RNA–Protein interactions for RNA: ENST00000557352.1

VRK1-207, Transcript of vaccinia related kinase 1, humanhuman

TSL 5

Gene VRK1, Length 599 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-207ENST00000557352 HOXA2O43364 376 aa10.85□□□□□ -0.67
VRK1-207ENST00000557352 Q3C1V9 767 aa10.85□□□□□ -0.67
VRK1-207ENST00000557352 SLC24A1O60721 1099 aa10.84□□□□□ -0.67
VRK1-207ENST00000557352 MSS51Q4VC12 460 aa10.84□□□□□ -0.67
VRK1-207ENST00000557352 TNFRSF10AO00220 468 aa10.83□□□□□ -0.68
VRK1-207ENST00000557352 AK7Q96M32 723 aa10.83□□□□□ -0.68
VRK1-207ENST00000557352 TRIM66O15016 1216 aa10.82□□□□□ -0.68
VRK1-207ENST00000557352 RPIAP49247 311 aa10.82□□□□□ -0.68
VRK1-207ENST00000557352 GIGYF2Q6Y7W6 1299 aaKnown RBP10.82□□□□□ -0.68
VRK1-207ENST00000557352 NUTM1Q86Y26 1132 aa10.82□□□□□ -0.68
VRK1-207ENST00000557352 PKD2L1Q9P0L9 805 aa10.82□□□□□ -0.68
VRK1-207ENST00000557352 GUCA2AQ02747 115 aa10.81□□□□□ -0.68
VRK1-207ENST00000557352 DGAT1O75907 488 aa10.8□□□□□ -0.68
VRK1-207ENST00000557352 MYT1Q01538 1121 aa10.79□□□□□ -0.68
VRK1-207ENST00000557352 PKDCCQ504Y2 493 aa10.79□□□□□ -0.68
VRK1-207ENST00000557352 PARP9Q8IXQ6 854 aa10.79□□□□□ -0.68
VRK1-207ENST00000557352 USB1Q9BQ65 265 aaKnown RBP10.79□□□□□ -0.68
VRK1-207ENST00000557352 MMP16P51512 607 aa10.78□□□□□ -0.68
VRK1-207ENST00000557352 SPIRE2Q8WWL2 714 aa10.78□□□□□ -0.68
VRK1-207ENST00000557352 CD2BP2O95400 341 aaKnown RBP10.77□□□□□ -0.69
VRK1-207ENST00000557352 FOXC1Q12948 553 aa10.77□□□□□ -0.69
VRK1-207ENST00000557352 BCANQ96GW7 911 aa10.76□□□□□ -0.69
VRK1-207ENST00000557352 SLC24A3Q9HC58 644 aa10.76□□□□□ -0.69
VRK1-207ENST00000557352 FAM187AA6NFU0 413 aa10.75□□□□□ -0.69
VRK1-207ENST00000557352 SYMPKQ92797 1274 aaKnown RBP10.75□□□□□ -0.69
VRK1-207ENST00000557352 BEGAINQ9BUH8 593 aa10.75□□□□□ -0.69
VRK1-207ENST00000557352 DXOO77932 396 aaKnown RBP10.74□□□□□ -0.69
VRK1-207ENST00000557352 FDX1P10109 184 aa10.74□□□□□ -0.69
VRK1-207ENST00000557352 PCDHGC3Q9UN70 934 aa10.74□□□□□ -0.69
VRK1-207ENST00000557352 MS4A1P11836 297 aa10.73□□□□□ -0.69
VRK1-207ENST00000557352 NDUFV2P19404 249 aa10.73□□□□□ -0.69
VRK1-207ENST00000557352 ZNF787Q6DD87 383 aa10.73□□□□□ -0.69
VRK1-207ENST00000557352 TOR4AQ9NXH8 423 aa10.73□□□□□ -0.69
VRK1-207ENST00000557352 MOXD2PA6NHM9 499 aa10.72□□□□□ -0.69
VRK1-207ENST00000557352 PDE4DQ08499 809 aa10.72□□□□□ -0.69
VRK1-207ENST00000557352 ZBTB24O43167 697 aaPredicted RBP10.71□□□□□ -0.69
VRK1-207ENST00000557352 RETREG3Q86VR2 466 aa10.7□□□□□ -0.7
VRK1-207ENST00000557352 TRIM32Q13049 653 aa10.69□□□□□ -0.7
VRK1-207ENST00000557352 TBC1D2Q9BYX2 928 aa10.69□□□□□ -0.7
VRK1-207ENST00000557352 C6orf229H3BNL8 230 aa10.68□□□□□ -0.7
VRK1-207ENST00000557352 AAASQ9NRG9 546 aa10.68□□□□□ -0.7
VRK1-207ENST00000557352 POTECB2RU33 542 aa10.67□□□□□ -0.7
VRK1-207ENST00000557352 ST8SIA5O15466 376 aa10.67□□□□□ -0.7
VRK1-207ENST00000557352 JUNDP17535 347 aa10.67□□□□□ -0.7
VRK1-207ENST00000557352 DIXDC1Q155Q3 683 aa10.66□□□□□ -0.7
VRK1-207ENST00000557352 CYP4X1Q8N118 509 aa10.66□□□□□ -0.7
VRK1-207ENST00000557352 WNT7AO00755 349 aa10.65□□□□□ -0.7
VRK1-207ENST00000557352 AVPP01185 164 aa10.65□□□□□ -0.7
VRK1-207ENST00000557352 CCDC24Q8N4L8 307 aa10.65□□□□□ -0.7
VRK1-207ENST00000557352 GJA5P36382 358 aa10.64□□□□□ -0.71
VRK1-207ENST00000557352 RSBN1LQ6PCB5 846 aaPredicted RBP10.64□□□□□ -0.71
VRK1-207ENST00000557352 CRIPAKQ8N1N5 446 aa10.63□□□□□ -0.71
VRK1-207ENST00000557352 SPTLC1O15269 473 aa10.62□□□□□ -0.71
VRK1-207ENST00000557352 MTMR2Q13614 643 aa10.62□□□□□ -0.71
VRK1-207ENST00000557352 MRGPRX2Q96LB1 330 aa10.62□□□□□ -0.71
VRK1-207ENST00000557352 PCDHB15Q9Y5E8 787 aa10.62□□□□□ -0.71
VRK1-207ENST00000557352 PRR7Q8TB68 274 aa10.61□□□□□ -0.71
VRK1-207ENST00000557352 ZNF775Q96BV0 537 aaPredicted RBP10.61□□□□□ -0.71
VRK1-207ENST00000557352 NUDT12Q9BQG2 462 aa10.61□□□□□ -0.71
VRK1-207ENST00000557352 TTC24A2A3L6 582 aaPredicted RBP10.6□□□□□ -0.71
VRK1-207ENST00000557352 SPDYE5A6NIY4 337 aa10.6□□□□□ -0.71
VRK1-207ENST00000557352 SKOR1P84550 965 aa10.6□□□□□ -0.71
VRK1-207ENST00000557352 RIC3Q7Z5B4 369 aa10.6□□□□□ -0.71
VRK1-207ENST00000557352 SNIP1Q8TAD8 396 aaKnown RBP10.6□□□□□ -0.71
VRK1-207ENST00000557352 SMPD1P17405 629 aa10.59□□□□□ -0.71
VRK1-207ENST00000557352 PTCRAQ6ISU1 281 aaPredicted RBP10.59□□□□□ -0.71
VRK1-207ENST00000557352 DACH1Q9UI36 760 aa10.59□□□□□ -0.71
VRK1-207ENST00000557352 MYSM1Q5VVJ2 828 aa10.58□□□□□ -0.72
VRK1-207ENST00000557352 HRCP23327 699 aa10.57□□□□□ -0.72
VRK1-207ENST00000557352 WNT7BP56706 349 aa10.57□□□□□ -0.72
VRK1-207ENST00000557352 PTPRNQ16849 979 aa10.57□□□□□ -0.72
VRK1-207ENST00000557352 RC3H1Q5TC82 1133 aaKnown RBP10.57□□□□□ -0.72
VRK1-207ENST00000557352 J3QL48 77 aa10.56□□□□□ -0.72
VRK1-207ENST00000557352 CCNYL3P0C7X3 344 aa10.56□□□□□ -0.72
VRK1-207ENST00000557352 SMCPP49901 116 aaPredicted RBP10.56□□□□□ -0.72
VRK1-207ENST00000557352 CTC1Q2NKJ3 1217 aa10.56□□□□□ -0.72
VRK1-207ENST00000557352 DESI1Q6ICB0 168 aa10.56□□□□□ -0.72
VRK1-207ENST00000557352 ZBTB3Q9H5J0 574 aa10.56□□□□□ -0.72
VRK1-207ENST00000557352 AXIN1O15169 862 aa10.55□□□□□ -0.72
VRK1-207ENST00000557352 CSPP1Q1MSJ5 1256 aa10.55□□□□□ -0.72
VRK1-207ENST00000557352 PRPF38BQ5VTL8 546 aaKnown RBP10.55□□□□□ -0.72
VRK1-207ENST00000557352 LIMD1Q9UGP4 676 aa10.55□□□□□ -0.72
VRK1-207ENST00000557352 CFAP99D6REC4 459 aa10.54□□□□□ -0.72
VRK1-207ENST00000557352 CABLES1Q8TDN4 633 aa10.54□□□□□ -0.72
VRK1-207ENST00000557352 EVA1BQ9NVM1 165 aa10.54□□□□□ -0.72
VRK1-207ENST00000557352 TUSC1Q2TAM9 212 aa10.52□□□□□ -0.73
VRK1-207ENST00000557352 GPBP1L1Q9HC44 474 aaPredicted RBP10.52□□□□□ -0.73
VRK1-207ENST00000557352 KCNH2Q12809 1159 aa10.51□□□□□ -0.73
VRK1-207ENST00000557352 QPCTQ16769 361 aa10.51□□□□□ -0.73
VRK1-207ENST00000557352 LYPD8Q6UX82 237 aa10.51□□□□□ -0.73
VRK1-207ENST00000557352 GMPR2Q9P2T1 348 aaKnown RBP10.51□□□□□ -0.73
VRK1-207ENST00000557352 HPS1Q92902 700 aa10.5□□□□□ -0.73
VRK1-207ENST00000557352 RSPH6AQ9H0K4 717 aa10.5□□□□□ -0.73
VRK1-207ENST00000557352 UNC93B1Q9H1C4 597 aa10.5□□□□□ -0.73
VRK1-207ENST00000557352 KDM4CQ9H3R0 1056 aa10.5□□□□□ -0.73
VRK1-207ENST00000557352 SIAH2O43255 324 aa10.49□□□□□ -0.73
VRK1-207ENST00000557352 LILRB3O75022 631 aa10.49□□□□□ -0.73
VRK1-207ENST00000557352 NUTM2BA6NNL0 878 aaPredicted RBP10.48□□□□□ -0.73
VRK1-207ENST00000557352 NUTM2EB1AL46 878 aaPredicted RBP10.48□□□□□ -0.73
VRK1-207ENST00000557352 CLK2P49760 499 aaKnown RBP10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms