RNA–Protein interactions for RNA: ENST00000556013.2

PTCSC3-201, Transcript of papillary thyroid carcinoma susceptibility candidate 3, humanhuman

TSL 1 (best) BASIC

Gene PTCSC3, Length 571 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCSC3-201ENST00000556013 SETD1AO15047 1707 aaKnown RBP11.5□□□□□ -0.57
PTCSC3-201ENST00000556013 ESCO1Q5FWF5 840 aa11.5□□□□□ -0.57
PTCSC3-201ENST00000556013 DDX17Q92841 729 aaKnown RBP11.5□□□□□ -0.57
PTCSC3-201ENST00000556013 CDK12Q9NYV4 1490 aaPredicted RBP11.5□□□□□ -0.57
PTCSC3-201ENST00000556013 LAMC1P11047 1609 aa11.49□□□□□ -0.57
PTCSC3-201ENST00000556013 RBM6P78332 1123 aaKnown RBP11.49□□□□□ -0.57
PTCSC3-201ENST00000556013 WAPLQ7Z5K2 1190 aa11.49□□□□□ -0.57
PTCSC3-201ENST00000556013 AFF2P51816 1311 aa11.49□□□□□ -0.57
PTCSC3-201ENST00000556013 PIK3C2GO75747 1445 aa11.49□□□□□ -0.57
PTCSC3-201ENST00000556013 TMEM132EQ6IEE7 984 aa11.48□□□□□ -0.57
PTCSC3-201ENST00000556013 FNBP4Q8N3X1 1017 aaPredicted RBP11.48□□□□□ -0.57
PTCSC3-201ENST00000556013 NGLY1Q96IV0 654 aa11.48□□□□□ -0.57
PTCSC3-201ENST00000556013 QTRT2Q9H974 415 aaKnown RBP11.48□□□□□ -0.57
PTCSC3-201ENST00000556013 STK26Q9P289 416 aa11.48□□□□□ -0.57
PTCSC3-201ENST00000556013 DHX57Q6P158 1386 aaKnown RBP11.48□□□□□ -0.57
PTCSC3-201ENST00000556013 NALCNQ8IZF0 1738 aa11.47□□□□□ -0.57
PTCSC3-201ENST00000556013 YTHDC2Q9H6S0 1430 aaKnown RBP11.46□□□□□ -0.57
PTCSC3-201ENST00000556013 RAB3GAP2Q9H2M9 1393 aa11.46□□□□□ -0.57
PTCSC3-201ENST00000556013 FOXO3O43524 673 aa11.46□□□□□ -0.57
PTCSC3-201ENST00000556013 UPF1Q92900 1129 aaKnown RBP eCLIP11.46□□□□□ -0.57
PTCSC3-201ENST00000556013 C8orf37Q96NL8 207 aa11.46□□□□□ -0.57
PTCSC3-201ENST00000556013 NRXN1Q9ULB1 1477 aa11.45□□□□□ -0.58
PTCSC3-201ENST00000556013 CFAP70Q5T0N1 1121 aa11.45□□□□□ -0.58
PTCSC3-201ENST00000556013 TRPC5Q9UL62 973 aaPredicted RBP11.45□□□□□ -0.58
PTCSC3-201ENST00000556013 CDC42BPGQ6DT37 1551 aa11.45□□□□□ -0.58
PTCSC3-201ENST00000556013 MYOM2P54296 1465 aa11.44□□□□□ -0.58
PTCSC3-201ENST00000556013 ADAMTS2O95450 1211 aa11.43□□□□□ -0.58
PTCSC3-201ENST00000556013 PSME1Q06323 249 aa11.43□□□□□ -0.58
PTCSC3-201ENST00000556013 USP21Q9UK80 565 aa11.43□□□□□ -0.58
PTCSC3-201ENST00000556013 KRT28Q7Z3Y7 464 aa11.42□□□□□ -0.58
PTCSC3-201ENST00000556013 IFT172Q9UG01 1749 aa11.42□□□□□ -0.58
PTCSC3-201ENST00000556013 PLEKHH1Q9ULM0 1364 aa11.41□□□□□ -0.58
PTCSC3-201ENST00000556013 SPATA31A3Q5VYP0 1347 aa11.41□□□□□ -0.58
PTCSC3-201ENST00000556013 PHF8Q9UPP1 1060 aa11.41□□□□□ -0.58
PTCSC3-201ENST00000556013 KNDC1Q76NI1 1749 aa11.4□□□□□ -0.58
PTCSC3-201ENST00000556013 PXDNQ92626 1479 aa11.4□□□□□ -0.58
PTCSC3-201ENST00000556013 PRAM1Q96QH2 718 aa11.4□□□□□ -0.58
PTCSC3-201ENST00000556013 POGKQ9P215 609 aa11.4□□□□□ -0.58
PTCSC3-201ENST00000556013 COL22A1Q8NFW1 1626 aaPredicted RBP11.39□□□□□ -0.59
PTCSC3-201ENST00000556013 NUTM2FA1L443 756 aa11.39□□□□□ -0.59
PTCSC3-201ENST00000556013 DCAF11Q8TEB1 546 aa11.39□□□□□ -0.59
PTCSC3-201ENST00000556013 DLC1Q96QB1 1528 aa11.39□□□□□ -0.59
PTCSC3-201ENST00000556013 SBNO1A3KN83 1393 aa11.38□□□□□ -0.59
PTCSC3-201ENST00000556013 ATRNO75882 1429 aa11.37□□□□□ -0.59
PTCSC3-201ENST00000556013 ANKARQ7Z5J8 1434 aa11.37□□□□□ -0.59
PTCSC3-201ENST00000556013 CCDC125Q86Z20 511 aa11.37□□□□□ -0.59
PTCSC3-201ENST00000556013 UNC5CLQ8IV45 518 aa11.37□□□□□ -0.59
PTCSC3-201ENST00000556013 GJD4Q96KN9 370 aaPredicted RBP11.37□□□□□ -0.59
PTCSC3-201ENST00000556013 EIF3AQ14152 1382 aaKnown RBP11.37□□□□□ -0.59
PTCSC3-201ENST00000556013 XPCQ01831 940 aaPredicted RBP11.36□□□□□ -0.59
PTCSC3-201ENST00000556013 TRAK1Q9UPV9 953 aa11.36□□□□□ -0.59
PTCSC3-201ENST00000556013 KDM2AQ9Y2K7 1162 aa11.36□□□□□ -0.59
PTCSC3-201ENST00000556013 BCL9LQ86UU0 1499 aa11.36□□□□□ -0.59
PTCSC3-201ENST00000556013 WASLO00401 505 aaPredicted RBP11.35□□□□□ -0.59
PTCSC3-201ENST00000556013 ARHGEF10O15013 1369 aa11.35□□□□□ -0.59
PTCSC3-201ENST00000556013 FMN2Q9NZ56 1722 aa11.35□□□□□ -0.59
PTCSC3-201ENST00000556013 RGS12O14924 1447 aa11.35□□□□□ -0.59
PTCSC3-201ENST00000556013 KIF1AQ12756 1690 aa11.34□□□□□ -0.59
PTCSC3-201ENST00000556013 ADGRB1O14514 1584 aa11.34□□□□□ -0.59
PTCSC3-201ENST00000556013 ATAD2Q6PL18 1390 aa11.34□□□□□ -0.59
PTCSC3-201ENST00000556013 ONECUT3O60422 494 aaPredicted RBP11.34□□□□□ -0.59
PTCSC3-201ENST00000556013 SAFB2Q14151 953 aaKnown RBP eCLIP11.34□□□□□ -0.59
PTCSC3-201ENST00000556013 SLIT2O94813 1529 aa11.33□□□□□ -0.6
PTCSC3-201ENST00000556013 TNS3Q68CZ2 1445 aa11.33□□□□□ -0.6
PTCSC3-201ENST00000556013 GPRASP1Q5JY77 1395 aa11.32□□□□□ -0.6
PTCSC3-201ENST00000556013 HAP1P54257 671 aaPredicted RBP11.32□□□□□ -0.6
PTCSC3-201ENST00000556013 VPS72Q15906 364 aa11.32□□□□□ -0.6
PTCSC3-201ENST00000556013 PMFBP1Q8TBY8 1022 aa11.32□□□□□ -0.6
PTCSC3-201ENST00000556013 ADGRB2O60241 1585 aa11.3□□□□□ -0.6
PTCSC3-201ENST00000556013 MINK1Q8N4C8 1332 aaPredicted RBP11.3□□□□□ -0.6
PTCSC3-201ENST00000556013 LMOD2Q6P5Q4 547 aa11.29□□□□□ -0.6
PTCSC3-201ENST00000556013 NGDNQ8NEJ9 315 aaKnown RBP11.29□□□□□ -0.6
PTCSC3-201ENST00000556013 NUDT16Q96DE0 195 aaKnown RBP11.29□□□□□ -0.6
PTCSC3-201ENST00000556013 HIRIP3Q9BW71 556 aaPredicted RBP11.29□□□□□ -0.6
PTCSC3-201ENST00000556013 CCDC61Q9Y6R9 512 aa11.29□□□□□ -0.6
PTCSC3-201ENST00000556013 PRR36Q9H6K5 1346 aa11.29□□□□□ -0.6
PTCSC3-201ENST00000556013 PLEKHG3A1L390 1219 aa11.28□□□□□ -0.6
PTCSC3-201ENST00000556013 FAM83GA6ND36 823 aa11.28□□□□□ -0.6
PTCSC3-201ENST00000556013 CABLES1Q8TDN4 633 aa11.28□□□□□ -0.6
PTCSC3-201ENST00000556013 MARF1Q9Y4F3 1742 aaKnown RBP11.27□□□□□ -0.61
PTCSC3-201ENST00000556013 TULP4Q9NRJ4 1543 aa11.27□□□□□ -0.61
PTCSC3-201ENST00000556013 CDK19Q9BWU1 502 aa11.27□□□□□ -0.61
PTCSC3-201ENST00000556013 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.26□□□□□ -0.61
PTCSC3-201ENST00000556013 RGPD8O14715 1765 aaPredicted RBP11.26□□□□□ -0.61
PTCSC3-201ENST00000556013 RALGAPBQ86X10 1494 aa11.25□□□□□ -0.61
PTCSC3-201ENST00000556013 USP32Q8NFA0 1604 aa11.25□□□□□ -0.61
PTCSC3-201ENST00000556013 NBPF8Q3BBV2 869 aa11.25□□□□□ -0.61
PTCSC3-201ENST00000556013 SEPT12Q8IYM1 358 aa11.25□□□□□ -0.61
PTCSC3-201ENST00000556013 ZRANB1Q9UGI0 708 aa11.24□□□□□ -0.61
PTCSC3-201ENST00000556013 BRD4O60885 1362 aaPredicted RBP11.24□□□□□ -0.61
PTCSC3-201ENST00000556013 PAK3O75914 559 aaPredicted RBP11.23□□□□□ -0.61
PTCSC3-201ENST00000556013 NBPF1Q3BBV0 1214 aa11.23□□□□□ -0.61
PTCSC3-201ENST00000556013 KRT27Q7Z3Y8 459 aa11.23□□□□□ -0.61
PTCSC3-201ENST00000556013 BTG4Q9NY30 223 aa11.23□□□□□ -0.61
PTCSC3-201ENST00000556013 POLR3AO14802 1390 aaPredicted RBP11.23□□□□□ -0.61
PTCSC3-201ENST00000556013 KIAA1210Q9ULL0 1709 aa11.23□□□□□ -0.61
PTCSC3-201ENST00000556013 ACEP12821 1306 aa11.22□□□□□ -0.61
PTCSC3-201ENST00000556013 BLMP54132 1417 aaPredicted RBP11.22□□□□□ -0.61
PTCSC3-201ENST00000556013 NWD2Q9ULI1 1742 aa11.22□□□□□ -0.61
PTCSC3-201ENST00000556013 CCDC9Q9Y3X0 531 aaKnown RBP11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms