RNA–Protein interactions for RNA: ENST00000557740.5

SHMT2-235, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-235ENST00000557740 ABCC11Q96J66 1382 aa21.61■■□□□ 1.05
SHMT2-235ENST00000557740 TMEM132EQ6IEE7 984 aa21.6■■□□□ 1.05
SHMT2-235ENST00000557740 LAMC1P11047 1609 aa21.59■■□□□ 1.05
SHMT2-235ENST00000557740 WAPLQ7Z5K2 1190 aa21.59■■□□□ 1.05
SHMT2-235ENST00000557740 MYOM2P54296 1465 aa21.58■■□□□ 1.05
SHMT2-235ENST00000557740 AFF2P51816 1311 aa21.58■■□□□ 1.05
SHMT2-235ENST00000557740 SOS2Q07890 1332 aaPredicted RBP21.58■■□□□ 1.05
SHMT2-235ENST00000557740 YTHDC2Q9H6S0 1430 aaKnown RBP21.58■■□□□ 1.05
SHMT2-235ENST00000557740 ESCO1Q5FWF5 840 aa21.58■■□□□ 1.05
SHMT2-235ENST00000557740 KNDC1Q76NI1 1749 aa21.57■■□□□ 1.04
SHMT2-235ENST00000557740 C8orf37Q96NL8 207 aa21.56■■□□□ 1.04
SHMT2-235ENST00000557740 PLEKHH1Q9ULM0 1364 aa21.56■■□□□ 1.04
SHMT2-235ENST00000557740 NRXN1Q9ULB1 1477 aa21.56■■□□□ 1.04
SHMT2-235ENST00000557740 NPHP3Q7Z494 1330 aa21.55■■□□□ 1.04
SHMT2-235ENST00000557740 C14orf93Q9H972 538 aaKnown RBP21.55■■□□□ 1.04
SHMT2-235ENST00000557740 RXRBP28702 533 aa21.54■■□□□ 1.04
SHMT2-235ENST00000557740 NUTM2FA1L443 756 aa21.53■■□□□ 1.04
SHMT2-235ENST00000557740 DHX57Q6P158 1386 aaKnown RBP21.52■■□□□ 1.04
SHMT2-235ENST00000557740 ADAMTS2O95450 1211 aa21.52■■□□□ 1.04
SHMT2-235ENST00000557740 CFAP70Q5T0N1 1121 aa21.52■■□□□ 1.04
SHMT2-235ENST00000557740 FOXO3O43524 673 aa21.49■■□□□ 1.03
SHMT2-235ENST00000557740 SIRT1Q96EB6 747 aa21.49■■□□□ 1.03
SHMT2-235ENST00000557740 NGLY1Q96IV0 654 aa21.49■■□□□ 1.03
SHMT2-235ENST00000557740 PXDNQ92626 1479 aa21.49■■□□□ 1.03
SHMT2-235ENST00000557740 CDK12Q9NYV4 1490 aaPredicted RBP21.49■■□□□ 1.03
SHMT2-235ENST00000557740 XPCQ01831 940 aaPredicted RBP21.48■■□□□ 1.03
SHMT2-235ENST00000557740 FMN2Q9NZ56 1722 aa21.46■■□□□ 1.03
SHMT2-235ENST00000557740 HRCP23327 699 aa21.46■■□□□ 1.03
SHMT2-235ENST00000557740 PRAM1Q96QH2 718 aa21.46■■□□□ 1.03
SHMT2-235ENST00000557740 QTRT2Q9H974 415 aaKnown RBP21.46■■□□□ 1.03
SHMT2-235ENST00000557740 COL22A1Q8NFW1 1626 aaPredicted RBP21.45■■□□□ 1.02
SHMT2-235ENST00000557740 SAFB2Q14151 953 aaKnown RBP eCLIP21.45■■□□□ 1.02
SHMT2-235ENST00000557740 RBM6P78332 1123 aaKnown RBP21.44■■□□□ 1.02
SHMT2-235ENST00000557740 POGKQ9P215 609 aa21.44■■□□□ 1.02
SHMT2-235ENST00000557740 KIF1AQ12756 1690 aa21.44■■□□□ 1.02
SHMT2-235ENST00000557740 DCAF11Q8TEB1 546 aa21.43■■□□□ 1.02
SHMT2-235ENST00000557740 KDM2AQ9Y2K7 1162 aa21.43■■□□□ 1.02
SHMT2-235ENST00000557740 DLC1Q96QB1 1528 aa21.43■■□□□ 1.02
SHMT2-235ENST00000557740 RGS12O14924 1447 aa21.41■■□□□ 1.02
SHMT2-235ENST00000557740 USP21Q9UK80 565 aa21.41■■□□□ 1.02
SHMT2-235ENST00000557740 ADGRB1O14514 1584 aa21.4■■□□□ 1.02
SHMT2-235ENST00000557740 STAC3Q96MF2 364 aa21.4■■□□□ 1.02
SHMT2-235ENST00000557740 UPF1Q92900 1129 aaKnown RBP eCLIP21.39■■□□□ 1.01
SHMT2-235ENST00000557740 PHF8Q9UPP1 1060 aa21.39■■□□□ 1.01
SHMT2-235ENST00000557740 TRPC5Q9UL62 973 aaPredicted RBP21.38■■□□□ 1.01
SHMT2-235ENST00000557740 SPATA31A3Q5VYP0 1347 aa21.37■■□□□ 1.01
SHMT2-235ENST00000557740 KRT28Q7Z3Y7 464 aa21.37■■□□□ 1.01
SHMT2-235ENST00000557740 FNBP4Q8N3X1 1017 aaPredicted RBP21.37■■□□□ 1.01
SHMT2-235ENST00000557740 TRAK1Q9UPV9 953 aa21.37■■□□□ 1.01
SHMT2-235ENST00000557740 ANKARQ7Z5J8 1434 aa21.37■■□□□ 1.01
SHMT2-235ENST00000557740 ADGRB2O60241 1585 aa21.36■■□□□ 1.01
SHMT2-235ENST00000557740 PSME1Q06323 249 aa21.35■■□□□ 1.01
SHMT2-235ENST00000557740 TNS3Q68CZ2 1445 aa21.35■■□□□ 1.01
SHMT2-235ENST00000557740 ATRNO75882 1429 aa21.34■■□□□ 1.01
SHMT2-235ENST00000557740 EIF3AQ14152 1382 aaKnown RBP21.34■■□□□ 1.01
SHMT2-235ENST00000557740 HIRIP3Q9BW71 556 aaPredicted RBP21.33■■□□□ 1.01
SHMT2-235ENST00000557740 MINK1Q8N4C8 1332 aaPredicted RBP21.32■■□□□ 1
SHMT2-235ENST00000557740 HAP1P54257 671 aaPredicted RBP21.32■■□□□ 1
SHMT2-235ENST00000557740 LMOD2Q6P5Q4 547 aa21.3■■□□□ 1
SHMT2-235ENST00000557740 SBNO1A3KN83 1393 aa21.3■■□□□ 1
SHMT2-235ENST00000557740 BCL9LQ86UU0 1499 aa21.3■■□□□ 1
SHMT2-235ENST00000557740 RGPD8O14715 1765 aaPredicted RBP21.29■■□□□ 1
SHMT2-235ENST00000557740 ARHGEF10O15013 1369 aa21.29■■□□□ 1
SHMT2-235ENST00000557740 PMFBP1Q8TBY8 1022 aa21.29■■□□□ 1
SHMT2-235ENST00000557740 MARF1Q9Y4F3 1742 aaKnown RBP21.29■■□□□ 1
SHMT2-235ENST00000557740 USP32Q8NFA0 1604 aa21.28■■□□□ 1
SHMT2-235ENST00000557740 TULP4Q9NRJ4 1543 aa21.28■■□□□ 1
SHMT2-235ENST00000557740 ATAD2Q6PL18 1390 aa21.27■■□□□ 1
SHMT2-235ENST00000557740 PLEKHG5O94827 1062 aa21.27■■□□□ 1
SHMT2-235ENST00000557740 GPRASP1Q5JY77 1395 aa21.26■□□□□ 0.99
SHMT2-235ENST00000557740 WASLO00401 505 aaPredicted RBP21.26■□□□□ 0.99
SHMT2-235ENST00000557740 UNC5CLQ8IV45 518 aa21.25■□□□□ 0.99
SHMT2-235ENST00000557740 PRR36Q9H6K5 1346 aa21.25■□□□□ 0.99
SHMT2-235ENST00000557740 SLIT2O94813 1529 aa21.24■□□□□ 0.99
SHMT2-235ENST00000557740 CABLES1Q8TDN4 633 aa21.24■□□□□ 0.99
SHMT2-235ENST00000557740 GJD4Q96KN9 370 aaPredicted RBP21.23■□□□□ 0.99
SHMT2-235ENST00000557740 ARHGEF28Q8N1W1 1705 aaKnown RBP21.22■□□□□ 0.99
SHMT2-235ENST00000557740 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.22■□□□□ 0.99
SHMT2-235ENST00000557740 NGDNQ8NEJ9 315 aaKnown RBP21.21■□□□□ 0.99
SHMT2-235ENST00000557740 RALGAPBQ86X10 1494 aa21.2■□□□□ 0.98
SHMT2-235ENST00000557740 ABCA3Q99758 1704 aa21.18■□□□□ 0.98
SHMT2-235ENST00000557740 ATP7BP35670 1465 aa21.18■□□□□ 0.98
SHMT2-235ENST00000557740 TRPM3Q9HCF6 1732 aaPredicted RBP21.18■□□□□ 0.98
SHMT2-235ENST00000557740 KIAA1210Q9ULL0 1709 aa21.17■□□□□ 0.98
SHMT2-235ENST00000557740 NUDT16Q96DE0 195 aaKnown RBP21.16■□□□□ 0.98
SHMT2-235ENST00000557740 GLI3P10071 1580 aa21.15■□□□□ 0.98
SHMT2-235ENST00000557740 PAK3O75914 559 aaPredicted RBP21.15■□□□□ 0.98
SHMT2-235ENST00000557740 VPS72Q15906 364 aa21.15■□□□□ 0.98
SHMT2-235ENST00000557740 CCDC9Q9Y3X0 531 aaKnown RBP21.15■□□□□ 0.98
SHMT2-235ENST00000557740 PLCH1Q4KWH8 1693 aa21.15■□□□□ 0.98
SHMT2-235ENST00000557740 CDK19Q9BWU1 502 aa21.14■□□□□ 0.97
SHMT2-235ENST00000557740 ITSN1Q15811 1721 aa21.14■□□□□ 0.97
SHMT2-235ENST00000557740 ALS2Q96Q42 1657 aa21.13■□□□□ 0.97
SHMT2-235ENST00000557740 NBPF1Q3BBV0 1214 aa21.13■□□□□ 0.97
SHMT2-235ENST00000557740 NWD2Q9ULI1 1742 aa21.12■□□□□ 0.97
SHMT2-235ENST00000557740 FAM83GA6ND36 823 aa21.12■□□□□ 0.97
SHMT2-235ENST00000557740 CENPJQ9HC77 1338 aaPredicted RBP21.09■□□□□ 0.97
SHMT2-235ENST00000557740 SEPT12Q8IYM1 358 aa21.09■□□□□ 0.97
SHMT2-235ENST00000557740 CCDC125Q86Z20 511 aa21.08■□□□□ 0.97
SHMT2-235ENST00000557740 BTG4Q9NY30 223 aa21.08■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms