RNA–Protein interactions for RNA: ENST00000556929.5

TMEM260-213, Transcript of transmembrane protein 260, humanhuman

TSL 4

Gene TMEM260, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-213ENST00000556929 QRICH2Q9H0J4 1663 aa13.69□□□□□ -0.22
TMEM260-213ENST00000556929 NKTRP30414 1462 aaKnown RBP13.68□□□□□ -0.22
TMEM260-213ENST00000556929 PTCH1Q13635 1447 aa13.68□□□□□ -0.22
TMEM260-213ENST00000556929 FAM135BQ49AJ0 1406 aa13.68□□□□□ -0.22
TMEM260-213ENST00000556929 POGKQ9P215 609 aa13.68□□□□□ -0.22
TMEM260-213ENST00000556929 SLC24A1O60721 1099 aa13.67□□□□□ -0.22
TMEM260-213ENST00000556929 CENPJQ9HC77 1338 aaPredicted RBP13.66□□□□□ -0.22
TMEM260-213ENST00000556929 HSPA5P11021 654 aaKnown RBP13.66□□□□□ -0.22
TMEM260-213ENST00000556929 PRAM1Q96QH2 718 aa13.66□□□□□ -0.22
TMEM260-213ENST00000556929 ST20-MTHFSA0A0A6YYL1 179 aa13.65□□□□□ -0.22
TMEM260-213ENST00000556929 ROBO2Q9HCK4 1378 aa13.65□□□□□ -0.22
TMEM260-213ENST00000556929 ZNF335Q9H4Z2 1342 aaPredicted RBP13.64□□□□□ -0.23
TMEM260-213ENST00000556929 WAPLQ7Z5K2 1190 aa13.64□□□□□ -0.23
TMEM260-213ENST00000556929 PROSER2Q86WR7 435 aaPredicted RBP13.64□□□□□ -0.23
TMEM260-213ENST00000556929 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.63□□□□□ -0.23
TMEM260-213ENST00000556929 XIRP1Q702N8 1843 aaKnown RBP13.62□□□□□ -0.23
TMEM260-213ENST00000556929 SBNO2Q9Y2G9 1366 aa13.62□□□□□ -0.23
TMEM260-213ENST00000556929 SAFB2Q14151 953 aaKnown RBP eCLIP13.62□□□□□ -0.23
TMEM260-213ENST00000556929 NCOA3Q9Y6Q9 1424 aa13.62□□□□□ -0.23
TMEM260-213ENST00000556929 NALCNQ8IZF0 1738 aa13.61□□□□□ -0.23
TMEM260-213ENST00000556929 PLEKHH1Q9ULM0 1364 aa13.61□□□□□ -0.23
TMEM260-213ENST00000556929 HIRIP3Q9BW71 556 aaPredicted RBP13.61□□□□□ -0.23
TMEM260-213ENST00000556929 ADGRB2O60241 1585 aa13.6□□□□□ -0.23
TMEM260-213ENST00000556929 TMF1P82094 1093 aa13.6□□□□□ -0.23
TMEM260-213ENST00000556929 C14orf37Q86TY3 774 aa13.6□□□□□ -0.23
TMEM260-213ENST00000556929 LTBP4Q8N2S1 1624 aa13.6□□□□□ -0.23
TMEM260-213ENST00000556929 MINK1Q8N4C8 1332 aaPredicted RBP13.6□□□□□ -0.23
TMEM260-213ENST00000556929 LRRC7Q96NW7 1537 aa13.59□□□□□ -0.23
TMEM260-213ENST00000556929 TMEM94Q12767 1356 aa13.58□□□□□ -0.23
TMEM260-213ENST00000556929 TESK2Q96S53 571 aa13.58□□□□□ -0.24
TMEM260-213ENST00000556929 EVC2Q86UK5 1308 aa13.58□□□□□ -0.24
TMEM260-213ENST00000556929 ADGRL3Q9HAR2 1447 aa13.57□□□□□ -0.24
TMEM260-213ENST00000556929 CDCA8Q53HL2 280 aa13.57□□□□□ -0.24
TMEM260-213ENST00000556929 CDC42BPGQ6DT37 1551 aa13.57□□□□□ -0.24
TMEM260-213ENST00000556929 FMN2Q9NZ56 1722 aa13.56□□□□□ -0.24
TMEM260-213ENST00000556929 TULP4Q9NRJ4 1543 aa13.56□□□□□ -0.24
TMEM260-213ENST00000556929 ZNF316A6NFI3 1004 aaPredicted RBP13.56□□□□□ -0.24
TMEM260-213ENST00000556929 RBM33Q96EV2 1170 aaKnown RBP13.56□□□□□ -0.24
TMEM260-213ENST00000556929 MSH6P52701 1360 aa13.56□□□□□ -0.24
TMEM260-213ENST00000556929 WASLO00401 505 aaPredicted RBP13.55□□□□□ -0.24
TMEM260-213ENST00000556929 C19orf44Q9H6X5 657 aa13.55□□□□□ -0.24
TMEM260-213ENST00000556929 ITSN1Q15811 1721 aa13.55□□□□□ -0.24
TMEM260-213ENST00000556929 SRPK2P78362 688 aaKnown RBP13.54□□□□□ -0.24
TMEM260-213ENST00000556929 CDK19Q9BWU1 502 aa13.54□□□□□ -0.24
TMEM260-213ENST00000556929 DCCP43146 1447 aa13.54□□□□□ -0.24
TMEM260-213ENST00000556929 RGPD8O14715 1765 aaPredicted RBP13.53□□□□□ -0.24
TMEM260-213ENST00000556929 PUS7Q96PZ0 661 aaKnown RBP13.53□□□□□ -0.24
TMEM260-213ENST00000556929 DISP3Q9P2K9 1392 aa13.53□□□□□ -0.24
TMEM260-213ENST00000556929 ATF3P18847 181 aa13.52□□□□□ -0.25
TMEM260-213ENST00000556929 SPINK5Q9NQ38 1064 aaPredicted RBP13.52□□□□□ -0.25
TMEM260-213ENST00000556929 IQSEC2Q5JU85 1478 aa13.51□□□□□ -0.25
TMEM260-213ENST00000556929 CADPS2Q86UW7 1296 aa13.51□□□□□ -0.25
TMEM260-213ENST00000556929 POLR3GLQ9BT43 218 aa13.51□□□□□ -0.25
TMEM260-213ENST00000556929 CABP2Q9NPB3 220 aa13.51□□□□□ -0.25
TMEM260-213ENST00000556929 USP32Q8NFA0 1604 aa13.5□□□□□ -0.25
TMEM260-213ENST00000556929 ATAD2Q6PL18 1390 aa13.5□□□□□ -0.25
TMEM260-213ENST00000556929 TOPAZ1Q8N9V7 1692 aa13.5□□□□□ -0.25
TMEM260-213ENST00000556929 ANKARQ7Z5J8 1434 aa13.49□□□□□ -0.25
TMEM260-213ENST00000556929 CCDC7Q96M83 1385 aa13.49□□□□□ -0.25
TMEM260-213ENST00000556929 KIF7Q2M1P5 1343 aa13.49□□□□□ -0.25
TMEM260-213ENST00000556929 C11orf95C9JLR9 678 aaPredicted RBP13.49□□□□□ -0.25
TMEM260-213ENST00000556929 WASHC2AQ641Q2 1341 aa13.48□□□□□ -0.25
TMEM260-213ENST00000556929 MYOM1P52179 1685 aa13.48□□□□□ -0.25
TMEM260-213ENST00000556929 CAPN15O75808 1086 aa13.48□□□□□ -0.25
TMEM260-213ENST00000556929 NUDT16Q96DE0 195 aaKnown RBP13.48□□□□□ -0.25
TMEM260-213ENST00000556929 ATP7BP35670 1465 aa13.48□□□□□ -0.25
TMEM260-213ENST00000556929 NUTM2FA1L443 756 aa13.47□□□□□ -0.25
TMEM260-213ENST00000556929 CCDC61Q9Y6R9 512 aa13.47□□□□□ -0.25
TMEM260-213ENST00000556929 KIF1AQ12756 1690 aa13.47□□□□□ -0.25
TMEM260-213ENST00000556929 NINLQ9Y2I6 1382 aa13.46□□□□□ -0.25
TMEM260-213ENST00000556929 CERKQ8TCT0 537 aa13.46□□□□□ -0.25
TMEM260-213ENST00000556929 TMC1Q8TDI8 760 aa13.46□□□□□ -0.25
TMEM260-213ENST00000556929 MST1RQ04912 1400 aa13.46□□□□□ -0.26
TMEM260-213ENST00000556929 PPIP5K1Q6PFW1 1433 aa13.46□□□□□ -0.26
TMEM260-213ENST00000556929 PRR36Q9H6K5 1346 aa13.45□□□□□ -0.26
TMEM260-213ENST00000556929 C1orf167Q5SNV9 1468 aa13.45□□□□□ -0.26
TMEM260-213ENST00000556929 AKAP12Q02952 1782 aa13.45□□□□□ -0.26
TMEM260-213ENST00000556929 TOM1O60784 492 aa13.43□□□□□ -0.26
TMEM260-213ENST00000556929 ESCO1Q5FWF5 840 aa13.43□□□□□ -0.26
TMEM260-213ENST00000556929 CABP1Q9NZU7 370 aa13.43□□□□□ -0.26
TMEM260-213ENST00000556929 SLAIN2Q9P270 581 aa13.43□□□□□ -0.26
TMEM260-213ENST00000556929 HDGFL2Q7Z4V5 671 aaPredicted RBP13.42□□□□□ -0.26
TMEM260-213ENST00000556929 TERF2IPQ9NYB0 399 aa13.42□□□□□ -0.26
TMEM260-213ENST00000556929 PHF8Q9UPP1 1060 aa13.42□□□□□ -0.26
TMEM260-213ENST00000556929 MON2Q7Z3U7 1717 aa13.42□□□□□ -0.26
TMEM260-213ENST00000556929 PLEKHG3A1L390 1219 aa13.41□□□□□ -0.26
TMEM260-213ENST00000556929 SLC12A5Q9H2X9 1139 aa13.41□□□□□ -0.26
TMEM260-213ENST00000556929 NGDNQ8NEJ9 315 aaKnown RBP13.4□□□□□ -0.26
TMEM260-213ENST00000556929 PMFBP1Q8TBY8 1022 aa13.4□□□□□ -0.26
TMEM260-213ENST00000556929 ORAI2Q96SN7 254 aa13.4□□□□□ -0.26
TMEM260-213ENST00000556929 ZNF692Q9BU19 519 aaPredicted RBP13.4□□□□□ -0.26
TMEM260-213ENST00000556929 ROBO1Q9Y6N7 1651 aa13.4□□□□□ -0.26
TMEM260-213ENST00000556929 UBAP1LF5GYI3 381 aa13.39□□□□□ -0.27
TMEM260-213ENST00000556929 DDX10Q13206 875 aaKnown RBP13.39□□□□□ -0.27
TMEM260-213ENST00000556929 ANKRD36BQ8N2N9 1353 aa13.39□□□□□ -0.27
TMEM260-213ENST00000556929 ACEP12821 1306 aa13.39□□□□□ -0.27
TMEM260-213ENST00000556929 POLR3AO14802 1390 aaPredicted RBP13.38□□□□□ -0.27
TMEM260-213ENST00000556929 PANK3Q9H999 370 aa13.38□□□□□ -0.27
TMEM260-213ENST00000556929 NHSL1Q5SYE7 1610 aa13.38□□□□□ -0.27
TMEM260-213ENST00000556929 CPSF1Q10570 1443 aaKnown RBP13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms