RNA–Protein interactions for RNA: ENST00000557060.1

SYNE2-225, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 3,203 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-225ENST00000557060 LAMC1P11047 1609 aa7.85□□□□□ -1.15
SYNE2-225ENST00000557060 PLEKHH1Q9ULM0 1364 aa7.85□□□□□ -1.15
SYNE2-225ENST00000557060 CLTCQ00610 1675 aaKnown RBP7.85□□□□□ -1.15
SYNE2-225ENST00000557060 CCDC136Q96JN2 1154 aa7.85□□□□□ -1.15
SYNE2-225ENST00000557060 CGNL1Q0VF96 1302 aa7.84□□□□□ -1.15
SYNE2-225ENST00000557060 MYO5BQ9ULV0 1848 aa7.84□□□□□ -1.15
SYNE2-225ENST00000557060 SLC24A1O60721 1099 aa7.84□□□□□ -1.15
SYNE2-225ENST00000557060 NEXMIFQ5QGS0 1516 aa7.84□□□□□ -1.15
SYNE2-225ENST00000557060 ASXL1Q8IXJ9 1541 aa7.84□□□□□ -1.15
SYNE2-225ENST00000557060 ARHGAP31Q2M1Z3 1444 aa7.84□□□□□ -1.15
SYNE2-225ENST00000557060 PIK3C2BO00750 1634 aa7.84□□□□□ -1.15
SYNE2-225ENST00000557060 NRXN1Q9ULB1 1477 aa7.84□□□□□ -1.15
SYNE2-225ENST00000557060 U2AF1L5P0DN76 240 aaPredicted RBP7.84□□□□□ -1.16
SYNE2-225ENST00000557060 U2AF1Q01081 240 aaKnown RBP eCLIP7.84□□□□□ -1.16
SYNE2-225ENST00000557060 RIMS2Q9UQ26 1411 aa7.84□□□□□ -1.16
SYNE2-225ENST00000557060 PPLO60437 1756 aa7.84□□□□□ -1.16
SYNE2-225ENST00000557060 ADGRB1O14514 1584 aa7.83□□□□□ -1.16
SYNE2-225ENST00000557060 PPP4R2Q9NY27 417 aa7.83□□□□□ -1.16
SYNE2-225ENST00000557060 SMG6Q86US8 1419 aaKnown RBP7.83□□□□□ -1.16
SYNE2-225ENST00000557060 YTHDC2Q9H6S0 1430 aaKnown RBP7.83□□□□□ -1.16
SYNE2-225ENST00000557060 KDM5AP29375 1690 aaKnown RBP7.83□□□□□ -1.16
SYNE2-225ENST00000557060 PREX1Q8TCU6 1659 aa7.83□□□□□ -1.16
SYNE2-225ENST00000557060 LTKP29376 864 aa7.82□□□□□ -1.16
SYNE2-225ENST00000557060 METP08581 1390 aa7.82□□□□□ -1.16
SYNE2-225ENST00000557060 KIF13AQ9H1H9 1805 aa7.82□□□□□ -1.16
SYNE2-225ENST00000557060 ZMYM4Q5VZL5 1548 aa7.82□□□□□ -1.16
SYNE2-225ENST00000557060 SLC4A2P04920 1241 aa7.82□□□□□ -1.16
SYNE2-225ENST00000557060 EXOC6Q8TAG9 804 aa7.82□□□□□ -1.16
SYNE2-225ENST00000557060 SPINK5Q9NQ38 1064 aaPredicted RBP7.82□□□□□ -1.16
SYNE2-225ENST00000557060 DMRT2Q9Y5R5 561 aa7.82□□□□□ -1.16
SYNE2-225ENST00000557060 A0A1W2PP64 1363 aa7.82□□□□□ -1.16
SYNE2-225ENST00000557060 TERF2IPQ9NYB0 399 aa7.82□□□□□ -1.16
SYNE2-225ENST00000557060 TNRQ92752 1358 aa7.82□□□□□ -1.16
SYNE2-225ENST00000557060 A2ML1A8K2U0 1454 aa7.81□□□□□ -1.16
SYNE2-225ENST00000557060 HDGFL2Q7Z4V5 671 aaPredicted RBP7.81□□□□□ -1.16
SYNE2-225ENST00000557060 ZRANB1Q9UGI0 708 aa7.81□□□□□ -1.16
SYNE2-225ENST00000557060 IFT172Q9UG01 1749 aa7.81□□□□□ -1.16
SYNE2-225ENST00000557060 QRICH2Q9H0J4 1663 aa7.81□□□□□ -1.16
SYNE2-225ENST00000557060 TMEM131LA2VDJ0 1609 aa7.81□□□□□ -1.16
SYNE2-225ENST00000557060 RRP1P56182 461 aaKnown RBP7.8□□□□□ -1.16
SYNE2-225ENST00000557060 GOLGA2Q08379 1002 aa7.8□□□□□ -1.16
SYNE2-225ENST00000557060 FYB1O15117 783 aa7.8□□□□□ -1.16
SYNE2-225ENST00000557060 CFAP53Q96M91 514 aa7.8□□□□□ -1.16
SYNE2-225ENST00000557060 MYOM1P52179 1685 aa7.8□□□□□ -1.16
SYNE2-225ENST00000557060 MSH5O43196 834 aa7.8□□□□□ -1.16
SYNE2-225ENST00000557060 C20orf194Q5TEA3 1177 aa7.8□□□□□ -1.16
SYNE2-225ENST00000557060 SKAP1Q86WV1 359 aa7.8□□□□□ -1.16
SYNE2-225ENST00000557060 BCL2L13Q9BXK5 485 aa7.8□□□□□ -1.16
SYNE2-225ENST00000557060 EID1Q9Y6B2 187 aa7.8□□□□□ -1.16
SYNE2-225ENST00000557060 TULP4Q9NRJ4 1543 aa7.79□□□□□ -1.16
SYNE2-225ENST00000557060 SBNO2Q9Y2G9 1366 aa7.79□□□□□ -1.16
SYNE2-225ENST00000557060 HDGFP51858 240 aaKnown RBP7.79□□□□□ -1.16
SYNE2-225ENST00000557060 KIAA1210Q9ULL0 1709 aa7.79□□□□□ -1.16
SYNE2-225ENST00000557060 NME9Q86XW9 330 aa7.79□□□□□ -1.16
SYNE2-225ENST00000557060 ABCF1Q8NE71 845 aaKnown RBP eCLIP7.79□□□□□ -1.16
SYNE2-225ENST00000557060 PMFBP1Q8TBY8 1022 aa7.79□□□□□ -1.16
SYNE2-225ENST00000557060 ANKRD36BQ8N2N9 1353 aa7.79□□□□□ -1.16
SYNE2-225ENST00000557060 TCP11L2Q8N4U5 519 aa7.78□□□□□ -1.16
SYNE2-225ENST00000557060 ARHGEF40Q8TER5 1519 aa7.78□□□□□ -1.16
SYNE2-225ENST00000557060 ALKQ9UM73 1620 aa7.78□□□□□ -1.16
SYNE2-225ENST00000557060 ZC3H13Q5T200 1668 aaKnown RBP7.78□□□□□ -1.16
SYNE2-225ENST00000557060 SETBP1Q9Y6X0 1596 aa7.78□□□□□ -1.16
SYNE2-225ENST00000557060 HMOX1P09601 288 aa7.78□□□□□ -1.16
SYNE2-225ENST00000557060 PDE3BQ13370 1112 aa7.78□□□□□ -1.16
SYNE2-225ENST00000557060 RRS1Q15050 365 aaKnown RBP7.78□□□□□ -1.16
SYNE2-225ENST00000557060 FRAT1Q92837 279 aaPredicted RBP7.78□□□□□ -1.16
SYNE2-225ENST00000557060 NUDT16Q96DE0 195 aaKnown RBP7.78□□□□□ -1.16
SYNE2-225ENST00000557060 PTPRMP28827 1452 aa7.77□□□□□ -1.16
SYNE2-225ENST00000557060 NEURL4Q96JN8 1562 aa7.77□□□□□ -1.16
SYNE2-225ENST00000557060 WASLO00401 505 aaPredicted RBP7.77□□□□□ -1.17
SYNE2-225ENST00000557060 BCAR3O75815 825 aa7.77□□□□□ -1.17
SYNE2-225ENST00000557060 CANXP27824 592 aaKnown RBP7.77□□□□□ -1.17
SYNE2-225ENST00000557060 RNF216Q9NWF9 866 aaPredicted RBP7.77□□□□□ -1.17
SYNE2-225ENST00000557060 DUSP27Q5VZP5 1158 aa7.77□□□□□ -1.17
SYNE2-225ENST00000557060 NUTM2GQ5VZR2 741 aa7.77□□□□□ -1.17
SYNE2-225ENST00000557060 CRBNQ96SW2 442 aa7.77□□□□□ -1.17
SYNE2-225ENST00000557060 RBM19Q9Y4C8 960 aaKnown RBP7.77□□□□□ -1.17
SYNE2-225ENST00000557060 AGLP35573 1532 aa7.77□□□□□ -1.17
SYNE2-225ENST00000557060 C14orf37Q86TY3 774 aa7.76□□□□□ -1.17
SYNE2-225ENST00000557060 LAS1LQ9Y4W2 734 aaKnown RBP7.76□□□□□ -1.17
SYNE2-225ENST00000557060 ATAD2Q6PL18 1390 aa7.76□□□□□ -1.17
SYNE2-225ENST00000557060 TMEM2Q9UHN6 1383 aa7.76□□□□□ -1.17
SYNE2-225ENST00000557060 BLMP54132 1417 aaPredicted RBP7.76□□□□□ -1.17
SYNE2-225ENST00000557060 AMOTL2Q9Y2J4 779 aa7.76□□□□□ -1.17
SYNE2-225ENST00000557060 EMILIN1Q9Y6C2 1016 aa7.76□□□□□ -1.17
SYNE2-225ENST00000557060 ZFYVE9O95405 1425 aa7.76□□□□□ -1.17
SYNE2-225ENST00000557060 WWC1Q8IX03 1113 aa7.76□□□□□ -1.17
SYNE2-225ENST00000557060 ARHGEF28Q8N1W1 1705 aaKnown RBP7.76□□□□□ -1.17
SYNE2-225ENST00000557060 ROBO2Q9HCK4 1378 aa7.75□□□□□ -1.17
SYNE2-225ENST00000557060 TSR2Q969E8 191 aaKnown RBP7.75□□□□□ -1.17
SYNE2-225ENST00000557060 NPC1L1Q9UHC9 1359 aa7.75□□□□□ -1.17
SYNE2-225ENST00000557060 MAPK8IP3Q9UPT6 1336 aa7.75□□□□□ -1.17
SYNE2-225ENST00000557060 CLUAP1Q96AJ1 413 aa7.74□□□□□ -1.17
SYNE2-225ENST00000557060 RUNDC1Q96C34 613 aa7.74□□□□□ -1.17
SYNE2-225ENST00000557060 CCDC61Q9Y6R9 512 aa7.74□□□□□ -1.17
SYNE2-225ENST00000557060 PPIP5K1Q6PFW1 1433 aa7.74□□□□□ -1.17
SYNE2-225ENST00000557060 ZBTB7CA1YPR0 619 aa7.74□□□□□ -1.17
SYNE2-225ENST00000557060 PAK3O75914 559 aaPredicted RBP7.74□□□□□ -1.17
SYNE2-225ENST00000557060 SLFN5Q08AF3 891 aa7.74□□□□□ -1.17
SYNE2-225ENST00000557060 SPATA31D1Q6ZQQ2 1576 aa7.74□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms