RNA–Protein interactions for RNA: ENST00000555905.5

TMEM260-208, Transcript of transmembrane protein 260, humanhuman

TSL 5

Gene TMEM260, Length 766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-208ENST00000555905 PTPRUQ92729 1446 aa15.41■□□□□ 0.06
TMEM260-208ENST00000555905 XRN1Q8IZH2 1706 aaKnown RBP15.4■□□□□ 0.06
TMEM260-208ENST00000555905 SLC4A2P04920 1241 aa15.4■□□□□ 0.06
TMEM260-208ENST00000555905 FAM135BQ49AJ0 1406 aa15.4■□□□□ 0.06
TMEM260-208ENST00000555905 TMF1P82094 1093 aa15.39■□□□□ 0.05
TMEM260-208ENST00000555905 TESK2Q96S53 571 aa15.39■□□□□ 0.05
TMEM260-208ENST00000555905 SBNO2Q9Y2G9 1366 aa15.38■□□□□ 0.05
TMEM260-208ENST00000555905 PTCH1Q13635 1447 aa15.38■□□□□ 0.05
TMEM260-208ENST00000555905 ROBO2Q9HCK4 1378 aa15.37■□□□□ 0.05
TMEM260-208ENST00000555905 KCNA6P17658 529 aa15.37■□□□□ 0.05
TMEM260-208ENST00000555905 SAFB2Q14151 953 aaKnown RBP eCLIP15.37■□□□□ 0.05
TMEM260-208ENST00000555905 NWD1Q149M9 1564 aa15.36■□□□□ 0.05
TMEM260-208ENST00000555905 CDCA8Q53HL2 280 aa15.36■□□□□ 0.05
TMEM260-208ENST00000555905 WAPLQ7Z5K2 1190 aa15.36■□□□□ 0.05
TMEM260-208ENST00000555905 CCDC7Q96M83 1385 aa15.35■□□□□ 0.05
TMEM260-208ENST00000555905 PLEKHH1Q9ULM0 1364 aa15.35■□□□□ 0.05
TMEM260-208ENST00000555905 C11orf95C9JLR9 678 aaPredicted RBP15.34■□□□□ 0.05
TMEM260-208ENST00000555905 KIF7Q2M1P5 1343 aa15.34■□□□□ 0.05
TMEM260-208ENST00000555905 WASHC2AQ641Q2 1341 aa15.34■□□□□ 0.05
TMEM260-208ENST00000555905 EVC2Q86UK5 1308 aa15.34■□□□□ 0.05
TMEM260-208ENST00000555905 MINK1Q8N4C8 1332 aaPredicted RBP15.34■□□□□ 0.05
TMEM260-208ENST00000555905 DISP3Q9P2K9 1392 aa15.34■□□□□ 0.05
TMEM260-208ENST00000555905 POLR3GLQ9BT43 218 aa15.33■□□□□ 0.04
TMEM260-208ENST00000555905 NKTRP30414 1462 aaKnown RBP15.33■□□□□ 0.04
TMEM260-208ENST00000555905 STRCP1A6NGW2 1772 aa15.3■□□□□ 0.04
TMEM260-208ENST00000555905 TULP4Q9NRJ4 1543 aa15.3■□□□□ 0.04
TMEM260-208ENST00000555905 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.3■□□□□ 0.04
TMEM260-208ENST00000555905 ADGRB2O60241 1585 aa15.29■□□□□ 0.04
TMEM260-208ENST00000555905 PROSER2Q86WR7 435 aaPredicted RBP15.29■□□□□ 0.04
TMEM260-208ENST00000555905 SRPK2P78362 688 aaKnown RBP15.28■□□□□ 0.04
TMEM260-208ENST00000555905 PUS7Q96PZ0 661 aaKnown RBP15.28■□□□□ 0.04
TMEM260-208ENST00000555905 DDX10Q13206 875 aaKnown RBP15.27■□□□□ 0.04
TMEM260-208ENST00000555905 C14orf37Q86TY3 774 aa15.27■□□□□ 0.04
TMEM260-208ENST00000555905 CDK19Q9BWU1 502 aa15.27■□□□□ 0.04
TMEM260-208ENST00000555905 ZNF335Q9H4Z2 1342 aaPredicted RBP15.26■□□□□ 0.03
TMEM260-208ENST00000555905 WASLO00401 505 aaPredicted RBP15.26■□□□□ 0.03
TMEM260-208ENST00000555905 U3KPZ7 1027 aaPredicted RBP15.26■□□□□ 0.03
TMEM260-208ENST00000555905 NALCNQ8IZF0 1738 aa15.26■□□□□ 0.03
TMEM260-208ENST00000555905 C1QBPQ07021 282 aaKnown RBP15.25■□□□□ 0.03
TMEM260-208ENST00000555905 CABP2Q9NPB3 220 aa15.25■□□□□ 0.03
TMEM260-208ENST00000555905 ADGRL3Q9HAR2 1447 aa15.25■□□□□ 0.03
TMEM260-208ENST00000555905 NCOA3Q9Y6Q9 1424 aa15.25■□□□□ 0.03
TMEM260-208ENST00000555905 ATAD2Q6PL18 1390 aa15.24■□□□□ 0.03
TMEM260-208ENST00000555905 RBM33Q96EV2 1170 aaKnown RBP15.24■□□□□ 0.03
TMEM260-208ENST00000555905 CDC42BPGQ6DT37 1551 aa15.23■□□□□ 0.03
TMEM260-208ENST00000555905 TMEM94Q12767 1356 aa15.23■□□□□ 0.03
TMEM260-208ENST00000555905 MYOM1P52179 1685 aa15.22■□□□□ 0.03
TMEM260-208ENST00000555905 DIEXFQ68CQ4 756 aaKnown RBP15.22■□□□□ 0.03
TMEM260-208ENST00000555905 NINLQ9Y2I6 1382 aa15.22■□□□□ 0.03
TMEM260-208ENST00000555905 CACNB1Q02641 598 aaPredicted RBP15.21■□□□□ 0.03
TMEM260-208ENST00000555905 TMC1Q8TDI8 760 aa15.21■□□□□ 0.03
TMEM260-208ENST00000555905 LRRC7Q96NW7 1537 aa15.21■□□□□ 0.03
TMEM260-208ENST00000555905 FMN2Q9NZ56 1722 aa15.2■□□□□ 0.02
TMEM260-208ENST00000555905 NUDT16Q96DE0 195 aaKnown RBP15.2■□□□□ 0.02
TMEM260-208ENST00000555905 C19orf44Q9H6X5 657 aa15.2■□□□□ 0.02
TMEM260-208ENST00000555905 ITSN1Q15811 1721 aa15.19■□□□□ 0.02
TMEM260-208ENST00000555905 XIRP1Q702N8 1843 aaKnown RBP15.19■□□□□ 0.02
TMEM260-208ENST00000555905 ANKARQ7Z5J8 1434 aa15.18■□□□□ 0.02
TMEM260-208ENST00000555905 ATF3P18847 181 aa15.18■□□□□ 0.02
TMEM260-208ENST00000555905 MSH6P52701 1360 aa15.18■□□□□ 0.02
TMEM260-208ENST00000555905 DCCP43146 1447 aa15.17■□□□□ 0.02
TMEM260-208ENST00000555905 ATP7BP35670 1465 aa15.17■□□□□ 0.02
TMEM260-208ENST00000555905 SLC12A5Q9H2X9 1139 aa15.17■□□□□ 0.02
TMEM260-208ENST00000555905 PANK3Q9H999 370 aa15.17■□□□□ 0.02
TMEM260-208ENST00000555905 CCDC61Q9Y6R9 512 aa15.17■□□□□ 0.02
TMEM260-208ENST00000555905 PPIP5K1Q6PFW1 1433 aa15.17■□□□□ 0.02
TMEM260-208ENST00000555905 TOPAZ1Q8N9V7 1692 aa15.16■□□□□ 0.02
TMEM260-208ENST00000555905 NUTM2FA1L443 756 aa15.16■□□□□ 0.02
TMEM260-208ENST00000555905 TERF2IPQ9NYB0 399 aa15.16■□□□□ 0.02
TMEM260-208ENST00000555905 USP32Q8NFA0 1604 aa15.16■□□□□ 0.02
TMEM260-208ENST00000555905 RGPD8O14715 1765 aaPredicted RBP15.16■□□□□ 0.02
TMEM260-208ENST00000555905 PRR36Q9H6K5 1346 aa15.16■□□□□ 0.02
TMEM260-208ENST00000555905 LTBP4Q8N2S1 1624 aa15.15■□□□□ 0.02
TMEM260-208ENST00000555905 CADPS2Q86UW7 1296 aa15.15■□□□□ 0.02
TMEM260-208ENST00000555905 CABP1Q9NZU7 370 aa15.15■□□□□ 0.02
TMEM260-208ENST00000555905 ANKRD36BQ8N2N9 1353 aa15.14■□□□□ 0.01
TMEM260-208ENST00000555905 HDGFL2Q7Z4V5 671 aaPredicted RBP15.14■□□□□ 0.01
TMEM260-208ENST00000555905 KNSTRNQ9Y448 316 aa15.12■□□□□ 0.01
TMEM260-208ENST00000555905 PLEKHG3A1L390 1219 aa15.11■□□□□ 0.01
TMEM260-208ENST00000555905 FOXD4L1Q9NU39 408 aa15.11■□□□□ 0.01
TMEM260-208ENST00000555905 AKAP12Q02952 1782 aa15.11■□□□□ 0.01
TMEM260-208ENST00000555905 A0A1W2PP64 1363 aa15.11■□□□□ 0.01
TMEM260-208ENST00000555905 ESCO1Q5FWF5 840 aa15.1■□□□□ 0.01
TMEM260-208ENST00000555905 MST1RQ04912 1400 aa15.09■□□□□ 0.01
TMEM260-208ENST00000555905 C1orf167Q5SNV9 1468 aa15.09■□□□□ 0.01
TMEM260-208ENST00000555905 CD163L1Q9NR16 1453 aa15.09■□□□□ 0.01
TMEM260-208ENST00000555905 PER1O15534 1290 aaPredicted RBP15.09■□□□□ 0.01
TMEM260-208ENST00000555905 NGDNQ8NEJ9 315 aaKnown RBP15.09■□□□□ 0.01
TMEM260-208ENST00000555905 ZNF692Q9BU19 519 aaPredicted RBP15.09■□□□□ 0.01
TMEM260-208ENST00000555905 ACEP12821 1306 aa15.09■□□□□ 0.01
TMEM260-208ENST00000555905 KTN1Q86UP2 1357 aaKnown RBP15.09■□□□□ 0.01
TMEM260-208ENST00000555905 CPSF1Q10570 1443 aaKnown RBP15.09■□□□□ 0.01
TMEM260-208ENST00000555905 NSD3Q9BZ95 1437 aa15.09■□□□□ 0.01
TMEM260-208ENST00000555905 ANP32CO43423 234 aa15.08■□□□□ 0
TMEM260-208ENST00000555905 PMFBP1Q8TBY8 1022 aa15.08■□□□□ 0
TMEM260-208ENST00000555905 CARD14Q9BXL6 1004 aa15.08■□□□□ 0
TMEM260-208ENST00000555905 PHF8Q9UPP1 1060 aa15.08■□□□□ 0
TMEM260-208ENST00000555905 KIF1AQ12756 1690 aa15.08■□□□□ 0
TMEM260-208ENST00000555905 MON2Q7Z3U7 1717 aa15.07■□□□□ 0
TMEM260-208ENST00000555905 ZBTB22O15209 634 aa15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms