RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 LAPTM4AQ15012 233 aa12.39□□□□□ -0.43
PRPF39-209ENST00000556353 PLA2G2CQ5R387 149 aa12.39□□□□□ -0.43
PRPF39-209ENST00000556353 SPRYD7Q5W111 196 aa12.39□□□□□ -0.43
PRPF39-209ENST00000556353 DIXDC1Q155Q3 683 aa12.38□□□□□ -0.43
PRPF39-209ENST00000556353 MOXD2PA6NHM9 499 aa12.37□□□□□ -0.43
PRPF39-209ENST00000556353 GFRA3O60609 400 aa12.37□□□□□ -0.43
PRPF39-209ENST00000556353 NDUFV2P19404 249 aa12.36□□□□□ -0.43
PRPF39-209ENST00000556353 MMP16P51512 607 aa12.36□□□□□ -0.43
PRPF39-209ENST00000556353 ZNF598Q86UK7 904 aaKnown RBP12.36□□□□□ -0.43
PRPF39-209ENST00000556353 TBC1D2Q9BYX2 928 aa12.36□□□□□ -0.43
PRPF39-209ENST00000556353 PCDHGC3Q9UN70 934 aa12.36□□□□□ -0.43
PRPF39-209ENST00000556353 SYMPKQ92797 1274 aaKnown RBP12.35□□□□□ -0.43
PRPF39-209ENST00000556353 C6orf229H3BNL8 230 aa12.34□□□□□ -0.43
PRPF39-209ENST00000556353 DXOO77932 396 aaKnown RBP12.34□□□□□ -0.43
PRPF39-209ENST00000556353 RETREG3Q86VR2 466 aa12.34□□□□□ -0.43
PRPF39-209ENST00000556353 PDZRN3Q9UPQ7 1066 aa12.34□□□□□ -0.43
PRPF39-209ENST00000556353 ZNF697Q5TEC3 545 aa12.33□□□□□ -0.44
PRPF39-209ENST00000556353 NRG2O14511 850 aaPredicted RBP12.32□□□□□ -0.44
PRPF39-209ENST00000556353 RPIAP49247 311 aa12.32□□□□□ -0.44
PRPF39-209ENST00000556353 Q6ZNB5 142 aa12.32□□□□□ -0.44
PRPF39-209ENST00000556353 ZBTB24O43167 697 aaPredicted RBP12.3□□□□□ -0.44
PRPF39-209ENST00000556353 GJA5P36382 358 aa12.3□□□□□ -0.44
PRPF39-209ENST00000556353 CD2BP2O95400 341 aaKnown RBP12.29□□□□□ -0.44
PRPF39-209ENST00000556353 JUNDP17535 347 aa12.29□□□□□ -0.44
PRPF39-209ENST00000556353 RSBN1LQ6PCB5 846 aaPredicted RBP12.29□□□□□ -0.44
PRPF39-209ENST00000556353 SPDYE5A6NIY4 337 aa12.27□□□□□ -0.45
PRPF39-209ENST00000556353 SPTLC1O15269 473 aa12.27□□□□□ -0.45
PRPF39-209ENST00000556353 MTMR2Q13614 643 aa12.27□□□□□ -0.45
PRPF39-209ENST00000556353 TRIM67Q6ZTA4 783 aa12.27□□□□□ -0.45
PRPF39-209ENST00000556353 CCDC24Q8N4L8 307 aa12.27□□□□□ -0.45
PRPF39-209ENST00000556353 RIC3Q7Z5B4 369 aa12.26□□□□□ -0.45
PRPF39-209ENST00000556353 PRR20EP86478 221 aa12.25□□□□□ -0.45
PRPF39-209ENST00000556353 PRR20CP86479 221 aa12.25□□□□□ -0.45
PRPF39-209ENST00000556353 PRR20DP86480 221 aa12.25□□□□□ -0.45
PRPF39-209ENST00000556353 PRR20BP86481 221 aa12.25□□□□□ -0.45
PRPF39-209ENST00000556353 PRR20AP86496 221 aa12.25□□□□□ -0.45
PRPF39-209ENST00000556353 MYSM1Q5VVJ2 828 aa12.24□□□□□ -0.45
PRPF39-209ENST00000556353 PRR7Q8TB68 274 aa12.24□□□□□ -0.45
PRPF39-209ENST00000556353 PCDHB15Q9Y5E8 787 aa12.24□□□□□ -0.45
PRPF39-209ENST00000556353 TNFRSF10AO00220 468 aa12.23□□□□□ -0.45
PRPF39-209ENST00000556353 GDF9O60383 454 aa12.22□□□□□ -0.45
PRPF39-209ENST00000556353 FOXC1Q12948 553 aa12.22□□□□□ -0.45
PRPF39-209ENST00000556353 NUDT12Q9BQG2 462 aa12.22□□□□□ -0.45
PRPF39-209ENST00000556353 RSPH6AQ9H0K4 717 aa12.22□□□□□ -0.45
PRPF39-209ENST00000556353 KDM4CQ9H3R0 1056 aa12.22□□□□□ -0.45
PRPF39-209ENST00000556353 ZBTB3Q9H5J0 574 aa12.22□□□□□ -0.45
PRPF39-209ENST00000556353 GPBP1L1Q9HC44 474 aaPredicted RBP12.22□□□□□ -0.45
PRPF39-209ENST00000556353 TRIM32Q13049 653 aa12.21□□□□□ -0.45
PRPF39-209ENST00000556353 CSPP1Q1MSJ5 1256 aa12.2□□□□□ -0.46
PRPF39-209ENST00000556353 PRPF38BQ5VTL8 546 aaKnown RBP12.2□□□□□ -0.46
PRPF39-209ENST00000556353 HRCP23327 699 aa12.19□□□□□ -0.46
PRPF39-209ENST00000556353 DESI1Q6ICB0 168 aa12.19□□□□□ -0.46
PRPF39-209ENST00000556353 PKD2L1Q9P0L9 805 aa12.19□□□□□ -0.46
PRPF39-209ENST00000556353 LIMD1Q9UGP4 676 aa12.19□□□□□ -0.46
PRPF39-209ENST00000556353 CCNYL3P0C7X3 344 aa12.18□□□□□ -0.46
PRPF39-209ENST00000556353 PTPRNQ16849 979 aa12.18□□□□□ -0.46
PRPF39-209ENST00000556353 TUSC1Q2TAM9 212 aa12.17□□□□□ -0.46
PRPF39-209ENST00000556353 TRAF7Q6Q0C0 670 aa12.17□□□□□ -0.46
PRPF39-209ENST00000556353 CABLES1Q8TDN4 633 aa12.17□□□□□ -0.46
PRPF39-209ENST00000556353 CLK2P49760 499 aaKnown RBP12.16□□□□□ -0.46
PRPF39-209ENST00000556353 DDRGK1Q96HY6 314 aa12.16□□□□□ -0.46
PRPF39-209ENST00000556353 NUTM2BA6NNL0 878 aaPredicted RBP12.15□□□□□ -0.46
PRPF39-209ENST00000556353 NUTM2EB1AL46 878 aaPredicted RBP12.15□□□□□ -0.46
PRPF39-209ENST00000556353 CFAP99D6REC4 459 aa12.15□□□□□ -0.46
PRPF39-209ENST00000556353 PKDCCQ504Y2 493 aa12.15□□□□□ -0.46
PRPF39-209ENST00000556353 NUTM2DQ5VT03 806 aaPredicted RBP12.15□□□□□ -0.46
PRPF39-209ENST00000556353 NUTM2AQ8IVF1 878 aaPredicted RBP12.15□□□□□ -0.46
PRPF39-209ENST00000556353 FAM117AQ9C073 453 aa12.14□□□□□ -0.47
PRPF39-209ENST00000556353 POLR3EQ9NVU0 708 aa12.14□□□□□ -0.47
PRPF39-209ENST00000556353 WNT7AO00755 349 aa12.13□□□□□ -0.47
PRPF39-209ENST00000556353 QPCTQ16769 361 aa12.13□□□□□ -0.47
PRPF39-209ENST00000556353 EVA1BQ9NVM1 165 aa12.13□□□□□ -0.47
PRPF39-209ENST00000556353 FAM187AA6NFU0 413 aa12.12□□□□□ -0.47
PRPF39-209ENST00000556353 DGAT1O75907 488 aa12.12□□□□□ -0.47
PRPF39-209ENST00000556353 PTCRAQ6ISU1 281 aaPredicted RBP12.12□□□□□ -0.47
PRPF39-209ENST00000556353 CYP4X1Q8N118 509 aa12.12□□□□□ -0.47
PRPF39-209ENST00000556353 LCE2BO14633 110 aa12.11□□□□□ -0.47
PRPF39-209ENST00000556353 LILRB3O75022 631 aa12.11□□□□□ -0.47
PRPF39-209ENST00000556353 WNT7BP56706 349 aa12.11□□□□□ -0.47
PRPF39-209ENST00000556353 LYPD8Q6UX82 237 aa12.11□□□□□ -0.47
PRPF39-209ENST00000556353 KCNH2Q12809 1159 aa12.1□□□□□ -0.47
PRPF39-209ENST00000556353 TSC1Q92574 1164 aa12.1□□□□□ -0.47
PRPF39-209ENST00000556353 SKIV2LQ15477 1246 aaKnown RBP12.09□□□□□ -0.47
PRPF39-209ENST00000556353 TPRNQ4KMQ1 711 aa12.09□□□□□ -0.47
PRPF39-209ENST00000556353 TOR4AQ9NXH8 423 aa12.09□□□□□ -0.47
PRPF39-209ENST00000556353 SKOR1P84550 965 aa12.08□□□□□ -0.48
PRPF39-209ENST00000556353 NEUROD2Q15784 382 aa12.08□□□□□ -0.48
PRPF39-209ENST00000556353 SH3D19Q5HYK7 790 aa12.08□□□□□ -0.48
PRPF39-209ENST00000556353 RC3H1Q5TC82 1133 aaKnown RBP12.08□□□□□ -0.48
PRPF39-209ENST00000556353 UNC93B1Q9H1C4 597 aa12.08□□□□□ -0.48
PRPF39-209ENST00000556353 TTC24A2A3L6 582 aaPredicted RBP12.07□□□□□ -0.48
PRPF39-209ENST00000556353 CTHP32929 405 aa12.07□□□□□ -0.48
PRPF39-209ENST00000556353 MRGPRX2Q96LB1 330 aa12.07□□□□□ -0.48
PRPF39-209ENST00000556353 ATP1B4Q9UN42 357 aaPredicted RBP12.07□□□□□ -0.48
PRPF39-209ENST00000556353 PLEKHG3A1L390 1219 aa12.06□□□□□ -0.48
PRPF39-209ENST00000556353 RTL5Q5HYW3 569 aaPredicted RBP12.06□□□□□ -0.48
PRPF39-209ENST00000556353 HELBQ8NG08 1087 aaPredicted RBP12.06□□□□□ -0.48
PRPF39-209ENST00000556353 SNIP1Q8TAD8 396 aaKnown RBP12.05□□□□□ -0.48
PRPF39-209ENST00000556353 MYT1Q01538 1121 aa12.04□□□□□ -0.48
PRPF39-209ENST00000556353 PER1O15534 1290 aaPredicted RBP12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms