RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 HAP1P54257 671 aaPredicted RBP10.65□□□□□ -0.7
SCFD1-216ENST00000555550 CD46P15529 392 aa10.64□□□□□ -0.71
SCFD1-216ENST00000555550 HLA-CQ95604 372 aa10.64□□□□□ -0.71
SCFD1-216ENST00000555550 KDM2AQ9Y2K7 1162 aa10.64□□□□□ -0.71
SCFD1-216ENST00000555550 C11orf95C9JLR9 678 aaPredicted RBP10.63□□□□□ -0.71
SCFD1-216ENST00000555550 LCE2AQ5TA79 106 aaPredicted RBP10.63□□□□□ -0.71
SCFD1-216ENST00000555550 KDM4AO75164 1064 aa10.62□□□□□ -0.71
SCFD1-216ENST00000555550 TRIM32Q13049 653 aa10.62□□□□□ -0.71
SCFD1-216ENST00000555550 Q3C1V9 767 aa10.62□□□□□ -0.71
SCFD1-216ENST00000555550 MMP16P51512 607 aa10.61□□□□□ -0.71
SCFD1-216ENST00000555550 USB1Q9BQ65 265 aaKnown RBP10.61□□□□□ -0.71
SCFD1-216ENST00000555550 J3QL48 77 aa10.6□□□□□ -0.71
SCFD1-216ENST00000555550 WNT7AO00755 349 aa10.6□□□□□ -0.71
SCFD1-216ENST00000555550 IRF6O14896 467 aa10.6□□□□□ -0.71
SCFD1-216ENST00000555550 SMPD1P17405 629 aa10.6□□□□□ -0.71
SCFD1-216ENST00000555550 MDM2Q00987 491 aaPredicted RBP10.6□□□□□ -0.71
SCFD1-216ENST00000555550 CTC1Q2NKJ3 1217 aa10.6□□□□□ -0.71
SCFD1-216ENST00000555550 CCDC24Q8N4L8 307 aa10.6□□□□□ -0.71
SCFD1-216ENST00000555550 SNIP1Q8TAD8 396 aaKnown RBP10.6□□□□□ -0.71
SCFD1-216ENST00000555550 MRGPRX2Q96LB1 330 aa10.6□□□□□ -0.71
SCFD1-216ENST00000555550 SMCPP49901 116 aaPredicted RBP10.59□□□□□ -0.71
SCFD1-216ENST00000555550 MAP2K5Q13163 448 aa10.59□□□□□ -0.71
SCFD1-216ENST00000555550 DXOO77932 396 aaKnown RBP10.57□□□□□ -0.72
SCFD1-216ENST00000555550 GUCA2AQ02747 115 aa10.57□□□□□ -0.72
SCFD1-216ENST00000555550 SYMPKQ92797 1274 aaKnown RBP10.56□□□□□ -0.72
SCFD1-216ENST00000555550 WFS1O76024 890 aa10.55□□□□□ -0.72
SCFD1-216ENST00000555550 HPS1Q92902 700 aa10.54□□□□□ -0.72
SCFD1-216ENST00000555550 SNRPBP14678 240 aaKnown RBP10.53□□□□□ -0.72
SCFD1-216ENST00000555550 ATP13A2Q9NQ11 1180 aa10.53□□□□□ -0.72
SCFD1-216ENST00000555550 MINK1Q8N4C8 1332 aaPredicted RBP10.53□□□□□ -0.72
SCFD1-216ENST00000555550 HOXA2O43364 376 aa10.52□□□□□ -0.73
SCFD1-216ENST00000555550 SKOR1P84550 965 aa10.52□□□□□ -0.73
SCFD1-216ENST00000555550 RC3H1Q5TC82 1133 aaKnown RBP10.52□□□□□ -0.73
SCFD1-216ENST00000555550 USP46P62068 366 aa10.51□□□□□ -0.73
SCFD1-216ENST00000555550 NFX1Q12986 1120 aaKnown RBP10.5□□□□□ -0.73
SCFD1-216ENST00000555550 CCDC102AQ96A19 550 aa10.5□□□□□ -0.73
SCFD1-216ENST00000555550 REPIN1Q9BWE0 567 aaKnown RBP10.48□□□□□ -0.73
SCFD1-216ENST00000555550 FAM217BQ9NTX9 383 aaPredicted RBP10.48□□□□□ -0.73
SCFD1-216ENST00000555550 TULP1O00294 542 aaPredicted RBP10.47□□□□□ -0.73
SCFD1-216ENST00000555550 PTCRAQ6ISU1 281 aaPredicted RBP10.47□□□□□ -0.73
SCFD1-216ENST00000555550 ALDH1A1P00352 501 aa10.46□□□□□ -0.73
SCFD1-216ENST00000555550 JUNDP17535 347 aa10.46□□□□□ -0.73
SCFD1-216ENST00000555550 WNT7BP56706 349 aa10.46□□□□□ -0.73
SCFD1-216ENST00000555550 GPCPD1Q9NPB8 672 aa10.46□□□□□ -0.73
SCFD1-216ENST00000555550 NUTM1Q86Y26 1132 aa10.45□□□□□ -0.74
SCFD1-216ENST00000555550 KRI1Q8N9T8 703 aaKnown RBP10.45□□□□□ -0.74
SCFD1-216ENST00000555550 TRIM47Q96LD4 638 aa10.45□□□□□ -0.74
SCFD1-216ENST00000555550 CLCN1P35523 988 aa10.44□□□□□ -0.74
SCFD1-216ENST00000555550 LCE2CQ5TA81 110 aa10.43□□□□□ -0.74
SCFD1-216ENST00000555550 NUDT12Q9BQG2 462 aa10.43□□□□□ -0.74
SCFD1-216ENST00000555550 SENP2Q9HC62 589 aa10.43□□□□□ -0.74
SCFD1-216ENST00000555550 PCDHGC3Q9UN70 934 aa10.43□□□□□ -0.74
SCFD1-216ENST00000555550 TERTO14746 1132 aaKnown RBP10.42□□□□□ -0.74
SCFD1-216ENST00000555550 FDX1P10109 184 aa10.41□□□□□ -0.74
SCFD1-216ENST00000555550 RETREG3Q86VR2 466 aa10.41□□□□□ -0.74
SCFD1-216ENST00000555550 C6orf229H3BNL8 230 aa10.4□□□□□ -0.74
SCFD1-216ENST00000555550 SIAH2O43255 324 aa10.4□□□□□ -0.74
SCFD1-216ENST00000555550 EHBP1Q8NDI1 1231 aa10.4□□□□□ -0.74
SCFD1-216ENST00000555550 WIPF1O43516 503 aa10.38□□□□□ -0.75
SCFD1-216ENST00000555550 SSTR3P32745 418 aaPredicted RBP10.38□□□□□ -0.75
SCFD1-216ENST00000555550 NDUFV2P19404 249 aa10.37□□□□□ -0.75
SCFD1-216ENST00000555550 SH3BP2P78314 561 aa10.37□□□□□ -0.75
SCFD1-216ENST00000555550 VSIG10Q8N0Z9 540 aa10.37□□□□□ -0.75
SCFD1-216ENST00000555550 KIFC2Q96AC6 838 aa10.37□□□□□ -0.75
SCFD1-216ENST00000555550 MS4A1P11836 297 aa10.36□□□□□ -0.75
SCFD1-216ENST00000555550 BMP1P13497 986 aa10.36□□□□□ -0.75
SCFD1-216ENST00000555550 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.36□□□□□ -0.75
SCFD1-216ENST00000555550 SPIRE2Q8WWL2 714 aa10.36□□□□□ -0.75
SCFD1-216ENST00000555550 INSM1Q01101 510 aaPredicted RBP10.35□□□□□ -0.75
SCFD1-216ENST00000555550 WASF2Q9Y6W5 498 aa10.35□□□□□ -0.75
SCFD1-216ENST00000555550 MOXD2PA6NHM9 499 aa10.34□□□□□ -0.75
SCFD1-216ENST00000555550 CAPN5O15484 640 aaPredicted RBP10.34□□□□□ -0.75
SCFD1-216ENST00000555550 CCNYL3P0C7X3 344 aa10.34□□□□□ -0.75
SCFD1-216ENST00000555550 LINC01559Q495D7 138 aa10.34□□□□□ -0.75
SCFD1-216ENST00000555550 TRIM46Q7Z4K8 759 aa10.34□□□□□ -0.75
SCFD1-216ENST00000555550 STK17AQ9UEE5 414 aa10.34□□□□□ -0.75
SCFD1-216ENST00000555550 BAP1Q92560 729 aa10.33□□□□□ -0.76
SCFD1-216ENST00000555550 EVA1BQ9NVM1 165 aa10.32□□□□□ -0.76
SCFD1-216ENST00000555550 UNC93B1Q9H1C4 597 aa10.31□□□□□ -0.76
SCFD1-216ENST00000555550 PRR7Q8TB68 274 aa10.3□□□□□ -0.76
SCFD1-216ENST00000555550 VEGFBP49765 207 aa10.29□□□□□ -0.76
SCFD1-216ENST00000555550 TTLL12Q14166 644 aaPredicted RBP10.29□□□□□ -0.76
SCFD1-216ENST00000555550 PTPRNQ16849 979 aa10.29□□□□□ -0.76
SCFD1-216ENST00000555550 NXF1Q9UBU9 619 aaKnown RBP10.29□□□□□ -0.76
SCFD1-216ENST00000555550 KCNH2Q12809 1159 aa10.28□□□□□ -0.76
SCFD1-216ENST00000555550 SLC16A10Q8TF71 515 aa10.28□□□□□ -0.76
SCFD1-216ENST00000555550 TLL2Q9Y6L7 1015 aa10.28□□□□□ -0.76
SCFD1-216ENST00000555550 MTMR2Q13614 643 aa10.26□□□□□ -0.77
SCFD1-216ENST00000555550 ZFP42Q96MM3 310 aa10.26□□□□□ -0.77
SCFD1-216ENST00000555550 GIGYF2Q6Y7W6 1299 aaKnown RBP10.25□□□□□ -0.77
SCFD1-216ENST00000555550 BARGINQ6ZT62 677 aa10.25□□□□□ -0.77
SCFD1-216ENST00000555550 ZNF511Q8NB15 262 aa10.25□□□□□ -0.77
SCFD1-216ENST00000555550 BEGAINQ9BUH8 593 aa10.25□□□□□ -0.77
SCFD1-216ENST00000555550 GMPRP36959 345 aa10.24□□□□□ -0.77
SCFD1-216ENST00000555550 ZMYND10O75800 440 aa10.23□□□□□ -0.77
SCFD1-216ENST00000555550 CTHP32929 405 aa10.23□□□□□ -0.77
SCFD1-216ENST00000555550 PCDHB15Q9Y5E8 787 aa10.23□□□□□ -0.77
SCFD1-216ENST00000555550 VARSP26640 1264 aaKnown RBP10.22□□□□□ -0.77
SCFD1-216ENST00000555550 NNTQ13423 1086 aa10.22□□□□□ -0.77
SCFD1-216ENST00000555550 PLEKHG3A1L390 1219 aa10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms