RNA–Protein interactions for RNA: ENST00000558248.5

LRRC28-205, Transcript of leucine rich repeat containing 28, humanhuman

TSL 3

Gene LRRC28, Length 499 nt, Biotype retained intron, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-205ENST00000558248 KDM4CQ9H3R0 1056 aa7.78□□□□□ -1.16
LRRC28-205ENST00000558248 V9GY48 417 aaPredicted RBP7.78□□□□□ -1.16
LRRC28-205ENST00000558248 RETREG3Q86VR2 466 aa7.77□□□□□ -1.17
LRRC28-205ENST00000558248 FAM160A2Q8N612 972 aaPredicted RBP7.77□□□□□ -1.17
LRRC28-205ENST00000558248 DDRGK1Q96HY6 314 aa7.77□□□□□ -1.17
LRRC28-205ENST00000558248 SPDYE5A6NIY4 337 aa7.76□□□□□ -1.17
LRRC28-205ENST00000558248 NDUFV2P19404 249 aa7.76□□□□□ -1.17
LRRC28-205ENST00000558248 GPBP1L1Q9HC44 474 aaPredicted RBP7.76□□□□□ -1.17
LRRC28-205ENST00000558248 PPEF1O14829 653 aaPredicted RBP7.75□□□□□ -1.17
LRRC28-205ENST00000558248 PRKCSHP14314 528 aaPredicted RBP7.75□□□□□ -1.17
LRRC28-205ENST00000558248 SLC19A1P41440 591 aa7.75□□□□□ -1.17
LRRC28-205ENST00000558248 MTMR2Q13614 643 aa7.75□□□□□ -1.17
LRRC28-205ENST00000558248 NEUROD2Q15784 382 aa7.75□□□□□ -1.17
LRRC28-205ENST00000558248 RSBN1LQ6PCB5 846 aaPredicted RBP7.75□□□□□ -1.17
LRRC28-205ENST00000558248 PRDM9Q9NQV7 894 aa7.75□□□□□ -1.17
LRRC28-205ENST00000558248 FCF1Q9Y324 198 aaKnown RBP7.75□□□□□ -1.17
LRRC28-205ENST00000558248 RIC3Q7Z5B4 369 aa7.74□□□□□ -1.17
LRRC28-205ENST00000558248 PCDHGC3Q9UN70 934 aa7.74□□□□□ -1.17
LRRC28-205ENST00000558248 SPTLC1O15269 473 aa7.73□□□□□ -1.17
LRRC28-205ENST00000558248 ZBTB24O43167 697 aaPredicted RBP7.73□□□□□ -1.17
LRRC28-205ENST00000558248 MMP16P51512 607 aa7.73□□□□□ -1.17
LRRC28-205ENST00000558248 MYSM1Q5VVJ2 828 aa7.73□□□□□ -1.17
LRRC28-205ENST00000558248 SYMPKQ92797 1274 aaKnown RBP7.73□□□□□ -1.17
LRRC28-205ENST00000558248 IRX2Q9BZI1 471 aaPredicted RBP7.73□□□□□ -1.17
LRRC28-205ENST00000558248 ZBTB3Q9H5J0 574 aa7.73□□□□□ -1.17
LRRC28-205ENST00000558248 DXOO77932 396 aaKnown RBP7.72□□□□□ -1.17
LRRC28-205ENST00000558248 JUNDP17535 347 aa7.72□□□□□ -1.17
LRRC28-205ENST00000558248 ATP1B4Q9UN42 357 aaPredicted RBP7.72□□□□□ -1.17
LRRC28-205ENST00000558248 CLK2P49760 499 aaKnown RBP7.71□□□□□ -1.18
LRRC28-205ENST00000558248 CSPP1Q1MSJ5 1256 aa7.71□□□□□ -1.18
LRRC28-205ENST00000558248 PRPF38BQ5VTL8 546 aaKnown RBP7.71□□□□□ -1.18
LRRC28-205ENST00000558248 NUTM2BA6NNL0 878 aaPredicted RBP7.7□□□□□ -1.18
LRRC28-205ENST00000558248 NUTM2EB1AL46 878 aaPredicted RBP7.7□□□□□ -1.18
LRRC28-205ENST00000558248 RPIAP49247 311 aa7.7□□□□□ -1.18
LRRC28-205ENST00000558248 NUTM2DQ5VT03 806 aaPredicted RBP7.7□□□□□ -1.18
LRRC28-205ENST00000558248 NUTM2AQ8IVF1 878 aaPredicted RBP7.7□□□□□ -1.18
LRRC28-205ENST00000558248 CCDC24Q8N4L8 307 aa7.7□□□□□ -1.18
LRRC28-205ENST00000558248 PRR7Q8TB68 274 aa7.7□□□□□ -1.18
LRRC28-205ENST00000558248 FAM117AQ9C073 453 aa7.7□□□□□ -1.18
LRRC28-205ENST00000558248 CD2BP2O95400 341 aaKnown RBP7.69□□□□□ -1.18
LRRC28-205ENST00000558248 LAPTM4AQ15012 233 aa7.69□□□□□ -1.18
LRRC28-205ENST00000558248 TUSC1Q2TAM9 212 aa7.69□□□□□ -1.18
LRRC28-205ENST00000558248 SPRYD7Q5W111 196 aa7.69□□□□□ -1.18
LRRC28-205ENST00000558248 ARXQ96QS3 562 aa7.69□□□□□ -1.18
LRRC28-205ENST00000558248 HRCP23327 699 aa7.68□□□□□ -1.18
LRRC28-205ENST00000558248 SH3D19Q5HYK7 790 aa7.68□□□□□ -1.18
LRRC28-205ENST00000558248 DESI1Q6ICB0 168 aa7.68□□□□□ -1.18
LRRC28-205ENST00000558248 LIAT1Q6ZQX7 453 aa7.68□□□□□ -1.18
LRRC28-205ENST00000558248 ZNF598Q86UK7 904 aaKnown RBP7.68□□□□□ -1.18
LRRC28-205ENST00000558248 NUDT12Q9BQG2 462 aa7.68□□□□□ -1.18
LRRC28-205ENST00000558248 POLR3EQ9NVU0 708 aa7.68□□□□□ -1.18
LRRC28-205ENST00000558248 LIMD1Q9UGP4 676 aa7.68□□□□□ -1.18
LRRC28-205ENST00000558248 PCDHB15Q9Y5E8 787 aa7.68□□□□□ -1.18
LRRC28-205ENST00000558248 SKIV2LQ15477 1246 aaKnown RBP7.67□□□□□ -1.18
LRRC28-205ENST00000558248 PTPRNQ16849 979 aa7.67□□□□□ -1.18
LRRC28-205ENST00000558248 PLA2G2CQ5R387 149 aa7.67□□□□□ -1.18
LRRC28-205ENST00000558248 ZNF697Q5TEC3 545 aa7.67□□□□□ -1.18
LRRC28-205ENST00000558248 CCNYL3P0C7X3 344 aa7.66□□□□□ -1.18
LRRC28-205ENST00000558248 BRPF1P55201 1214 aaPredicted RBP7.66□□□□□ -1.18
LRRC28-205ENST00000558248 HELBQ8NG08 1087 aaPredicted RBP7.66□□□□□ -1.18
LRRC28-205ENST00000558248 CABLES1Q8TDN4 633 aa7.66□□□□□ -1.18
LRRC28-205ENST00000558248 TSC1Q92574 1164 aa7.66□□□□□ -1.18
LRRC28-205ENST00000558248 GFRA3O60609 400 aa7.65□□□□□ -1.18
LRRC28-205ENST00000558248 PDZRN3Q9UPQ7 1066 aa7.65□□□□□ -1.18
LRRC28-205ENST00000558248 PLEKHG3A1L390 1219 aa7.64□□□□□ -1.19
LRRC28-205ENST00000558248 LILRB3O75022 631 aa7.64□□□□□ -1.19
LRRC28-205ENST00000558248 TRIM32Q13049 653 aa7.64□□□□□ -1.19
LRRC28-205ENST00000558248 QPCTQ16769 361 aa7.64□□□□□ -1.19
LRRC28-205ENST00000558248 EMID1Q96A84 441 aaPredicted RBP7.64□□□□□ -1.19
LRRC28-205ENST00000558248 CFAP99D6REC4 459 aa7.63□□□□□ -1.19
LRRC28-205ENST00000558248 NRG2O14511 850 aaPredicted RBP7.63□□□□□ -1.19
LRRC28-205ENST00000558248 CTHP32929 405 aa7.62□□□□□ -1.19
LRRC28-205ENST00000558248 IL27Q8NEV9 243 aa7.62□□□□□ -1.19
LRRC28-205ENST00000558248 PCMTD1Q96MG8 357 aaPredicted RBP7.62□□□□□ -1.19
LRRC28-205ENST00000558248 GOPCQ9HD26 462 aa7.62□□□□□ -1.19
LRRC28-205ENST00000558248 PRR20EP86478 221 aa7.61□□□□□ -1.19
LRRC28-205ENST00000558248 PRR20CP86479 221 aa7.61□□□□□ -1.19
LRRC28-205ENST00000558248 PRR20DP86480 221 aa7.61□□□□□ -1.19
LRRC28-205ENST00000558248 PRR20BP86481 221 aa7.61□□□□□ -1.19
LRRC28-205ENST00000558248 PRR20AP86496 221 aa7.61□□□□□ -1.19
LRRC28-205ENST00000558248 FOXC1Q12948 553 aa7.61□□□□□ -1.19
LRRC28-205ENST00000558248 LYPD8Q6UX82 237 aa7.61□□□□□ -1.19
LRRC28-205ENST00000558248 WNT7BP56706 349 aa7.6□□□□□ -1.19
LRRC28-205ENST00000558248 KCNH2Q12809 1159 aa7.6□□□□□ -1.19
LRRC28-205ENST00000558248 Q6ZNB5 142 aa7.6□□□□□ -1.19
LRRC28-205ENST00000558248 EVA1BQ9NVM1 165 aa7.6□□□□□ -1.19
LRRC28-205ENST00000558248 TNFRSF10AO00220 468 aa7.59□□□□□ -1.19
LRRC28-205ENST00000558248 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.59□□□□□ -1.19
LRRC28-205ENST00000558248 UNC93B1Q9H1C4 597 aa7.59□□□□□ -1.19
LRRC28-205ENST00000558248 RTL5Q5HYW3 569 aaPredicted RBP7.58□□□□□ -1.2
LRRC28-205ENST00000558248 PROCA1Q8NCQ7 364 aaPredicted RBP7.58□□□□□ -1.2
LRRC28-205ENST00000558248 WNT7AO00755 349 aa7.57□□□□□ -1.2
LRRC28-205ENST00000558248 GDF9O60383 454 aa7.57□□□□□ -1.2
LRRC28-205ENST00000558248 PKDCCQ504Y2 493 aa7.57□□□□□ -1.2
LRRC28-205ENST00000558248 CYP4X1Q8N118 509 aa7.57□□□□□ -1.2
LRRC28-205ENST00000558248 PPP2R2DQ66LE6 453 aa7.56□□□□□ -1.2
LRRC28-205ENST00000558248 PTCRAQ6ISU1 281 aaPredicted RBP7.56□□□□□ -1.2
LRRC28-205ENST00000558248 TRIM67Q6ZTA4 783 aa7.56□□□□□ -1.2
LRRC28-205ENST00000558248 ERICH6Q7L0X2 663 aa7.56□□□□□ -1.2
LRRC28-205ENST00000558248 PKD2L1Q9P0L9 805 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms