RNA–Protein interactions for RNA: ENST00000555405.5

NEK9-205, Transcript of NIMA related kinase 9, humanhuman

TSL 1 (best)

Gene NEK9, Length 3,357 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK9-205ENST00000555405 IFT172Q9UG01 1749 aa13.89□□□□□ -0.19
NEK9-205ENST00000555405 PTPRUQ92729 1446 aa13.89□□□□□ -0.19
NEK9-205ENST00000555405 NEURL4Q96JN8 1562 aa13.88□□□□□ -0.19
NEK9-205ENST00000555405 LMOD2Q6P5Q4 547 aa13.88□□□□□ -0.19
NEK9-205ENST00000555405 MRS2Q9HD23 443 aa13.88□□□□□ -0.19
NEK9-205ENST00000555405 ASXL1Q8IXJ9 1541 aa13.88□□□□□ -0.19
NEK9-205ENST00000555405 NGDNQ8NEJ9 315 aaKnown RBP13.88□□□□□ -0.19
NEK9-205ENST00000555405 PRKRIP1Q9H875 184 aaPredicted RBP13.87□□□□□ -0.19
NEK9-205ENST00000555405 CCDC184Q52MB2 194 aa13.87□□□□□ -0.19
NEK9-205ENST00000555405 ARHGAP23Q9P227 1491 aa13.87□□□□□ -0.19
NEK9-205ENST00000555405 ZNF335Q9H4Z2 1342 aaPredicted RBP13.86□□□□□ -0.19
NEK9-205ENST00000555405 PAK3O75914 559 aaPredicted RBP13.86□□□□□ -0.19
NEK9-205ENST00000555405 XPCQ01831 940 aaPredicted RBP13.86□□□□□ -0.19
NEK9-205ENST00000555405 HDGFL2Q7Z4V5 671 aaPredicted RBP13.86□□□□□ -0.19
NEK9-205ENST00000555405 GGNBP2Q9H3C7 697 aa13.86□□□□□ -0.19
NEK9-205ENST00000555405 ESCO1Q5FWF5 840 aa13.85□□□□□ -0.19
NEK9-205ENST00000555405 CARD14Q9BXL6 1004 aa13.85□□□□□ -0.19
NEK9-205ENST00000555405 SLIT1O75093 1534 aa13.85□□□□□ -0.19
NEK9-205ENST00000555405 PPM1GO15355 546 aaPredicted RBP13.85□□□□□ -0.19
NEK9-205ENST00000555405 IQGAP1P46940 1657 aa13.85□□□□□ -0.19
NEK9-205ENST00000555405 NUTM2GQ5VZR2 741 aa13.85□□□□□ -0.19
NEK9-205ENST00000555405 TERF2IPQ9NYB0 399 aa13.84□□□□□ -0.19
NEK9-205ENST00000555405 CCDC61Q9Y6R9 512 aa13.84□□□□□ -0.19
NEK9-205ENST00000555405 MORC1Q86VD1 984 aa13.83□□□□□ -0.2
NEK9-205ENST00000555405 SCAF1Q9H7N4 1312 aaKnown RBP13.82□□□□□ -0.2
NEK9-205ENST00000555405 FBLN1P23142 703 aa13.82□□□□□ -0.2
NEK9-205ENST00000555405 ZBTB7CA1YPR0 619 aa13.82□□□□□ -0.2
NEK9-205ENST00000555405 ATF3P18847 181 aa13.82□□□□□ -0.2
NEK9-205ENST00000555405 SETBP1Q9Y6X0 1596 aa13.82□□□□□ -0.2
NEK9-205ENST00000555405 SALL2Q9Y467 1007 aaPredicted RBP13.82□□□□□ -0.2
NEK9-205ENST00000555405 PER1O15534 1290 aaPredicted RBP13.81□□□□□ -0.2
NEK9-205ENST00000555405 KTN1Q86UP2 1357 aaKnown RBP13.81□□□□□ -0.2
NEK9-205ENST00000555405 PRR36Q9H6K5 1346 aa13.81□□□□□ -0.2
NEK9-205ENST00000555405 KIAA1210Q9ULL0 1709 aa13.8□□□□□ -0.2
NEK9-205ENST00000555405 FOXO3O43524 673 aa13.8□□□□□ -0.2
NEK9-205ENST00000555405 ZRANB1Q9UGI0 708 aa13.8□□□□□ -0.2
NEK9-205ENST00000555405 NRXN3Q9Y4C0 1643 aa13.8□□□□□ -0.2
NEK9-205ENST00000555405 ORAI2Q96SN7 254 aa13.8□□□□□ -0.2
NEK9-205ENST00000555405 NSD3Q9BZ95 1437 aa13.79□□□□□ -0.2
NEK9-205ENST00000555405 LMTK3Q96Q04 1460 aa13.79□□□□□ -0.2
NEK9-205ENST00000555405 DDX17Q92841 729 aaKnown RBP13.79□□□□□ -0.2
NEK9-205ENST00000555405 ATAD2Q6PL18 1390 aa13.78□□□□□ -0.2
NEK9-205ENST00000555405 ACEP12821 1306 aa13.78□□□□□ -0.2
NEK9-205ENST00000555405 TMEM94Q12767 1356 aa13.78□□□□□ -0.2
NEK9-205ENST00000555405 QRICH2Q9H0J4 1663 aa13.77□□□□□ -0.2
NEK9-205ENST00000555405 PSME1Q06323 249 aa13.77□□□□□ -0.2
NEK9-205ENST00000555405 SIRT1Q96EB6 747 aa13.77□□□□□ -0.2
NEK9-205ENST00000555405 SBNO2Q9Y2G9 1366 aa13.77□□□□□ -0.21
NEK9-205ENST00000555405 NME9Q86XW9 330 aa13.77□□□□□ -0.21
NEK9-205ENST00000555405 LAMC1P11047 1609 aa13.77□□□□□ -0.21
NEK9-205ENST00000555405 PPIP5K1Q6PFW1 1433 aa13.77□□□□□ -0.21
NEK9-205ENST00000555405 CGNL1Q0VF96 1302 aa13.77□□□□□ -0.21
NEK9-205ENST00000555405 DMRT2Q9Y5R5 561 aa13.77□□□□□ -0.21
NEK9-205ENST00000555405 AMER1Q5JTC6 1135 aaPredicted RBP13.76□□□□□ -0.21
NEK9-205ENST00000555405 MED14O60244 1454 aa13.76□□□□□ -0.21
NEK9-205ENST00000555405 TULP4Q9NRJ4 1543 aa13.76□□□□□ -0.21
NEK9-205ENST00000555405 A0A1W2PP64 1363 aa13.76□□□□□ -0.21
NEK9-205ENST00000555405 C19orf44Q9H6X5 657 aa13.75□□□□□ -0.21
NEK9-205ENST00000555405 PHF8Q9UPP1 1060 aa13.75□□□□□ -0.21
NEK9-205ENST00000555405 FAM135BQ49AJ0 1406 aa13.75□□□□□ -0.21
NEK9-205ENST00000555405 ARHGEF28Q8N1W1 1705 aaKnown RBP13.75□□□□□ -0.21
NEK9-205ENST00000555405 RALBP1Q15311 655 aa13.74□□□□□ -0.21
NEK9-205ENST00000555405 HNRNPUQ00839 825 aaKnown RBP eCLIP13.74□□□□□ -0.21
NEK9-205ENST00000555405 PIK3R4Q99570 1358 aa13.74□□□□□ -0.21
NEK9-205ENST00000555405 FYB1O15117 783 aa13.73□□□□□ -0.21
NEK9-205ENST00000555405 KDM5AP29375 1690 aaKnown RBP13.73□□□□□ -0.21
NEK9-205ENST00000555405 NLRP6P59044 892 aa13.72□□□□□ -0.21
NEK9-205ENST00000555405 ABTB2Q8N961 1025 aa13.72□□□□□ -0.21
NEK9-205ENST00000555405 MYBBP1AQ9BQG0 1328 aaKnown RBP13.72□□□□□ -0.21
NEK9-205ENST00000555405 CCER2I3L3R5 266 aa13.71□□□□□ -0.21
NEK9-205ENST00000555405 PPP2R1AP30153 589 aa13.71□□□□□ -0.21
NEK9-205ENST00000555405 PIP4K2BP78356 416 aa13.71□□□□□ -0.21
NEK9-205ENST00000555405 ANKRD36BQ8N2N9 1353 aa13.71□□□□□ -0.21
NEK9-205ENST00000555405 ZNF142P52746 1687 aaPredicted RBP13.71□□□□□ -0.22
NEK9-205ENST00000555405 TECPR2O15040 1411 aa13.71□□□□□ -0.22
NEK9-205ENST00000555405 COG3Q96JB2 828 aa13.71□□□□□ -0.22
NEK9-205ENST00000555405 MTHFSP49914 203 aa13.7□□□□□ -0.22
NEK9-205ENST00000555405 NLRP13Q86W25 1043 aa13.7□□□□□ -0.22
NEK9-205ENST00000555405 RRS1Q15050 365 aaKnown RBP13.7□□□□□ -0.22
NEK9-205ENST00000555405 ZNF692Q9BU19 519 aaPredicted RBP13.7□□□□□ -0.22
NEK9-205ENST00000555405 MSH6P52701 1360 aa13.69□□□□□ -0.22
NEK9-205ENST00000555405 U2SURPO15042 1029 aaKnown RBP13.69□□□□□ -0.22
NEK9-205ENST00000555405 CADPS2Q86UW7 1296 aa13.69□□□□□ -0.22
NEK9-205ENST00000555405 PUS7Q96PZ0 661 aaKnown RBP13.69□□□□□ -0.22
NEK9-205ENST00000555405 DLC1Q96QB1 1528 aa13.69□□□□□ -0.22
NEK9-205ENST00000555405 WDR43Q15061 677 aaKnown RBP eCLIP13.69□□□□□ -0.22
NEK9-205ENST00000555405 SETD1AO15047 1707 aaKnown RBP13.68□□□□□ -0.22
NEK9-205ENST00000555405 PTCH1Q13635 1447 aa13.68□□□□□ -0.22
NEK9-205ENST00000555405 TTC21BQ7Z4L5 1316 aa13.67□□□□□ -0.22
NEK9-205ENST00000555405 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.67□□□□□ -0.22
NEK9-205ENST00000555405 PLEKHG3A1L390 1219 aa13.66□□□□□ -0.22
NEK9-205ENST00000555405 KRT28Q7Z3Y7 464 aa13.66□□□□□ -0.22
NEK9-205ENST00000555405 LTV1Q96GA3 475 aaPredicted RBP13.66□□□□□ -0.22
NEK9-205ENST00000555405 CCDC146Q8IYE0 955 aa13.66□□□□□ -0.22
NEK9-205ENST00000555405 HAP1P54257 671 aaPredicted RBP13.66□□□□□ -0.22
NEK9-205ENST00000555405 SLAIN2Q9P270 581 aa13.66□□□□□ -0.22
NEK9-205ENST00000555405 NEUROD2Q15784 382 aa13.65□□□□□ -0.22
NEK9-205ENST00000555405 EMILIN1Q9Y6C2 1016 aa13.65□□□□□ -0.22
NEK9-205ENST00000555405 CPS1P31327 1500 aa13.65□□□□□ -0.22
NEK9-205ENST00000555405 DIP2AQ14689 1571 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms