RNA–Protein interactions for RNA: ENST00000556083.1

ACTN1-216, Transcript of actinin alpha 1, humanhuman

TSL 1 (best)

Gene ACTN1, Length 4,674 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-216ENST00000556083 FAM69CQ0P6D2 419 aa12.96□□□□□ -0.33
ACTN1-216ENST00000556083 IL27Q8NEV9 243 aa12.96□□□□□ -0.33
ACTN1-216ENST00000556083 RSPH6AQ9H0K4 717 aa12.96□□□□□ -0.33
ACTN1-216ENST00000556083 TBC1D2BQ9UPU7 963 aa12.96□□□□□ -0.33
ACTN1-216ENST00000556083 SMC3Q9UQE7 1217 aa12.96□□□□□ -0.33
ACTN1-216ENST00000556083 DAPK1P53355 1430 aa12.96□□□□□ -0.33
ACTN1-216ENST00000556083 CYB5RLQ6IPT4 315 aa12.96□□□□□ -0.34
ACTN1-216ENST00000556083 FANCIQ9NVI1 1328 aa12.96□□□□□ -0.34
ACTN1-216ENST00000556083 GZF1Q9H116 711 aaPredicted RBP12.95□□□□□ -0.34
ACTN1-216ENST00000556083 DCAF8L1A6NGE4 600 aa12.95□□□□□ -0.34
ACTN1-216ENST00000556083 CDC45O75419 566 aa12.95□□□□□ -0.34
ACTN1-216ENST00000556083 ANO2Q9NQ90 1003 aa12.95□□□□□ -0.34
ACTN1-216ENST00000556083 CLASRPQ8N2M8 674 aaKnown RBP12.95□□□□□ -0.34
ACTN1-216ENST00000556083 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.95□□□□□ -0.34
ACTN1-216ENST00000556083 CCP110O43303 1012 aa12.95□□□□□ -0.34
ACTN1-216ENST00000556083 UBTFL1P0CB47 393 aaPredicted RBP12.95□□□□□ -0.34
ACTN1-216ENST00000556083 CNTROBQ8N137 903 aa12.95□□□□□ -0.34
ACTN1-216ENST00000556083 ANKRD30BQ9BXX2 1392 aa12.95□□□□□ -0.34
ACTN1-216ENST00000556083 PES1O00541 588 aaKnown RBP12.94□□□□□ -0.34
ACTN1-216ENST00000556083 APPP05067 770 aa12.94□□□□□ -0.34
ACTN1-216ENST00000556083 MYO6Q9UM54 1294 aa12.94□□□□□ -0.34
ACTN1-216ENST00000556083 MBD3O95983 291 aa12.94□□□□□ -0.34
ACTN1-216ENST00000556083 PDE3AQ14432 1141 aa12.94□□□□□ -0.34
ACTN1-216ENST00000556083 GCC1Q96CN9 775 aa12.94□□□□□ -0.34
ACTN1-216ENST00000556083 TXLNBQ8N3L3 684 aa12.94□□□□□ -0.34
ACTN1-216ENST00000556083 CCDC173Q0VFZ6 552 aa12.93□□□□□ -0.34
ACTN1-216ENST00000556083 MEX3CQ5U5Q3 659 aaKnown RBP12.93□□□□□ -0.34
ACTN1-216ENST00000556083 SASS6Q6UVJ0 657 aa12.93□□□□□ -0.34
ACTN1-216ENST00000556083 RIC3Q7Z5B4 369 aa12.93□□□□□ -0.34
ACTN1-216ENST00000556083 EHBP1L1Q8N3D4 1523 aa12.93□□□□□ -0.34
ACTN1-216ENST00000556083 MCTP1Q6DN14 999 aa12.93□□□□□ -0.34
ACTN1-216ENST00000556083 PRM3Q9NNZ6 103 aa12.93□□□□□ -0.34
ACTN1-216ENST00000556083 GNL3LQ9NVN8 582 aaKnown RBP12.93□□□□□ -0.34
ACTN1-216ENST00000556083 ARGLU1Q9NWB6 273 aaPredicted RBP12.93□□□□□ -0.34
ACTN1-216ENST00000556083 R3HCC1Q9Y3T6 440 aaKnown RBP12.93□□□□□ -0.34
ACTN1-216ENST00000556083 TEX35Q5T0J7 233 aa12.93□□□□□ -0.34
ACTN1-216ENST00000556083 NFXL1Q6ZNB6 911 aa12.93□□□□□ -0.34
ACTN1-216ENST00000556083 EIF2S2P20042 333 aaKnown RBP12.92□□□□□ -0.34
ACTN1-216ENST00000556083 MTERF4Q7Z6M4 381 aaKnown RBP12.92□□□□□ -0.34
ACTN1-216ENST00000556083 COG6Q9Y2V7 657 aa12.92□□□□□ -0.34
ACTN1-216ENST00000556083 NCOA2Q15596 1464 aa12.92□□□□□ -0.34
ACTN1-216ENST00000556083 ATAD2Q6PL18 1390 aa12.92□□□□□ -0.34
ACTN1-216ENST00000556083 ARHGAP5Q13017 1502 aa12.92□□□□□ -0.34
ACTN1-216ENST00000556083 BICD2Q8TD16 824 aa12.92□□□□□ -0.34
ACTN1-216ENST00000556083 RRP7AQ9Y3A4 280 aaKnown RBP12.91□□□□□ -0.34
ACTN1-216ENST00000556083 CREBRFQ8IUR6 639 aa12.91□□□□□ -0.34
ACTN1-216ENST00000556083 JMYQ8N9B5 988 aa12.91□□□□□ -0.34
ACTN1-216ENST00000556083 NUTM2DQ5VT03 806 aaPredicted RBP12.91□□□□□ -0.34
ACTN1-216ENST00000556083 GSE1Q14687 1217 aa12.91□□□□□ -0.34
ACTN1-216ENST00000556083 ANKRD1Q15327 319 aa12.91□□□□□ -0.34
ACTN1-216ENST00000556083 ERCC4Q92889 916 aaPredicted RBP12.9□□□□□ -0.34
ACTN1-216ENST00000556083 CRBNQ96SW2 442 aa12.9□□□□□ -0.34
ACTN1-216ENST00000556083 SRCIN1Q9C0H9 1055 aa12.9□□□□□ -0.34
ACTN1-216ENST00000556083 MRC2Q9UBG0 1479 aa12.9□□□□□ -0.34
ACTN1-216ENST00000556083 ZSCAN25Q6NSZ9 544 aa12.9□□□□□ -0.34
ACTN1-216ENST00000556083 OLFM4Q6UX06 510 aa12.9□□□□□ -0.34
ACTN1-216ENST00000556083 CCT4P50991 539 aaKnown RBP12.89□□□□□ -0.35
ACTN1-216ENST00000556083 KIF6Q6ZMV9 814 aa12.89□□□□□ -0.35
ACTN1-216ENST00000556083 CFTRP13569 1480 aa12.89□□□□□ -0.35
ACTN1-216ENST00000556083 TXLNAP40222 546 aa12.89□□□□□ -0.35
ACTN1-216ENST00000556083 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.89□□□□□ -0.35
ACTN1-216ENST00000556083 NLRP6P59044 892 aa12.89□□□□□ -0.35
ACTN1-216ENST00000556083 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.89□□□□□ -0.35
ACTN1-216ENST00000556083 ELL2O00472 640 aaPredicted RBP12.89□□□□□ -0.35
ACTN1-216ENST00000556083 MSH5O43196 834 aa12.89□□□□□ -0.35
ACTN1-216ENST00000556083 AK7Q96M32 723 aa12.89□□□□□ -0.35
ACTN1-216ENST00000556083 PCMTD1Q96MG8 357 aaPredicted RBP12.89□□□□□ -0.35
ACTN1-216ENST00000556083 NUTM2FA1L443 756 aa12.88□□□□□ -0.35
ACTN1-216ENST00000556083 TATP17735 454 aaPredicted RBP12.88□□□□□ -0.35
ACTN1-216ENST00000556083 WDR63Q8IWG1 891 aa12.88□□□□□ -0.35
ACTN1-216ENST00000556083 CWC22Q9HCG8 908 aaKnown RBP12.88□□□□□ -0.35
ACTN1-216ENST00000556083 TROQ12816 1431 aaPredicted RBP12.88□□□□□ -0.35
ACTN1-216ENST00000556083 NLRP2Q9NX02 1062 aa12.88□□□□□ -0.35
ACTN1-216ENST00000556083 LUC7LQ9NQ29 371 aaKnown RBP12.88□□□□□ -0.35
ACTN1-216ENST00000556083 RABEP1Q15276 862 aa12.88□□□□□ -0.35
ACTN1-216ENST00000556083 NOL8Q76FK4 1167 aaKnown RBP12.88□□□□□ -0.35
ACTN1-216ENST00000556083 TSHZ2Q9NRE2 1034 aa12.88□□□□□ -0.35
ACTN1-216ENST00000556083 KIAA1107Q9UPP5 1409 aa12.87□□□□□ -0.35
ACTN1-216ENST00000556083 ZNF396Q96N95 335 aaPredicted RBP12.87□□□□□ -0.35
ACTN1-216ENST00000556083 HMGXB3Q12766 1538 aa12.87□□□□□ -0.35
ACTN1-216ENST00000556083 SPG7Q9UQ90 795 aa12.86□□□□□ -0.35
ACTN1-216ENST00000556083 WWC2Q6AWC2 1192 aa12.86□□□□□ -0.35
ACTN1-216ENST00000556083 EXOC6Q8TAG9 804 aa12.86□□□□□ -0.35
ACTN1-216ENST00000556083 MAP7D2Q96T17 732 aa12.86□□□□□ -0.35
ACTN1-216ENST00000556083 NACAP1Q9BZK3 213 aa12.86□□□□□ -0.35
ACTN1-216ENST00000556083 AEBP1Q8IUX7 1158 aa12.86□□□□□ -0.35
ACTN1-216ENST00000556083 C22orf23Q9BZE7 217 aa12.86□□□□□ -0.35
ACTN1-216ENST00000556083 PPP6R1Q9UPN7 881 aa12.86□□□□□ -0.35
ACTN1-216ENST00000556083 NCBP3Q53F19 620 aaKnown RBP12.85□□□□□ -0.35
ACTN1-216ENST00000556083 RTN4Q9NQC3 1192 aaKnown RBP12.85□□□□□ -0.35
ACTN1-216ENST00000556083 FILIP1LQ4L180 1135 aa12.85□□□□□ -0.35
ACTN1-216ENST00000556083 DACH1Q9UI36 760 aa12.85□□□□□ -0.35
ACTN1-216ENST00000556083 ODF2Q5BJF6 829 aa12.85□□□□□ -0.35
ACTN1-216ENST00000556083 CCDC158Q5M9N0 1113 aa12.85□□□□□ -0.35
ACTN1-216ENST00000556083 SMARCE1Q969G3 411 aa12.85□□□□□ -0.35
ACTN1-216ENST00000556083 RUFY1Q96T51 708 aa12.85□□□□□ -0.35
ACTN1-216ENST00000556083 HECW1Q76N89 1606 aa12.84□□□□□ -0.35
ACTN1-216ENST00000556083 TXNDC2Q86VQ3 553 aa12.84□□□□□ -0.35
ACTN1-216ENST00000556083 GNAI2P04899 355 aa12.84□□□□□ -0.35
ACTN1-216ENST00000556083 OFD1O75665 1012 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms