73
LRRC28-209ENST00000558861 RAD21O60216 631 aa10.52□□□□□ -0.73
LRRC28-209ENST00000558861 FMNL1O95466 1100 aaPredicted RBP10.52□□□□□ -0.73
LRRC28-209ENST00000558861 PROSER2Q86WR7 435 aaPredicted RBP10.52□□□□□ -0.73
LRRC28-209ENST00000558861 GJD4Q96KN9 370 aaPredicted RBP10.52□□□□□ -0.73
LRRC28-209ENST00000558861 GDPD2Q9HCC8 539 aa10.52□□□□□ -0.73
LRRC28-209ENST00000558861 TLL1O43897 1013 aa10.51□□□□□ -0.73
LRRC28-209ENST00000558861 NYAP1Q6ZVC0 841 aa10.51□□□□□ -0.73
LRRC28-209ENST00000558861 TBC1D2BQ9UPU7 963 aa10.51□□□□□ -0.73
LRRC28-209ENST00000558861 MTRQ99707 1265 aa10.5□□□□□ -0.73
LRRC28-209ENST00000558861 TRIM34Q9BYJ4 488 aa10.5□□□□□ -0.73
LRRC28-209ENST00000558861 TRAK2O60296 914 aa10.49□□□□□ -0.73
LRRC28-209ENST00000558861 DESI1Q6ICB0 168 aa10.49□□□□□ -0.73
LRRC28-209ENST00000558861 ARID3CA6NKF2 412 aa10.48□□□□□ -0.73
LRRC28-209ENST00000558861 APBB1O00213 710 aa10.48□□□□□ -0.73
LRRC28-209ENST00000558861 FNBP4Q8N3X1 1017 aaPredicted RBP10.48□□□□□ -0.73
LRRC28-209ENST00000558861 EPS8L1Q8TE68 723 aa10.48□□□□□ -0.73
LRRC28-209ENST00000558861 SPSB2Q99619 263 aa10.48□□□□□ -0.73
LRRC28-209ENST00000558861 ABL2P42684 1182 aa10.47□□□□□ -0.73
LRRC28-209ENST00000558861 FAM160A2Q8N612 972 aaPredicted RBP10.47□□□□□ -0.73
LRRC28-209ENST00000558861 C1orf115Q9H7X2 142 aa10.47□□□□□ -0.73
LRRC28-209ENST00000558861 PRDM9Q9NQV7 894 aa10.47□□□□□ -0.73
LRRC28-209ENST00000558861 GPR37L1O60883 481 aa10.46□□□□□ -0.73
LRRC28-209ENST00000558861 ZPR1O75312 459 aa10.46□□□□□ -0.73
LRRC28-209ENST00000558861 TJAP1Q5JTD0 557 aa10.46□□□□□ -0.73
LRRC28-209ENST00000558861 ZNF516Q92618 1163 aa10.46□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms