RNA–Protein interactions for RNA: ENST00000557626.5

TMEM260-215, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 1,262 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-215ENST00000557626 SLIT2O94813 1529 aa21.13■□□□□ 0.97
TMEM260-215ENST00000557626 ORAI2Q96SN7 254 aa21.12■□□□□ 0.97
TMEM260-215ENST00000557626 MYOM3Q5VTT5 1437 aa21.12■□□□□ 0.97
TMEM260-215ENST00000557626 CROCC2H7BZ55 1655 aa21.11■□□□□ 0.97
TMEM260-215ENST00000557626 PPP1R1BQ9UD71 204 aaPredicted RBP21.1■□□□□ 0.97
TMEM260-215ENST00000557626 UTRNP46939 3433 aa21.1■□□□□ 0.97
TMEM260-215ENST00000557626 NINLQ9Y2I6 1382 aa21.08■□□□□ 0.96
TMEM260-215ENST00000557626 CAMTA1Q9Y6Y1 1673 aa21.07■□□□□ 0.96
TMEM260-215ENST00000557626 PTPN23Q9H3S7 1636 aa21.06■□□□□ 0.96
TMEM260-215ENST00000557626 NRXN3Q9Y4C0 1643 aa21.06■□□□□ 0.96
TMEM260-215ENST00000557626 DISP2A7MBM2 1401 aa21.05■□□□□ 0.96
TMEM260-215ENST00000557626 A0A0G2JS52 829 aa21.05■□□□□ 0.96
TMEM260-215ENST00000557626 ONECUT3O60422 494 aaPredicted RBP21.05■□□□□ 0.96
TMEM260-215ENST00000557626 MYT1Q01538 1121 aa21.05■□□□□ 0.96
TMEM260-215ENST00000557626 CCDC9Q9Y3X0 531 aaKnown RBP21.04■□□□□ 0.96
TMEM260-215ENST00000557626 VPS72Q15906 364 aa21.03■□□□□ 0.96
TMEM260-215ENST00000557626 NPHP3Q7Z494 1330 aa21.03■□□□□ 0.96
TMEM260-215ENST00000557626 TNS1Q9HBL0 1735 aaKnown RBP21.02■□□□□ 0.96
TMEM260-215ENST00000557626 EZH2Q15910 746 aaKnown RBP21.02■□□□□ 0.96
TMEM260-215ENST00000557626 METP08581 1390 aa21.01■□□□□ 0.95
TMEM260-215ENST00000557626 PXDNQ92626 1479 aa21.01■□□□□ 0.95
TMEM260-215ENST00000557626 ABCC5O15440 1437 aa21■□□□□ 0.95
TMEM260-215ENST00000557626 USP32Q8NFA0 1604 aa21■□□□□ 0.95
TMEM260-215ENST00000557626 ADGRB2O60241 1585 aa20.98■□□□□ 0.95
TMEM260-215ENST00000557626 SPON1Q9HCB6 807 aa20.98■□□□□ 0.95
TMEM260-215ENST00000557626 PLCH1Q4KWH8 1693 aa20.97■□□□□ 0.95
TMEM260-215ENST00000557626 ADGRL2O95490 1459 aa20.96■□□□□ 0.95
TMEM260-215ENST00000557626 NWD2Q9ULI1 1742 aa20.96■□□□□ 0.95
TMEM260-215ENST00000557626 XPCQ01831 940 aaPredicted RBP20.96■□□□□ 0.95
TMEM260-215ENST00000557626 CHD4Q14839 1912 aa20.94■□□□□ 0.94
TMEM260-215ENST00000557626 CAMKK2Q96RR4 588 aa20.93■□□□□ 0.94
TMEM260-215ENST00000557626 ANKRD30AQ9BXX3 1397 aa20.93■□□□□ 0.94
TMEM260-215ENST00000557626 KCNQ2O43526 872 aa20.92■□□□□ 0.94
TMEM260-215ENST00000557626 ESCO1Q5FWF5 840 aa20.92■□□□□ 0.94
TMEM260-215ENST00000557626 FAM182BQ5T319 152 aa20.92■□□□□ 0.94
TMEM260-215ENST00000557626 DAPK1P53355 1430 aa20.91■□□□□ 0.94
TMEM260-215ENST00000557626 FAM98CQ17RN3 349 aaKnown RBP20.91■□□□□ 0.94
TMEM260-215ENST00000557626 IQGAP3Q86VI3 1631 aa20.9■□□□□ 0.94
TMEM260-215ENST00000557626 PARD3Q8TEW0 1356 aa20.9■□□□□ 0.94
TMEM260-215ENST00000557626 FOXO3O43524 673 aa20.9■□□□□ 0.94
TMEM260-215ENST00000557626 RREB1Q92766 1687 aa20.89■□□□□ 0.94
TMEM260-215ENST00000557626 HAP1P54257 671 aaPredicted RBP20.89■□□□□ 0.93
TMEM260-215ENST00000557626 LRPPRCP42704 1394 aaKnown RBP20.88■□□□□ 0.93
TMEM260-215ENST00000557626 NUP188Q5SRE5 1749 aa20.88■□□□□ 0.93
TMEM260-215ENST00000557626 NBPF8Q3BBV2 869 aa20.88■□□□□ 0.93
TMEM260-215ENST00000557626 NBPF14Q5TI25 921 aa20.88■□□□□ 0.93
TMEM260-215ENST00000557626 CHIC2Q9UKJ5 165 aa20.87■□□□□ 0.93
TMEM260-215ENST00000557626 GIGYF1O75420 1035 aaPredicted RBP20.86■□□□□ 0.93
TMEM260-215ENST00000557626 E9PCH4 1651 aa20.86■□□□□ 0.93
TMEM260-215ENST00000557626 ROBO2Q9HCK4 1378 aa20.84■□□□□ 0.93
TMEM260-215ENST00000557626 SPATA31A3Q5VYP0 1347 aa20.83■□□□□ 0.93
TMEM260-215ENST00000557626 TRIM37O94972 964 aa20.83■□□□□ 0.93
TMEM260-215ENST00000557626 APBA3O96018 575 aa20.82■□□□□ 0.92
TMEM260-215ENST00000557626 NRAPQ86VF7 1730 aa20.8■□□□□ 0.92
TMEM260-215ENST00000557626 CDC42BPGQ6DT37 1551 aa20.8■□□□□ 0.92
TMEM260-215ENST00000557626 NRKQ7Z2Y5 1582 aa20.8■□□□□ 0.92
TMEM260-215ENST00000557626 ZNF326Q5BKZ1 582 aaKnown RBP20.79■□□□□ 0.92
TMEM260-215ENST00000557626 PLEKHG5O94827 1062 aa20.77■□□□□ 0.92
TMEM260-215ENST00000557626 ABCA3Q99758 1704 aa20.77■□□□□ 0.92
TMEM260-215ENST00000557626 HFM1A2PYH4 1435 aa20.77■□□□□ 0.91
TMEM260-215ENST00000557626 THSD7AQ9UPZ6 1657 aa20.77■□□□□ 0.91
TMEM260-215ENST00000557626 CABLES1Q8TDN4 633 aa20.76■□□□□ 0.91
TMEM260-215ENST00000557626 CCDC144AA2RUR9 1427 aa20.76■□□□□ 0.91
TMEM260-215ENST00000557626 FAM196AQ6ZSG2 479 aa20.75■□□□□ 0.91
TMEM260-215ENST00000557626 ANKRD50Q9ULJ7 1429 aa20.75■□□□□ 0.91
TMEM260-215ENST00000557626 MYOM1P52179 1685 aa20.73■□□□□ 0.91
TMEM260-215ENST00000557626 TNS3Q68CZ2 1445 aa20.72■□□□□ 0.91
TMEM260-215ENST00000557626 PRAG1Q86YV5 1406 aa20.72■□□□□ 0.91
TMEM260-215ENST00000557626 FAM83GA6ND36 823 aa20.72■□□□□ 0.91
TMEM260-215ENST00000557626 KIF1AQ12756 1690 aa20.71■□□□□ 0.91
TMEM260-215ENST00000557626 KANK4Q5T7N3 995 aaPredicted RBP20.71■□□□□ 0.91
TMEM260-215ENST00000557626 NUTM2FA1L443 756 aa20.7■□□□□ 0.9
TMEM260-215ENST00000557626 KRT28Q7Z3Y7 464 aa20.7■□□□□ 0.9
TMEM260-215ENST00000557626 BTG4Q9NY30 223 aa20.7■□□□□ 0.9
TMEM260-215ENST00000557626 NEXMIFQ5QGS0 1516 aa20.68■□□□□ 0.9
TMEM260-215ENST00000557626 CASZ1Q86V15 1759 aa20.68■□□□□ 0.9
TMEM260-215ENST00000557626 SPATA31A5Q5VU36 1347 aa20.68■□□□□ 0.9
TMEM260-215ENST00000557626 SPATA31A7Q8IWB4 1347 aa20.68■□□□□ 0.9
TMEM260-215ENST00000557626 NAIPQ13075 1403 aa20.65■□□□□ 0.9
TMEM260-215ENST00000557626 SYT17Q9BSW7 474 aa20.65■□□□□ 0.9
TMEM260-215ENST00000557626 COL14A1Q05707 1796 aaKnown RBP20.64■□□□□ 0.9
TMEM260-215ENST00000557626 LMOD2Q6P5Q4 547 aa20.64■□□□□ 0.89
TMEM260-215ENST00000557626 FHDC1Q9C0D6 1143 aaPredicted RBP20.64■□□□□ 0.89
TMEM260-215ENST00000557626 ARHGEF10O15013 1369 aa20.62■□□□□ 0.89
TMEM260-215ENST00000557626 PSME1Q06323 249 aa20.62■□□□□ 0.89
TMEM260-215ENST00000557626 DLC1Q96QB1 1528 aa20.62■□□□□ 0.89
TMEM260-215ENST00000557626 GOLGB1Q14789 3259 aaKnown RBP20.61■□□□□ 0.89
TMEM260-215ENST00000557626 ZBTB7AO95365 584 aa20.61■□□□□ 0.89
TMEM260-215ENST00000557626 PTGER2P43116 358 aa20.6■□□□□ 0.89
TMEM260-215ENST00000557626 RRBP1Q9P2E9 1410 aaKnown RBP20.6■□□□□ 0.89
TMEM260-215ENST00000557626 FMN2Q9NZ56 1722 aa20.58■□□□□ 0.89
TMEM260-215ENST00000557626 SBNO1A3KN83 1393 aa20.58■□□□□ 0.88
TMEM260-215ENST00000557626 SHANK3Q9BYB0 1731 aa20.57■□□□□ 0.88
TMEM260-215ENST00000557626 ATF5Q9Y2D1 282 aaPredicted RBP20.57■□□□□ 0.88
TMEM260-215ENST00000557626 PDGFDQ9GZP0 370 aaPredicted RBP20.56■□□□□ 0.88
TMEM260-215ENST00000557626 ANO8Q9HCE9 1232 aaPredicted RBP20.56■□□□□ 0.88
TMEM260-215ENST00000557626 PDE3BQ13370 1112 aa20.54■□□□□ 0.88
TMEM260-215ENST00000557626 SPATA31A1Q5TZJ5 1347 aa20.53■□□□□ 0.88
TMEM260-215ENST00000557626 HSPA6P17066 643 aa20.53■□□□□ 0.88
TMEM260-215ENST00000557626 GPR162Q16538 588 aa20.53■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms