RNA–Protein interactions for RNA: ENST00000556079.1

TMEM260-209, Transcript of transmembrane protein 260, humanhuman

TSL 2

Gene TMEM260, Length 596 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-209ENST00000556079 HDGFP51858 240 aaKnown RBP9.48□□□□□ -0.89
TMEM260-209ENST00000556079 COL16A1Q07092 1604 aaPredicted RBP9.47□□□□□ -0.89
TMEM260-209ENST00000556079 MEX3CQ5U5Q3 659 aaKnown RBP9.46□□□□□ -0.9
TMEM260-209ENST00000556079 TMEM132EQ6IEE7 984 aa9.46□□□□□ -0.9
TMEM260-209ENST00000556079 DDX17Q92841 729 aaKnown RBP9.46□□□□□ -0.9
TMEM260-209ENST00000556079 PIK3R4Q99570 1358 aa9.46□□□□□ -0.9
TMEM260-209ENST00000556079 ANKRD30BQ9BXX2 1392 aa9.46□□□□□ -0.9
TMEM260-209ENST00000556079 UPF1Q92900 1129 aaKnown RBP eCLIP9.45□□□□□ -0.9
TMEM260-209ENST00000556079 STK26Q9P289 416 aa9.45□□□□□ -0.9
TMEM260-209ENST00000556079 PLEKHH1Q9ULM0 1364 aa9.45□□□□□ -0.9
TMEM260-209ENST00000556079 NUTM2BA6NNL0 878 aaPredicted RBP9.44□□□□□ -0.9
TMEM260-209ENST00000556079 NUTM2EB1AL46 878 aaPredicted RBP9.44□□□□□ -0.9
TMEM260-209ENST00000556079 ATF3P18847 181 aa9.44□□□□□ -0.9
TMEM260-209ENST00000556079 NUTM2AQ8IVF1 878 aaPredicted RBP9.44□□□□□ -0.9
TMEM260-209ENST00000556079 C19orf44Q9H6X5 657 aa9.44□□□□□ -0.9
TMEM260-209ENST00000556079 SPATA31A6Q5VVP1 1343 aa9.44□□□□□ -0.9
TMEM260-209ENST00000556079 PIK3C2GO75747 1445 aa9.44□□□□□ -0.9
TMEM260-209ENST00000556079 MST1RQ04912 1400 aa9.44□□□□□ -0.9
TMEM260-209ENST00000556079 ADGRL3Q9HAR2 1447 aa9.44□□□□□ -0.9
TMEM260-209ENST00000556079 RPGRIP1LQ68CZ1 1315 aa9.43□□□□□ -0.9
TMEM260-209ENST00000556079 VGFO15240 615 aaPredicted RBP9.43□□□□□ -0.9
TMEM260-209ENST00000556079 ZNF772Q68DY9 489 aaPredicted RBP9.43□□□□□ -0.9
TMEM260-209ENST00000556079 CHRDL2Q6WN34 429 aa9.43□□□□□ -0.9
TMEM260-209ENST00000556079 BRINP3Q76B58 766 aa9.43□□□□□ -0.9
TMEM260-209ENST00000556079 WAPLQ7Z5K2 1190 aa9.43□□□□□ -0.9
TMEM260-209ENST00000556079 CADPS2Q86UW7 1296 aa9.43□□□□□ -0.9
TMEM260-209ENST00000556079 NRXN1Q9ULB1 1477 aa9.42□□□□□ -0.9
TMEM260-209ENST00000556079 PTCH1Q13635 1447 aa9.42□□□□□ -0.9
TMEM260-209ENST00000556079 NCOA3Q9Y6Q9 1424 aa9.42□□□□□ -0.9
TMEM260-209ENST00000556079 CFAP70Q5T0N1 1121 aa9.42□□□□□ -0.9
TMEM260-209ENST00000556079 REM2Q8IYK8 340 aaPredicted RBP9.42□□□□□ -0.9
TMEM260-209ENST00000556079 KNDC1Q76NI1 1749 aa9.42□□□□□ -0.9
TMEM260-209ENST00000556079 AHDC1Q5TGY3 1603 aaPredicted RBP9.42□□□□□ -0.9
TMEM260-209ENST00000556079 DHX57Q6P158 1386 aaKnown RBP9.41□□□□□ -0.9
TMEM260-209ENST00000556079 SPDYE2BA6NHP3 402 aa9.41□□□□□ -0.9
TMEM260-209ENST00000556079 SPDYE6P0CI01 402 aa9.41□□□□□ -0.9
TMEM260-209ENST00000556079 SPDYE2Q495Y8 402 aa9.41□□□□□ -0.9
TMEM260-209ENST00000556079 KDM2AQ9Y2K7 1162 aa9.41□□□□□ -0.9
TMEM260-209ENST00000556079 NHSL1Q5SYE7 1610 aa9.41□□□□□ -0.9
TMEM260-209ENST00000556079 MYOM2P54296 1465 aa9.4□□□□□ -0.9
TMEM260-209ENST00000556079 RGPD8O14715 1765 aaPredicted RBP9.4□□□□□ -0.9
TMEM260-209ENST00000556079 NUTM2FA1L443 756 aa9.4□□□□□ -0.9
TMEM260-209ENST00000556079 RXRBP28702 533 aa9.4□□□□□ -0.9
TMEM260-209ENST00000556079 YTHDC2Q9H6S0 1430 aaKnown RBP9.39□□□□□ -0.91
TMEM260-209ENST00000556079 LRPPRCP42704 1394 aaKnown RBP9.39□□□□□ -0.91
TMEM260-209ENST00000556079 SHPRHQ149N8 1683 aa9.39□□□□□ -0.91
TMEM260-209ENST00000556079 AFF2P51816 1311 aa9.39□□□□□ -0.91
TMEM260-209ENST00000556079 SAFB2Q14151 953 aaKnown RBP eCLIP9.39□□□□□ -0.91
TMEM260-209ENST00000556079 ORAI2Q96SN7 254 aa9.39□□□□□ -0.91
TMEM260-209ENST00000556079 ZNF692Q9BU19 519 aaPredicted RBP9.39□□□□□ -0.91
TMEM260-209ENST00000556079 C1orf167Q5SNV9 1468 aa9.39□□□□□ -0.91
TMEM260-209ENST00000556079 ADGRB1O14514 1584 aa9.38□□□□□ -0.91
TMEM260-209ENST00000556079 DCAF11Q8TEB1 546 aa9.38□□□□□ -0.91
TMEM260-209ENST00000556079 FMN2Q9NZ56 1722 aa9.38□□□□□ -0.91
TMEM260-209ENST00000556079 TECPR2O15040 1411 aa9.38□□□□□ -0.91
TMEM260-209ENST00000556079 DCCP43146 1447 aa9.38□□□□□ -0.91
TMEM260-209ENST00000556079 PRAG1Q86YV5 1406 aa9.38□□□□□ -0.91
TMEM260-209ENST00000556079 CDC42BPGQ6DT37 1551 aa9.37□□□□□ -0.91
TMEM260-209ENST00000556079 EP400Q96L91 3159 aa9.37□□□□□ -0.91
TMEM260-209ENST00000556079 C8orf37Q96NL8 207 aa9.37□□□□□ -0.91
TMEM260-209ENST00000556079 SIN3AQ96ST3 1273 aa9.37□□□□□ -0.91
TMEM260-209ENST00000556079 LAMC1P11047 1609 aa9.37□□□□□ -0.91
TMEM260-209ENST00000556079 XPCQ01831 940 aaPredicted RBP9.36□□□□□ -0.91
TMEM260-209ENST00000556079 C14orf93Q9H972 538 aaKnown RBP9.36□□□□□ -0.91
TMEM260-209ENST00000556079 USP32Q8NFA0 1604 aa9.35□□□□□ -0.91
TMEM260-209ENST00000556079 RGS12O14924 1447 aa9.35□□□□□ -0.91
TMEM260-209ENST00000556079 ADAMTS2O95450 1211 aa9.35□□□□□ -0.91
TMEM260-209ENST00000556079 ARHGEF28Q8N1W1 1705 aaKnown RBP9.35□□□□□ -0.91
TMEM260-209ENST00000556079 QTRT2Q9H974 415 aaKnown RBP9.35□□□□□ -0.91
TMEM260-209ENST00000556079 ABCC11Q96J66 1382 aa9.35□□□□□ -0.91
TMEM260-209ENST00000556079 PITPNM1O00562 1244 aa9.34□□□□□ -0.91
TMEM260-209ENST00000556079 HRCP23327 699 aa9.34□□□□□ -0.91
TMEM260-209ENST00000556079 LRRC59Q96AG4 307 aaKnown RBP9.34□□□□□ -0.91
TMEM260-209ENST00000556079 PRAM1Q96QH2 718 aa9.34□□□□□ -0.91
TMEM260-209ENST00000556079 HIRIP3Q9BW71 556 aaPredicted RBP9.34□□□□□ -0.91
TMEM260-209ENST00000556079 TRAK1Q9UPV9 953 aa9.34□□□□□ -0.91
TMEM260-209ENST00000556079 PNPLA6Q8IY17 1366 aa9.34□□□□□ -0.91
TMEM260-209ENST00000556079 CDK12Q9NYV4 1490 aaPredicted RBP9.34□□□□□ -0.91
TMEM260-209ENST00000556079 RBM6P78332 1123 aaKnown RBP9.33□□□□□ -0.92
TMEM260-209ENST00000556079 NBPF1Q3BBV0 1214 aa9.32□□□□□ -0.92
TMEM260-209ENST00000556079 NGLY1Q96IV0 654 aa9.32□□□□□ -0.92
TMEM260-209ENST00000556079 PXDNQ92626 1479 aa9.32□□□□□ -0.92
TMEM260-209ENST00000556079 MINK1Q8N4C8 1332 aaPredicted RBP9.31□□□□□ -0.92
TMEM260-209ENST00000556079 PLEKHG5O94827 1062 aa9.31□□□□□ -0.92
TMEM260-209ENST00000556079 NEUROD1Q13562 356 aa9.31□□□□□ -0.92
TMEM260-209ENST00000556079 ESCO1Q5FWF5 840 aa9.31□□□□□ -0.92
TMEM260-209ENST00000556079 DLC1Q96QB1 1528 aa9.31□□□□□ -0.92
TMEM260-209ENST00000556079 PRR36Q9H6K5 1346 aa9.3□□□□□ -0.92
TMEM260-209ENST00000556079 ADGRB2O60241 1585 aa9.29□□□□□ -0.92
TMEM260-209ENST00000556079 FOXO3O43524 673 aa9.29□□□□□ -0.92
TMEM260-209ENST00000556079 L3MBTL2Q969R5 705 aa9.29□□□□□ -0.92
TMEM260-209ENST00000556079 USP21Q9UK80 565 aa9.29□□□□□ -0.92
TMEM260-209ENST00000556079 CLEC11AQ9Y240 323 aa9.29□□□□□ -0.92
TMEM260-209ENST00000556079 SSUH2Q9Y2M2 353 aa9.29□□□□□ -0.92
TMEM260-209ENST00000556079 SOS2Q07890 1332 aaPredicted RBP9.29□□□□□ -0.92
TMEM260-209ENST00000556079 ACIN1Q9UKV3 1341 aaKnown RBP9.29□□□□□ -0.92
TMEM260-209ENST00000556079 POGKQ9P215 609 aa9.28□□□□□ -0.92
TMEM260-209ENST00000556079 KIAA1210Q9ULL0 1709 aa9.28□□□□□ -0.92
TMEM260-209ENST00000556079 TRPM1Q7Z4N2 1603 aa9.27□□□□□ -0.92
TMEM260-209ENST00000556079 COL22A1Q8NFW1 1626 aaPredicted RBP9.27□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms